Experiment set31S528 for Burkholderia phytofirmans PsJN

Compare to:

Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS22755 +7.0 32.6 LacI family transcription regulator compare
BPHYT_RS17240 +5.8 5.7 cell division protein FtsW compare
BPHYT_RS12475 +4.4 8.5 DNA mismatch repair protein MutS compare
BPHYT_RS27715 +4.0 10.3 UspA domain-containing protein compare
BPHYT_RS30865 +3.6 4.3 sugar ABC transporter ATP-binding protein compare
BPHYT_RS04005 +3.5 5.9 GDP-L-fucose synthase compare
BPHYT_RS25450 +3.5 6.3 membrane protein compare
BPHYT_RS18850 +3.3 5.7 Flagellar brake protein YcgR 1 compare
BPHYT_RS26695 +3.1 1.5 cobalamin biosynthesis protein CbiG compare
BPHYT_RS03650 +3.1 4.4 DNA mismatch repair protein compare
BPHYT_RS02880 +3.0 1.9 ATP-dependent protease compare
BPHYT_RS33745 +3.0 1.3 metallophosphoesterase compare
BPHYT_RS23570 +3.0 2.8 chemotaxis protein CheY compare
BPHYT_RS08600 +3.0 5.8 hypothetical protein compare
BPHYT_RS21975 +2.9 2.2 2-dehydropantoate 2-reductase compare
BPHYT_RS33185 +2.9 2.3 methyltransferase type 11 compare
BPHYT_RS04285 +2.8 2.3 rhamnosyltransferase compare
BPHYT_RS19735 +2.7 2.0 hypothetical protein compare
BPHYT_RS22200 +2.7 1.7 cardiolipin synthetase compare
BPHYT_RS30645 +2.7 1.4 hypothetical protein compare
BPHYT_RS32280 +2.5 1.5 membrane protein compare
BPHYT_RS00770 +2.4 3.1 conjugal transfer protein TraC compare
BPHYT_RS29485 +2.4 3.6 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS16470 +2.3 8.0 DeoR faimly transcriptional regulator compare
BPHYT_RS26010 +2.3 1.5 ABC transporter substrate-binding protein compare
BPHYT_RS17165 +2.3 2.6 cell division protein ZapD compare
BPHYT_RS30395 +2.2 2.1 small mechanosensitive ion channel protein MscS compare
BPHYT_RS13610 +2.1 3.5 MerR family transcriptional regulator compare
BPHYT_RS18910 +2.1 2.3 FlgN compare
BPHYT_RS09690 +2.1 2.9 phosphate starvation-inducible protein PsiF compare
BPHYT_RS07300 +2.1 5.1 porin compare
BPHYT_RS20790 +2.1 2.7 TetR family transcriptional regulator compare
BPHYT_RS07320 +2.0 2.2 dihydrodipicolinate synthetase compare
BPHYT_RS10965 +2.0 4.8 hypothetical protein compare
BPHYT_RS08765 +2.0 1.8 ABC transporter ATP-binding protein compare
BPHYT_RS17430 +1.9 1.7 thiol:disulfide interchange protein compare
BPHYT_RS26515 +1.9 2.9 HAD family hydrolase compare
BPHYT_RS15070 +1.9 1.3 amidase compare
BPHYT_RS22780 +1.9 1.1 sugar ABC transporter permease compare
BPHYT_RS00855 +1.9 3.6 hypothetical protein compare
BPHYT_RS01795 +1.9 11.9 histidine kinase compare
BPHYT_RS04830 +1.8 2.5 hypothetical protein compare
BPHYT_RS02765 +1.8 1.2 cytochrome BD oxidase subunit I compare
BPHYT_RS02760 +1.8 1.4 cytochrome BD oxidase subunit II compare
BPHYT_RS35730 +1.8 2.1 hypothetical protein compare
BPHYT_RS13315 +1.8 2.6 dihydropyrimidine dehydrogenase subunit A compare
BPHYT_RS28055 +1.8 1.9 membrane protein compare
BPHYT_RS02755 +1.7 1.8 cyd operon protein YbgT compare
BPHYT_RS09525 +1.7 1.6 toxin HipA compare
