Experiment set31S29 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Red Arabinan from sugar-beet; filtered 5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
BT2837 -4.1 -10.3 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT3395 -3.9 -5.4 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT1857 -3.8 -5.2 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT2074 -3.8 -5.8 ketol-acid reductoisomerase (NCBI ptt file) compare
BT3759 -3.7 -6.2 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT2836 -3.7 -6.2 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT3733 -3.7 -8.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT2401 -3.6 -6.4 threonine synthase (NCBI ptt file) compare
BT3320 -3.5 -6.2 dihydrodipicolinate reductase (NCBI ptt file) compare
BT3933 -3.5 -4.7 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT1843 -3.4 -4.1 adenylosuccinate synthetase (NCBI ptt file) compare
BT2078 -3.4 -9.7 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT2403 -3.3 -7.0 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT1374 -3.3 -3.2 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT2402 -3.3 -8.6 homoserine phosphotransferase HomK (from data) compare
BT1861 -3.1 -3.7 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT0532 -3.1 -2.1 anthranilate synthase component I (NCBI ptt file) compare
BT3760 -3.1 -3.0 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT0202 -3.1 -3.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT3164 -3.0 -8.1 quinolinate synthetase A (NCBI ptt file) compare
BT2076 -3.0 -5.4 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT3757 -3.0 -6.6 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT3718 -3.0 -7.5 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT3184 -3.0 -13.0 L-aspartate oxidase (NCBI ptt file) compare
BT3981 -2.9 -3.4 hypothetical protein (NCBI ptt file) compare
BT1860 -2.9 -2.0 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT1379 -2.9 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT1153 -2.9 -2.8 phosphoserine aminotransferase (NCBI ptt file) compare
BT1378 -2.9 -2.0 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT0353 -2.8 -5.0 putative sugar epimerase/aldolase (NCBI ptt file) compare
BT1607 -2.8 -3.3 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT3761 -2.8 -4.2 N-succinylglutamate synthase (from data) compare
BT3717 -2.8 -4.3 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1858 -2.8 -4.6 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT3758 -2.8 -2.7 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT3719 -2.7 -3.6 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT0200 -2.7 -1.8 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT3549 -2.7 -4.4 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT0738 -2.6 -3.5 serine hydroxymethyltransferase (NCBI ptt file) compare
BT1859 -2.6 -2.5 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT1375 -2.6 -7.4 aspartokinase (NCBI ptt file) compare
BT0201 -2.6 -1.8 histidinol dehydrogenase (NCBI ptt file) compare
BT4644 -2.6 -2.5 putative anti-sigma factor (NCBI ptt file) compare
BT2077 -2.5 -4.8 acetolactate synthase large subunit (NCBI ptt file) compare
BT2415 -2.5 -7.8 aspartate aminotransferase (NCBI ptt file) compare
BT1970 -2.5 -6.4 glutamate dehydrogenase (NCBI ptt file) compare
BT3193 -2.4 -11.7 putative coenzyme A transferase (NCBI ptt file) compare
BT2932 -2.4 -2.2 transcriptional regulator (NCBI ptt file) compare
BT3918 -2.4 -3.8 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT0531 -2.3 -2.2 anthranilate synthase component II (NCBI ptt file) compare
BT0203 -2.3 -1.6 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT3936 -2.3 -2.2 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT1058 -2.3 -12.6 two-component system sensor histidine kinase (NCBI ptt file) compare
BT0530 -2.3 -2.7 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT3935 -2.3 -2.7 aminotransferase (NCBI ptt file) compare
BT0529 -2.2 -1.5 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT2080 -2.2 -3.3 L-cysteine desulfidase cdsB (from data) compare
BT1381 -2.2 -3.6 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT0700 -2.2 -3.0 GTP pyrophosphokinase (NCBI ptt file) compare
BT0528 -2.1 -2.1 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT1152 -2.1 -1.5 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT3394 -2.1 -9.2 putative arginine decarboxylase (NCBI ptt file) compare
BT2129 -2.1 -5.6 aspartate--ammonia ligase (NCBI ptt file) compare
BT0350 -2.0 -4.3 ribulokinase (EC 2.7.1.16) (from data) compare
