Experiment set31S5 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Amylopectin from Potato; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
BT3395 -3.7 -5.0 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT2837 -3.5 -6.8 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT3164 -3.5 -5.3 quinolinate synthetase A (NCBI ptt file) compare
BT1857 -3.3 -3.9 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT2078 -3.3 -5.5 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT3320 -3.2 -4.9 dihydrodipicolinate reductase (NCBI ptt file) compare
BT3757 -3.2 -6.1 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT2401 -3.1 -3.7 threonine synthase (NCBI ptt file) compare
BT3733 -3.1 -7.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT2836 -3.0 -7.9 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT2074 -2.9 -6.1 ketol-acid reductoisomerase (NCBI ptt file) compare
BT3184 -2.8 -10.6 L-aspartate oxidase (NCBI ptt file) compare
BT1377 -2.7 -1.9 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT3698 SusG -2.7 -13.0 Alpha-amylase susG (EC 3.2.1.1) (from data) compare
BT3759 -2.7 -5.9 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT1843 -2.6 -4.4 adenylosuccinate synthetase (NCBI ptt file) compare
BT3701 SusD -2.6 -8.5 SusD, outer membrane protein (NCBI ptt file) compare
BT3761 -2.6 -2.5 N-succinylglutamate synthase (from data) compare
BT0202 -2.6 -2.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT2403 -2.6 -6.2 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT2402 -2.6 -7.7 phosphoglycerate mutase (NCBI ptt file) compare
BT1375 -2.6 -6.1 aspartokinase (NCBI ptt file) compare
BT3718 -2.5 -5.9 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT3719 -2.5 -1.7 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT2076 -2.5 -5.0 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT3760 -2.5 -1.7 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT1861 -2.4 -4.0 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT1970 -2.4 -4.6 glutamate dehydrogenase (NCBI ptt file) compare
BT3758 -2.4 -1.7 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT3705 SusR -2.3 -9.0 regulatory protein SusR (NCBI ptt file) compare
BT1378 -2.3 -1.6 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT2236 -2.3 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT2415 -2.3 -5.6 aspartate aminotransferase (NCBI ptt file) compare
BT3717 -2.3 -1.6 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1153 -2.3 -2.7 phosphoserine aminotransferase (NCBI ptt file) compare
BT2417 -2.3 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1858 -2.3 -2.7 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT3933 -2.3 -4.3 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT0532 -2.3 -2.2 anthranilate synthase component I (NCBI ptt file) compare
BT1336 -2.3 -2.6 putative translation initiation inhibitor (NCBI ptt file) compare
BT2077 -2.2 -4.3 acetolactate synthase large subunit (NCBI ptt file) compare
BT1746 -2.2 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT3981 -2.2 -3.0 hypothetical protein (NCBI ptt file) compare
BT1374 -2.2 -3.9 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT0738 -2.2 -2.1 serine hydroxymethyltransferase (NCBI ptt file) compare
BT3918 -2.1 -3.1 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT3549 -2.1 -1.5 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT3702 SusC -2.1 -6.6 SusC, outer membrane protein involved in starch binding (NCBI ptt file) compare
BT3193 -2.1 -9.7 putative coenzyme A transferase (NCBI ptt file) compare
BT3361 -2.1 -3.9 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT1379 -2.0 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT1859 -2.0 -1.9 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3936 -2.0 -1.3 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT0530 -2.0 -1.4 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT3699 SusF -2.0 -7.3 SusF: Outer membrane amylopectin-binding protein (from data) conserved
BT1860 -2.0 -2.7 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT0201 -1.9 -1.8 histidinol dehydrogenase (NCBI ptt file) compare
BT1381 -1.9 -3.3 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT2003 -1.9 -1.2 putative membrane peptidase (NCBI ptt file) compare
BT0674 -1.8 -2.1 carboxynorspermidine decarboxylase (NCBI ptt file) compare
BT0203 -1.8 -1.2 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT0529 -1.7 -1.2 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT0902 -1.7 -1.2 hypothetical protein (NCBI ptt file) compare
BT1844 -1.7 -3.2 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT3394 -1.7 -6.9 putative arginine decarboxylase (NCBI ptt file) compare