BPHYT_RS17050 +1.7 4.2 hypothetical protein compare
BPHYT_RS32750 +1.7 2.4 lipoprotein compare
BPHYT_RS06345 +1.7 2.4 sensor histidine kinase compare
BPHYT_RS18660 +1.7 1.8 hypothetical protein compare
BPHYT_RS31680 +1.7 1.5 dehydrogenase compare
BPHYT_RS15490 +1.7 3.1 coproporphyrinogen III oxidase compare
BPHYT_RS01790 +1.7 9.8 LuxR family transcriptional regulator compare
BPHYT_RS06215 +1.6 2.1 recombinase RdgC compare
BPHYT_RS33965 +1.6 1.6 methylcitrate synthase compare
BPHYT_RS06710 +1.6 1.6 hypothetical protein compare
BPHYT_RS21215 +1.6 4.4 Crp/Fnr family transcriptional regulator compare
BPHYT_RS11205 +1.6 2.8 LacI family transcription regulator compare
BPHYT_RS16735 +1.6 2.5 phosphogluconate dehydratase compare
BPHYT_RS19710 +1.6 1.2 aldehyde dehydrogenase compare
BPHYT_RS13975 +1.6 1.9 LysR family transcriptional regulator compare
BPHYT_RS27855 +1.6 2.2 hypothetical protein compare
BPHYT_RS07400 +1.6 3.1 hypothetical protein compare
BPHYT_RS11960 +1.6 1.5 MarR family transcriptional regulator compare
BPHYT_RS11110 +1.5 2.9 chemotaxis protein CheY compare
BPHYT_RS28905 +1.5 2.0 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS34250 +1.5 6.5 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) compare
BPHYT_RS29250 +1.5 1.7 dihydrodipicolinate synthase compare
BPHYT_RS16175 +1.5 1.7 hemolysin D compare
BPHYT_RS29175 +1.5 2.9 ABC transporter ATP-binding protein compare
BPHYT_RS33850 +1.5 1.9 sporulation protein compare
BPHYT_RS34745 +1.5 1.1 hypothetical protein compare
BPHYT_RS13390 +1.5 1.0 IclR family transcriptional regulator compare
BPHYT_RS10150 +1.5 1.3 LysR family transcriptional regulator compare
BPHYT_RS30040 +1.5 1.3 hypothetical protein compare
BPHYT_RS32435 +1.5 3.0 formate dehydrogenase-N subunit beta compare
BPHYT_RS00335 +1.4 2.3 peptidase M19 compare
BPHYT_RS16020 +1.4 1.7 AsnC family transcriptional regulator compare
BPHYT_RS06190 +1.4 0.9 heptosyltransferase compare
BPHYT_RS22030 +1.4 1.6 peptide ABC transporter ATP-binding protein compare
BPHYT_RS15585 +1.4 1.2 acetyltransferase compare
BPHYT_RS14410 +1.4 1.2 hypothetical protein compare
BPHYT_RS23520 +1.4 1.8 peroxidase compare
BPHYT_RS22710 +1.4 1.6 XRE family transcriptional regulator compare
BPHYT_RS28190 +1.4 1.1 porin compare
BPHYT_RS19025 +1.4 8.8 transcriptional regulator compare
BPHYT_RS21385 +1.4 2.1 short-chain dehydrogenase compare
BPHYT_RS13380 +1.4 1.1 porin compare
BPHYT_RS24175 +1.3 2.3 C4-dicarboxylate ABC transporter compare
BPHYT_RS21870 +1.3 1.7 hypothetical protein compare
BPHYT_RS11210 +1.3 3.2 ABC transporter permease compare
BPHYT_RS32290 +1.3 1.5 hypothetical protein compare
BPHYT_RS29035 +1.3 1.4 arsenic transporter compare
BPHYT_RS33690 +1.3 1.1 molybdate ABC transporter permease compare
BPHYT_RS36545 +1.3 0.9 Resolvase helix-turn-helix domain-containing protein compare
BPHYT_RS28545 +1.3 1.4 acetamidase compare
BPHYT_RS01095 +1.3 1.3 hypothetical protein compare