BT3253 -2.0 -1.4 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT1380 -2.0 -1.4 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT1222 -2.0 -1.3 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT3361 -2.0 -5.4 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT0892 -2.0 -1.3 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT0891 -2.0 -1.3 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT0827 -2.0 -2.8 hypothetical protein (NCBI ptt file) compare
BT4191 -1.9 -6.8 hypothetical protein (NCBI ptt file) compare
BT1476 -1.9 -2.6 aspartate aminotransferase (NCBI ptt file) compare
BT1377 -1.9 -2.2 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT4322 -1.9 -1.7 conserved hypothetical protein, with a diacylglycerol kinase catalytic domain (NCBI ptt file) compare
BT1608 -1.8 -4.9 capsule biosynthesis protein capA (NCBI ptt file) compare
BT0833 -1.8 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0533 -1.8 -1.7 tryptophan synthase beta chain (NCBI ptt file) compare
p5482_02 -1.7 -4.9 hypothetical protein (NCBI) compare
BT0175 -1.7 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0527 -1.7 -2.5 tryptophan synthase alpha chain (NCBI ptt file) compare
BT1104 -1.6 -1.1 small heat shock protein (NCBI ptt file) compare
BT1761 -1.6 -5.4 hypothetical protein (NCBI ptt file) compare
BT1844 -1.6 -3.8 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT1443 -1.6 -4.1 8-amino-7-oxononanoate synthase (NCBI ptt file) compare
BT1733 -1.6 -2.2 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT1336 -1.6 -2.9 putative translation initiation inhibitor (NCBI ptt file) compare
BT2541 -1.6 -7.1 putative calcium-transporting ATPase (NCBI ptt file) compare
BT4211 -1.6 -2.0 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT0799 -1.6 -1.4 hypothetical protein (NCBI ptt file) compare
BT0356 -1.6 -1.1 aldose 1-epimerase precursor (NCBI ptt file) compare
BT1746 -1.5 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT0490 -1.5 -1.9 hypothetical protein (NCBI ptt file) compare
BT0352 -1.5 -1.0 conserved hypothetical protein (NCBI ptt file) compare
BT4258 -1.5 -5.2 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
BT1976 -1.5 -1.0 hypothetical protein (NCBI ptt file) compare
BT0758 -1.5 -1.4 acetyltransferase (NCBI ptt file) compare
BT3072 -1.5 -4.3 collagenase precursor (NCBI ptt file) compare
BT0363 -1.5 -4.5 putative outer membrane protein (NCBI ptt file) compare
BT0351 -1.4 -2.6 L-arabinose isomerase (NCBI ptt file) compare
BT1667 -1.4 -1.5 hypothetical protein (NCBI ptt file) compare
BT3554 -1.4 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT0355 -1.4 -2.4 L-arabinose/L-arabinobiose symporter (from data) compare
BT1442 -1.4 -3.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT1747 -1.4 -1.6 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT0220 -1.4 -1.9 hypothetical protein (NCBI ptt file) compare
BT0648 -1.4 -3.0 molybdopterin biosynthesis protein (NCBI ptt file) compare
BT_2008 -1.3 -1.2 hypothetical protein (RefSeq) compare
BT0932 -1.3 -1.7 hypothetical protein (NCBI ptt file) compare
BT4586 -1.3 -3.7 conserved hypothetical protein (NCBI ptt file) compare
BT1446 -1.3 -4.3 dethiobiotin synthetase (NCBI ptt file) compare
BT0649 -1.3 -1.9 thiamine biosynthesis protein ThiH (NCBI ptt file) compare
BT3762 -1.3 -2.7 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT1972 -1.3 -6.9 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT0427 -1.3 -1.4 xanthine phosphoribosyltransferase (NCBI ptt file) compare
BT0780 -1.3 -1.8 acetyltransferase (NCBI ptt file) compare
BT2155 -1.2 -3.3 hypothetical protein (NCBI ptt file) compare
BT1220 -1.2 -0.8 6-phosphogluconolactonase (NCBI ptt file) compare
BT4206 -1.2 -1.1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NCBI ptt file) compare
BT2798 -1.2 -8.8 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT4003 -1.2 -2.0 stationary-phase survival protein SurE (NCBI ptt file) compare
BT1758 -1.2 -2.1 fructose transporter (from data) compare
BT1656 -1.2 -1.5 putative transcriptional regulator (NCBI ptt file) compare
BT1059 -1.2 -3.2 putative UDP-glucose 4-epimerase (NCBI ptt file) compare
BT3912 -1.2 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0753 -1.2 -3.0 putative anti-sigma factor (NCBI ptt file) compare
BT1804 -1.2 -1.3 electron transfer flavoprotein beta-subunit (NCBI ptt file) compare
BT4557 -1.2 -4.7 hypothetical protein (NCBI ptt file) compare
BT0249 -1.2 -1.5 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file) compare
