Experiment set31S51 for Bacteroides thetaiotaomicron VPI-5482

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Chondroitin sulfate A sodium salt from bovine trachea; filtered 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
BT3642 +2.8 17.3 Na+-dependent transporter (NCBI ptt file) compare
BT4453 +2.0 2.2 6-pyruvoyl-tetrahydropterin synthase (NCBI ptt file) compare
BT0967 +1.7 1.9 hypothetical protein (NCBI ptt file) compare
BT4265 +1.6 2.1 GMP synthase (glutamine-hydrolyzing) (NCBI ptt file) compare
BT1127 +1.6 1.9 mobilization protein BmgB (NCBI ptt file) compare
BT2283 +1.4 2.2 hypothetical protein (NCBI ptt file) compare
BT2417 +1.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT4249 +1.4 1.5 hypothetical protein (NCBI ptt file) compare
BT1229 +1.3 1.7 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT1369 +1.2 1.8 hypothetical protein (NCBI ptt file) compare
BT1356 +1.2 4.9 putative capsule polysaccharide export protein (NCBI ptt file) compare
BT1340 +1.2 5.6 putative lipopolysaccharide biosynthesis glycosyltransferase (NCBI ptt file) compare
BT0878 +1.2 1.7 ABC transporter, ATP-binding protein (NCBI ptt file) compare
BT1947 +1.1 1.4 hypothetical protein (NCBI ptt file) compare
BT0067 +1.1 1.7 hypothetical protein (NCBI ptt file) compare
BT2027 +1.1 1.8 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT3856 +1.1 2.2 hypothetical protein (NCBI ptt file) compare
BT1146 +1.1 2.9 putative metallo-beta-lactamase (NCBI ptt file) compare
BT0869 +1.1 1.4 hypothetical protein (NCBI ptt file) compare
BT0816 +1.0 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1346 +1.0 4.4 capsule biosynthesis protein capA (NCBI ptt file) compare
BT1354 +1.0 4.9 putative flippase (NCBI ptt file) compare
BT4607 +1.0 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT0418 +1.0 2.1 outer membrane porin F precursor (NCBI ptt file) compare
BT4666 +1.0 2.3 putative K+ uptake system protein (NCBI ptt file) compare
BT1868 +1.0 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT1343 +1.0 4.3 putative capsule biosynthesis protein (NCBI ptt file) compare
BT1348 +1.0 4.2 CDP-abequose synthase (NCBI ptt file) compare
BT0616 +0.9 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT0782 +0.9 1.2 hypothetical protein (NCBI ptt file) compare
BT1345 +0.9 3.5 glycosyltransferase (NCBI ptt file) compare
BT0844 +0.9 0.8 hypothetical protein (NCBI ptt file) compare
BT1344 +0.9 4.2 putative glycosyltransferase (NCBI ptt file) compare
BT4531 +0.9 3.3 conserved hypothetical protein (NCBI ptt file) compare
BT0817 +0.9 1.9 lipoprotein, function unknown (NCBI ptt file) compare
BT3915 +0.9 1.1 hypothetical protein (NCBI ptt file) compare
BT0405 +0.9 1.2 hypothetical protein (NCBI ptt file) compare
BT1358 +0.9 2.8 putative transcriptional regulator (NCBI ptt file) compare
BT0327 +0.9 1.3 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) (NCBI ptt file) compare
BT1656 +0.9 1.7 putative transcriptional regulator (NCBI ptt file) compare
BT1112 +0.9 0.9 transposase (NCBI ptt file) compare
BT4381 +0.9 2.5 hypothetical protein (NCBI ptt file) compare
BT4346 +0.8 1.5 conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file) compare
BT1064 +0.8 2.7 conserved hypothetical protein (NCBI ptt file) compare
BT2122 +0.8 1.3 lysyl-tRNA synthetase (NCBI ptt file) compare
BT0178 +0.8 1.7 hypothetical protein (NCBI ptt file) compare
BT1352 +0.8 3.6 putative glycosyltransferase HI1698 (NCBI ptt file) compare
BT1347 +0.8 3.6 conserved hypothetical protein (NCBI ptt file) compare
BT0432 +0.8 3.1 putative endonuclease BB0411 (NCBI ptt file) compare
BT0479 +0.8 1.2 putative glycosyltransferase (NCBI ptt file) compare
BT1055 +0.8 1.4 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT0063 +0.8 1.2 hypothetical protein (NCBI ptt file) compare
BT4763 +0.8 1.6 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT3037 +0.8 2.7 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4610 +0.8 1.2 RecA (NCBI ptt file) compare
BT3641 +0.8 3.4 conserved hypothetical protein (NCBI ptt file) compare
BT2081 +0.8 2.8 hypothetical protein (NCBI ptt file) compare
BT0902 +0.7 1.5 hypothetical protein (NCBI ptt file) compare
BT2781 +0.7 2.6 putative mannose-1-phosphate guanylyltransferase (NCBI ptt file) compare
BT1355 +0.7 3.1 hypothetical protein (NCBI ptt file) compare
BT4271 +0.7 1.8 hypothetical protein (NCBI ptt file) compare
BT1706 +0.7 3.0 putative N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT0050 +0.7 2.8 putative glycosyltransferase (NCBI ptt file) compare
BT1320 +0.7 3.1 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) compare
BT0232 +0.7 1.9 putative protein involved in transposition (NCBI ptt file) compare