BPHYT_RS23155 +1.3 1.3 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS18745 +1.3 1.5 coniferyl aldehyde dehydrogenase compare
BPHYT_RS24120 +1.3 1.4 hexuronate transporter ExuT compare
BPHYT_RS01975 +1.3 1.9 hypothetical protein compare
BPHYT_RS15145 +1.3 2.6 3-oxoacyl-ACP synthase compare
BPHYT_RS05900 +1.3 1.3 hypothetical protein compare
BPHYT_RS26700 +1.3 2.4 hypothetical protein compare
BPHYT_RS26135 +1.3 1.0 ABC transporter permease compare
BPHYT_RS33255 +1.3 1.7 ABC transporter substrate-binding protein compare
BPHYT_RS34990 +1.3 3.4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS08675 +1.3 1.0 bleomycin resistance protein compare
BPHYT_RS31685 +1.2 1.8 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS17925 +1.2 3.4 hypothetical protein compare
BPHYT_RS04290 +1.2 1.2 glycosyl transferase family 2 compare
BPHYT_RS11515 +1.2 2.8 LysR family transcriptional regulator compare
BPHYT_RS07690 +1.2 2.4 AraC family transcriptional regulator compare
BPHYT_RS23480 +1.2 0.9 hypothetical protein compare
BPHYT_RS26300 +1.2 1.6 ATP-dependent DNA ligase compare
BPHYT_RS20115 +1.2 1.9 transcriptional regulator compare
BPHYT_RS25140 +1.2 1.4 hypothetical protein compare
BPHYT_RS22295 +1.2 1.5 LysR family transcriptional regulator compare
BPHYT_RS01170 +1.2 1.4 hypothetical protein compare
BPHYT_RS22910 +1.2 0.9 hypothetical protein compare
BPHYT_RS13040 +1.2 1.2 hypothetical protein compare
BPHYT_RS31320 +1.2 1.9 hypothetical protein compare
BPHYT_RS04000 +1.2 1.1 GDP-mannose 4,6-dehydratase compare
BPHYT_RS06935 +1.2 1.2 hypothetical protein compare
BPHYT_RS06335 +1.2 1.1 CopG family transcriptional regulator compare
BPHYT_RS27030 +1.2 1.3 transcriptional regulator compare
BPHYT_RS24795 +1.2 2.3 XRE family transcriptional regulator compare
BPHYT_RS34220 +1.2 1.5 L-fucono-1,5-lactonase (from data) compare
BPHYT_RS27455 +1.2 1.0 rod shape-determining protein MreB compare
BPHYT_RS04865 +1.2 2.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BPHYT_RS20695 +1.2 1.6 ribokinase compare
BPHYT_RS29195 +1.2 1.8 beta-glucosidase compare
BPHYT_RS12825 +1.2 2.2 phasin family protein compare
BPHYT_RS09905 +1.2 1.1 hypothetical protein compare
BPHYT_RS22465 +1.1 1.7 zinc carboxypeptidase-like protein compare
BPHYT_RS20065 +1.1 2.4 hypothetical protein compare
BPHYT_RS15285 +1.1 3.0 transcription elongation factor GreB compare
BPHYT_RS10315 +1.1 1.9 MFS transporter compare
BPHYT_RS24600 +1.1 2.1 (2Fe-2S)-binding protein compare
BPHYT_RS05290 +1.1 1.0 hypothetical protein compare
BPHYT_RS06175 +1.1 2.2 LPS biosynthesis compare
BPHYT_RS36415 +1.1 1.5 hypothetical protein compare
BPHYT_RS35650 +1.1 1.2 DSBA oxidoreductase compare
BPHYT_RS23535 +1.1 1.1 ABC transporter substrate-binding protein compare
BPHYT_RS17490 +1.1 1.9 haloacid dehalogenase compare
BPHYT_RS35085 +1.1 2.6 transcriptional regulator compare
BPHYT_RS11765 +1.1 0.9 polyamine ABC transporter permease compare
BPHYT_RS33225 +1.1 2.2 NAD-dependent epimerase/dehydratase compare