BT4191 -1.7 -4.9 hypothetical protein (NCBI ptt file) compare
BT2129 -1.7 -4.2 aspartate--ammonia ligase (NCBI ptt file) compare
BT0528 -1.7 -1.6 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT1059 -1.7 -4.4 putative UDP-glucose 4-epimerase (NCBI ptt file) compare
BT2080 -1.7 -2.2 L-cysteine desulfidase cdsB (from data) compare
BT0200 -1.7 -1.6 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT4211 -1.6 -1.1 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT2302 -1.6 -1.5 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2546 -1.6 -2.9 transcriptional regulator (NCBI ptt file) compare
BT4322 -1.6 -1.1 conserved hypothetical protein, with a diacylglycerol kinase catalytic domain (NCBI ptt file) compare
BT1152 -1.6 -1.5 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT2932 -1.6 -1.5 transcriptional regulator (NCBI ptt file) compare
BT1420 -1.5 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT1608 -1.5 -3.7 capsule biosynthesis protein capA (NCBI ptt file) compare
BT3703 SusB -1.5 -7.4 alpha-glucosidase SusB (NCBI ptt file) compare
BT1380 -1.5 -1.0 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
p5482_02 -1.5 -5.0 hypothetical protein (NCBI) compare
BT4258 -1.5 -4.4 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
BT4764 -1.5 -1.3 hypothetical protein (NCBI ptt file) compare
BT0892 -1.4 -1.0 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT2684 -1.4 -1.0 hypothetical protein (NCBI ptt file) compare
BT3935 -1.4 -2.3 aminotransferase (NCBI ptt file) compare
BT1580 -1.4 -1.3 lactoylglutathione lyase (NCBI ptt file) compare
BT0891 -1.4 -0.9 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT1058 -1.4 -6.8 two-component system sensor histidine kinase (NCBI ptt file) compare
BT0393 -1.4 -1.6 serine acetyltransferase (NCBI ptt file) compare
BT2742 -1.4 -0.9 integrase, site-specific recombinase (NCBI ptt file) compare
BT4025 -1.4 -0.9 hypothetical protein (NCBI ptt file) compare
BT1607 -1.4 -1.8 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT1536 -1.4 -2.1 ABC transporter permease (NCBI ptt file) compare
BT0533 -1.4 -0.9 tryptophan synthase beta chain (NCBI ptt file) compare
BT1476 -1.3 -2.0 aspartate aminotransferase (NCBI ptt file) compare
BT0833 -1.3 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1442 -1.3 -3.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT1422 -1.3 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT0527 -1.3 -1.3 tryptophan synthase alpha chain (NCBI ptt file) compare
BT1419 -1.3 -1.6 hypothetical protein (NCBI ptt file) compare
BT0596 -1.3 -1.1 putative transcriptional regulator (NCBI ptt file) compare
BT4699 -1.2 -1.4 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT3035 -1.2 -6.4 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT4442 -1.2 -1.1 hypothetical protein (NCBI ptt file) compare
BT1722 -1.2 -3.8 putative protein involved in capsular polysaccharide biosynthesis (NCBI ptt file) compare
BT0475 -1.2 -1.3 putative phosphoheptose isomerase (NCBI ptt file) compare
BT4421 -1.2 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1347 -1.2 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT3554 -1.1 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1081 -1.1 -1.4 recombination protein recR (NCBI ptt file) compare
BT3191 -1.1 -2.8 hypothetical protein (NCBI ptt file) compare
BT0556 -1.1 -1.7 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) compare
BT1312 -1.1 -2.0 serine protease precursor (NCBI ptt file) compare
BT0648 -1.1 -2.2 molybdopterin biosynthesis protein (NCBI ptt file) compare
BT0074 -1.1 -1.5 hypothetical protein (NCBI ptt file) compare
BT1679 -1.1 -1.4 hypothetical protein (NCBI ptt file) compare
BT3253 -1.1 -1.0 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT1114 -1.1 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT4036 -1.1 -1.8 hypothetical protein (NCBI ptt file) compare
BT1446 -1.1 -3.5 dethiobiotin synthetase (NCBI ptt file) compare
BT2845 -1.0 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT1733 -1.0 -1.2 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT0337 -1.0 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT0700 -1.0 -2.1 GTP pyrophosphokinase (NCBI ptt file) compare
BT1575 -1.0 -1.5 putative dehydrogenase (NCBI ptt file) compare
BT1142 -1.0 -1.6 hypothetical protein (NCBI ptt file) compare
BT0490 -1.0 -1.3 hypothetical protein (NCBI ptt file) compare
BT0924 -1.0 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1339 -1.0 -3.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (NCBI ptt file) compare
BT3073 -1.0 -4.1 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) compare
BT4029 -1.0 -1.4 hypothetical protein (NCBI ptt file) compare
BT1200 -1.0 -1.9 hypothetical protein (NCBI ptt file) compare