BT4086 +0.7 2.1 hypothetical protein (NCBI ptt file) compare
BT4685 +0.7 1.7 hypothetical protein (NCBI ptt file) compare
BT4261 +0.7 3.0 hypothetical protein (NCBI ptt file) compare
BT2979 +0.7 3.1 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT2208 +0.7 1.9 hypothetical protein (NCBI ptt file) compare
BT1494 +0.7 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT3041 +0.7 3.0 hypothetical protein (NCBI ptt file) compare
BT1539 +0.7 1.6 cytidine deaminase (NCBI ptt file) compare
BT0417 +0.7 1.3 hypothetical protein (NCBI ptt file) compare
BT2321 +0.7 1.6 putative integrase (NCBI ptt file) compare
BT4525 +0.7 2.4 hypothetical protein (NCBI ptt file) compare
BT1482 +0.7 1.4 two-component system response regulator (NCBI ptt file) compare
BT1093 +0.7 2.0 conserved hypothetical protein, putative TonB-dependent outer membrane receptor protein (NCBI ptt file) compare
BT4609 +0.7 2.6 conserved hypothetical protein (NCBI ptt file) compare
BT2612 +0.7 2.2 hypothetical protein (NCBI ptt file) compare
BT4646 +0.7 0.8 conserved hypothetical protein (NCBI ptt file) compare
BT0376 +0.7 0.9 putative transcriptional regulator (NCBI ptt file) compare
BT2580 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
BT2039 +0.7 2.3 cation efflux system protein, AcrB/AcrD/AcrF family protein (NCBI ptt file) compare
BT0868 +0.7 1.2 hypothetical protein (NCBI ptt file) compare
BT2471 +0.7 1.8 hypothetical protein (NCBI ptt file) compare
BT2045 +0.6 0.7 hypothetical protein (NCBI ptt file) compare
BT1516 +0.6 1.5 replicative DNA helicase (NCBI ptt file) compare
BT0227 +0.6 1.5 hypothetical protein (NCBI ptt file) compare
BT0157 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
BT0778 +0.6 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0091 +0.6 2.1 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1520 +0.6 1.5 putative transcriptional regulator (NCBI ptt file) compare
BT3643 +0.6 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT0231 +0.6 0.8 excisionase (NCBI ptt file) compare
BT2335 +0.6 2.2 integrase protein (NCBI ptt file) compare
BT1342 +0.6 3.2 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT2044 +0.6 1.6 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT0664 +0.6 2.1 hypothetical protein (NCBI ptt file) compare
BT3457 +0.6 1.7 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1704 +0.6 0.7 hypothetical protein (NCBI ptt file) compare
BT0453 +0.6 1.0 N-acylglucosamine 2-epimerase (NCBI ptt file) compare
BT1411 +0.6 0.9 methylated-DNA--protein-cysteine methyltransferase (NCBI ptt file) compare
BT4764 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
BT0723 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
BT2006 +0.6 0.7 hypothetical protein (NCBI ptt file) compare
BT4687 +0.6 2.0 hypothetical protein (NCBI ptt file) compare
BT1235 +0.6 2.1 AraC-type transcription regulator (NCBI ptt file) compare
BT0047 +0.6 1.8 putative glycosyltransferase (NCBI ptt file) compare
BT1616 +0.6 2.6 conserved hypothetical protein (NCBI ptt file) compare
BT3316 +0.6 2.5 hypothetical protein (NCBI ptt file) compare
BT0923 +0.6 0.7 putative periplasmic protein (NCBI ptt file) compare
BT0143 +0.6 2.8 putative transmembrane protein (NCBI ptt file) compare
BT0882 +0.6 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT1392 +0.6 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT3200 +0.6 2.1 putative N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT2597 +0.6 1.3 hypothetical protein (NCBI ptt file) compare
BT1198 +0.6 1.7 LemA protein (NCBI ptt file) compare
BT0501 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
BT0115 +0.6 1.7 arsenate reductase (NCBI ptt file) compare
BT1291 +0.6 2.0 spermidine/putrescine transport ATP-binding protein (NCBI ptt file) compare
BT0230 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT4677 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT2589 +0.5 2.3 type I restriction enzyme, M subunit (NCBI ptt file) compare
BT2059 +0.5 0.5 TonB (NCBI ptt file) compare
BT0119 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT3117 +0.5 1.7 putative oxidoreductase (NCBI ptt file) compare
BT1662 +0.5 2.6 putative molybdenum transport ATP-binding protein (NCBI ptt file) compare
BT1256 +0.5 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT0125 +0.5 1.8 NADH:ubiquinone oxidoreductase subunit (NCBI ptt file) compare
BT4746 +0.5 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0849 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT1259 +0.5 1.6 choloylglycine hydrolase (NCBI ptt file) compare
BT0820 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT0273 +0.5 1.9 Outer membrane binding protein for (+)-arabinogalactan (SusD-like) (from data) compare