BPHYT_RS10895 +1.1 1.8 transcriptional regulator compare
BPHYT_RS12640 +1.1 3.9 phosphoesterase compare
BPHYT_RS36090 +1.1 1.6 hypothetical protein compare
BPHYT_RS08410 +1.1 1.0 dehydrogenase compare
BPHYT_RS31275 +1.1 2.7 hypothetical protein compare
BPHYT_RS26080 +1.1 0.9 ABC transporter ATPase compare
BPHYT_RS11060 +1.1 1.5 4-hydroxybenzoate 3-monooxygenase compare
BPHYT_RS23170 +1.1 1.8 XRE family transcriptional regulator compare
BPHYT_RS22715 +1.1 1.1 L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data) compare
BPHYT_RS10340 +1.1 1.5 sensor protein Chase2 compare
BPHYT_RS04135 +1.1 2.0 glycosyl transferase family 1 compare
BPHYT_RS23230 +1.0 0.5 histidine kinase compare
BPHYT_RS01730 +1.0 1.9 serine/threonine protein kinase compare
BPHYT_RS16760 +1.0 0.7 hypothetical protein compare
BPHYT_RS23840 +1.0 4.0 methyltransferase compare
BPHYT_RS35655 +1.0 1.8 hypothetical protein compare
BPHYT_RS15775 +1.0 1.0 peptide ABC transporter permease compare
BPHYT_RS32225 +1.0 0.7 hypothetical protein compare
BPHYT_RS11365 +1.0 2.7 TetR family transcriptional regulator compare
BPHYT_RS10005 +1.0 1.1 hypothetical protein compare
BPHYT_RS12660 +1.0 1.6 Hsp33 chaperonin compare
BPHYT_RS08845 +1.0 1.7 RNA polymerase sigma factor compare
BPHYT_RS27490 +1.0 1.0 porin compare
BPHYT_RS04385 +1.0 0.9 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS20150 +1.0 1.8 glycosyl transferase family 1 compare
BPHYT_RS20120 +1.0 1.6 porin compare
BPHYT_RS05610 +1.0 6.4 DNA-cytosine methyltransferase compare
BPHYT_RS22215 +1.0 2.2 hypothetical protein compare
BPHYT_RS12900 +1.0 1.2 transposase compare
BPHYT_RS36025 +1.0 1.9 hypothetical protein compare
BPHYT_RS36560 +1.0 0.9 hypothetical protein compare
BPHYT_RS09755 +1.0 1.3 glycosyl transferase family 1 compare
BPHYT_RS26215 +1.0 1.5 haloacid dehalogenase compare
BPHYT_RS11945 +1.0 2.5 multidrug transporter compare
BPHYT_RS15830 +1.0 1.6 diguanylate phosphodiesterase compare
BPHYT_RS17900 +1.0 2.5 hypothetical protein compare
BPHYT_RS28630 +1.0 1.8 IclR family transcriptional regulator compare
BPHYT_RS04315 +1.0 3.0 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS02035 +1.0 1.8 hypothetical protein compare
BPHYT_RS25025 +1.0 1.0 acyl-CoA dehydrogenase compare
BPHYT_RS17935 +1.0 3.1 sulfite oxidase compare
BPHYT_RS14015 +1.0 2.7 hypothetical protein compare
BPHYT_RS29185 +1.0 1.1 sugar ABC transporter permease compare
BPHYT_RS29805 +1.0 1.8 lysine transporter LysE compare
BPHYT_RS23630 +1.0 2.4 hypothetical protein compare
BPHYT_RS15465 +1.0 2.0 tRNA-Gly compare
BPHYT_RS29875 +1.0 0.9 betaine-aldehyde dehydrogenase compare
BPHYT_RS14005 +1.0 3.4 ABC transporter compare
BPHYT_RS06385 +1.0 1.5 ribosomal RNA large subunit methyltransferase H compare


Specific Phenotypes

For 22 genes in this experiment

For in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 in Burkholderia phytofirmans PsJN

For in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 across organisms