BT4644 -1.0 -1.6 putative anti-sigma factor (NCBI ptt file) compare
BT1445 -1.0 -1.8 putative biotin synthesis protein bioC (NCBI ptt file) compare
BT0827 -1.0 -1.7 hypothetical protein (NCBI ptt file) compare
BT1972 -1.0 -5.0 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT0100 -1.0 -2.2 hypothetical protein (NCBI ptt file) compare
BT2075 -1.0 -2.6 acyl-ACP thioesterase (NCBI ptt file) compare
BT1984 -0.9 -1.7 transcriptional regulator (NCBI ptt file) compare
BT1444 -0.9 -0.9 conserved hypothetical protein (NCBI ptt file) compare
BT1835 -0.9 -2.3 biotin synthase (NCBI ptt file) compare
BT0954 -0.9 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT1535 -0.9 -1.0 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0372 -0.9 -2.0 aldose 1-epimerase precursor (NCBI ptt file) compare
BT0376 -0.9 -0.8 putative transcriptional regulator (NCBI ptt file) compare
BT0782 -0.9 -0.8 hypothetical protein (NCBI ptt file) compare
BT1094 -0.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT0115 -0.9 -1.5 arsenate reductase (NCBI ptt file) compare
BT1342 -0.9 -2.6 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT1684 -0.9 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT4524 -0.9 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT4195 -0.9 -0.9 conserved hypothetical protein (NCBI ptt file) compare
BT1206 -0.9 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1617 -0.9 -2.0 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1530 -0.9 -2.4 putative outer membrane protein OprM precursor (NCBI ptt file) compare
BT0609 -0.9 -2.0 glycosyltransferase (NCBI ptt file) compare
BT0679 -0.9 -1.3 cation efflux system protein czcB (NCBI ptt file) compare
BT1313 -0.9 -1.0 muconate cycloisomerase (NCBI ptt file) compare
BT3920 -0.9 -0.8 conserved hypothetical protein (NCBI ptt file) compare
BT1033 -0.8 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT1515 -0.8 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1654 -0.8 -2.3 polysialic acid transport protein kpsD precursor (NCBI ptt file) compare
BT3503 -0.8 -0.9 glutaminase A (NCBI ptt file) compare
BT1326 -0.8 -0.6 TPR-domain containing protein (NCBI ptt file) compare
BT1348 -0.8 -1.7 CDP-abequose synthase (NCBI ptt file) compare
BT0758 -0.8 -0.9 acetyltransferase (NCBI ptt file) compare
BT2749 -0.8 -4.7 putative membrane-associated HD superfamily hydrolase (NCBI ptt file) compare
BT4513 -0.8 -1.9 putative rRNA methylase (NCBI ptt file) compare
BT4674 -0.8 -2.1 hypothetical protein (NCBI ptt file) compare
BT0531 -0.8 -1.1 anthranilate synthase component II (NCBI ptt file) compare
BT2954 -0.8 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT3491 -0.8 -1.4 glutaminase A (NCBI ptt file) compare
BT0084 -0.8 -1.5 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1555 -0.8 -2.4 dioxygenase, related to 2-nitropropane dioxygenase (NCBI ptt file) compare
BT2764 -0.8 -2.1 hypothetical protein (NCBI ptt file) compare
BT_t17 pseudo-tRNA -0.8 -1.4 tRNA-OTHER (RefSeq) compare
BT4751 -0.8 -1.1 hypothetical protein (NCBI ptt file) compare
BT1176 -0.8 -1.6 putative glycosyltransferase (NCBI ptt file) compare
BT1726 -0.8 -1.7 integrase (NCBI ptt file) compare
BT2083 -0.8 -2.3 hypothetical protein (NCBI ptt file) compare
BT4478 -0.8 -1.4 hypothetical protein (NCBI ptt file) compare
BT3075 -0.8 -4.9 NAD-dependent epimerase/dehydratase family protein (NCBI ptt file) compare
BT3615 -0.8 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT1343 -0.8 -2.0 putative capsule biosynthesis protein (NCBI ptt file) compare
BT2445 -0.8 -1.5 hypothetical protein (NCBI ptt file) compare
BT3224 -0.8 -3.0 putative lysine decarboxylase (NCBI ptt file) compare
BT0015 -0.8 -1.2 rteB, two-component system response regulator (NCBI ptt file) compare
BT0091 -0.8 -1.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT3883 -0.8 -1.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (NCBI ptt file) compare
BT3783 -0.8 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT3928 -0.8 -2.4 hypothetical protein (NCBI ptt file) compare
BT1421 -0.8 -1.5 hypothetical protein (NCBI ptt file) compare
BT0708 -0.8 -1.3 hypothetical protein (NCBI ptt file) compare
BT4612 -0.8 -3.5 conserved hypothetical protein (NCBI ptt file) compare
BT1979 -0.7 -1.7 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT0925 -0.7 -1.1 ABC transporter, ATP-binding protein (NCBI ptt file) compare
BT0913 -0.7 -1.7 putative Fe-S oxidoreductase (NCBI ptt file) compare
BT2381 -0.7 -1.7 putative acetyltransferase (NCBI ptt file) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Amylopectin from Potato in Bacteroides thetaiotaomicron VPI-5482

For carbon source Amylopectin from Potato across organisms