BT4693 +0.5 1.9 cation efflux system protein (NCBI ptt file) compare
BT4777 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
BT4618 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT0751 +0.5 1.2 putative efflux pump component protein (NCBI ptt file) compare
BT1044 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT1709 +0.5 1.5 putative glycosyltransferase (NCBI ptt file) compare
BT4753 +0.5 0.6 hypothetical protein (NCBI ptt file) compare
BT0008 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT0842 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT4756 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
BT2042 +0.5 0.8 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT0585 +0.5 0.7 conserved hypothetical protein (NCBI ptt file) compare
BT0830 +0.5 2.3 hypothetical protein (NCBI ptt file) compare
BT4458 +0.5 2.2 pyridoxine kinase (NCBI ptt file) compare
BT4442 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT1187 +0.5 1.5 transcriptional regulator (NCBI ptt file) compare
BT1951 +0.5 0.8 Fe3+ ABC transporter, permease protein (NCBI ptt file) compare
BT3866 +0.5 3.5 ammonium-dependent carbamoyl phosphate synthetase CarB2 (EC 6.3.4.16) (from data) compare
BT2937 +0.5 1.3 putative glycosyltransferase (NCBI ptt file) compare
BT3843 +0.5 1.7 ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) compare
BT2040 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
BT0482 +0.5 2.1 tyrosine-protein kinase ptk (NCBI ptt file) compare
BT0850 +0.5 1.6 putative transcriptional regulator (NCBI ptt file) compare
BT2410 +0.5 1.7 putative acetyltransferase (NCBI ptt file) compare
BT0086 +0.5 1.6 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4498 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT1201 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT0211 +0.5 2.1 hypothetical protein (NCBI ptt file) compare
BT0880 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT0387 +0.5 1.9 NADH dehydrogenase subunit 2 (NCBI ptt file) compare
BT0191 +0.5 2.2 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT_0687 +0.5 1.7 hydroxylamine reductase (RefSeq) compare
BT4118 +0.5 2.0 putative two-component system response regulator, no kinase domain (NCBI ptt file) compare
BT3684 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
BT3690 +0.5 1.1 putative membrane protein (NCBI ptt file) compare
BT1172 +0.5 2.5 DNA primase/helicase (NCBI ptt file) compare
BT4641 +0.5 1.4 putative acetyltransferase (NCBI ptt file) compare
BT0588 +0.5 1.6 BexA: efflux pump for ciprofloxacin, lomefloxacin, and paraquat (from data) compare
BT1163 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT2996 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT0563 +0.5 1.1 putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file) compare
BT1693 +0.5 1.0 periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) compare
BT2117 +0.5 2.5 outer membrane protein, putative (NCBI ptt file) compare
BT1431 +0.5 1.3 putative DNA polymerase III epsilon chain (NCBI ptt file) compare
BT3213 +0.5 0.6 tRNA pseudouridine synthase B (NCBI ptt file) compare
BT1080 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT0044 +0.5 0.9 putative glycosyltransferase (NCBI ptt file) compare
BT1416 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT0411 +0.5 1.2 CysQ, sulfite synthesis pathway protein (NCBI ptt file) compare
BT0933 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT0021 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT1504 +0.5 1.3 hypothetical protein (NCBI ptt file) compare
BT0493 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
BT0412 +0.4 1.6 putative Na+/sulfate symporter (NCBI ptt file) compare
BT1915 +0.4 1.9 pyruvate carboxylase subunit A (NCBI ptt file) compare
BT0828 +0.4 0.7 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) compare
BT2699 +0.4 2.2 hypothetical protein (NCBI ptt file) compare
BT1262 +0.4 0.5 putative transcriptional regulator (NCBI ptt file) compare
BT1587 +0.4 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT0463 +0.4 1.1 glucose-1-phosphate thymidylyltransferase (NCBI ptt file) compare
BT2448 +0.4 2.6 conserved hypothetical protein (NCBI ptt file) compare
BT4317 +0.4 1.1 putative lipoprotein protein (NCBI ptt file) compare
BT1995 +0.4 2.5 hypothetical protein (NCBI ptt file) compare
BT0685 +0.4 1.8 putative Na+/H+ exchanger (NCBI ptt file) compare
BT2582 +0.4 2.2 conserved hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Chondroitin sulfate A sodium salt from bovine trachea in Bacteroides thetaiotaomicron VPI-5482

For carbon source Chondroitin sulfate A sodium salt from bovine trachea across organisms