BT0321 -1.1 -1.3 cytidine/deoxycytidylate deaminase (NCBI ptt file) compare
BT1270 -1.1 -3.3 putative Na+/H+ antiporter (NCBI ptt file) compare
BT2742 -1.1 -1.0 integrase, site-specific recombinase (NCBI ptt file) compare
BT3168 -1.1 -5.0 putative Fe-S oxidoreductase (NCBI ptt file) compare
BT1979 -1.1 -2.5 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT0322 -1.1 -1.7 putative oxidoreductase (NCBI ptt file) compare
BT2977 -1.1 -5.8 peptidylprolyl isomerase (NCBI ptt file) compare
BT1324 -1.1 -2.3 phosphate ABC transporter, phosphate-binding protein (NCBI ptt file) compare
BT2749 -1.1 -6.6 putative membrane-associated HD superfamily hydrolase (NCBI ptt file) compare
BT3866 -1.0 -5.2 ammonium-dependent carbamoyl phosphate synthetase CarB2 (EC 6.3.4.16) (from data) compare
BT0349 -1.0 -3.4 conserved hypothetical protein (NCBI ptt file) compare
BT0366 -1.0 -6.0 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) conserved
BT3882 -1.0 -1.5 putative DNA binding protein (NCBI ptt file) compare
BT4774 -1.0 -1.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2172 -1.0 -5.9 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT0013 -1.0 -1.5 hypothetical protein (NCBI ptt file) compare
BT0954 -1.0 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT3724 -1.0 -2.0 cationic outer membrane protein precursor (NCBI ptt file) compare
BT1207 -1.0 -1.5 glycerate dehydrogenase (NADH-dependent) (NCBI ptt file) compare
BT3894 -1.0 -3.0 putative methyltransferase (NCBI ptt file) compare
BT3783 -1.0 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT3973 -1.0 -1.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) compare
BT4386 -1.0 -0.7 hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file) compare
BT0591 -1.0 -2.0 hypothetical protein (NCBI ptt file) compare
BT3928 -1.0 -3.6 hypothetical protein (NCBI ptt file) compare
BT1312 -1.0 -2.1 serine protease precursor (NCBI ptt file) compare
BT4670 -1.0 -3.6 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT1117 -1.0 -1.2 conserved hypothetical protein, with a cAMP-binding domain (NCBI ptt file) compare
BT4672 -1.0 -2.0 hypothetical protein (NCBI ptt file) compare
BT0582 -1.0 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1445 -0.9 -2.1 putative biotin synthesis protein bioC (NCBI ptt file) compare
BT0397 -0.9 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT0367 -0.9 -3.9 putative endo-arabinase (NCBI ptt file) compare
BT0692 -0.9 -1.3 putative calcineurin superfamily phosphohydrolase (NCBI ptt file) compare
BT0189 -0.9 -2.0 conserved hypothetical protein, putative anti-sigma factor (NCBI ptt file) compare
BT0548 -0.9 -1.4 diaminopimelate epimerase (NCBI ptt file) compare
BT1216 -0.9 -1.6 putative two-component system sensor protein, without kinase domain (NCBI ptt file) compare
BT0227 -0.9 -1.5 hypothetical protein (NCBI ptt file) compare
BT0402 -0.9 -1.6 hypothetical protein (NCBI ptt file) compare
BT2049 -0.9 -1.6 transcriptional regulator (NCBI ptt file) compare
BT2144 -0.9 -4.1 putative oxidoreductase (NCBI ptt file) compare
BT1561 -0.9 -0.6 hypothetical protein (NCBI ptt file) compare
BT0214 -0.9 -1.7 hypothetical protein (NCBI ptt file) compare
BT0368 -0.9 -2.7 alpha-L-arabinofuranosidase A precursor (NCBI ptt file) compare
BT3805 -0.9 -2.3 two-component system sensor histidine kinase (NCBI ptt file) compare
BT3770 -0.9 -0.8 transcriptional regulator (NCBI ptt file) compare
BT4138 -0.9 -3.6 putative aminotransferase (NCBI ptt file) compare
BT2010 -0.9 -1.1 hypothetical protein (NCBI ptt file) compare
BT1343 -0.9 -2.6 putative capsule biosynthesis protein (NCBI ptt file) compare
BT0081 -0.9 -1.8 hypothetical protein (NCBI ptt file) compare
BT0393 -0.9 -1.6 serine acetyltransferase (NCBI ptt file) compare
BT4590 -0.9 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT2787 -0.9 -6.9 GTP-binding elongation factor family protein TypA/BipA (NCBI ptt file) compare
BT1341 -0.9 -2.4 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
BT3462 -0.9 -2.1 TPR domain protein (NCBI ptt file) compare
BT1342 -0.9 -3.1 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT1081 -0.9 -1.2 recombination protein recR (NCBI ptt file) compare
BT2315 -0.9 -1.7 hypothetical protein (NCBI ptt file) compare
BT2691 -0.9 -2.3 methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT4569 -0.9 -1.8 hypothetical protein (NCBI ptt file) compare
BT0115 -0.9 -1.8 arsenate reductase (NCBI ptt file) compare
BT0556 -0.9 -1.6 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) compare
BT2161 -0.9 -1.2 50S ribosomal protein L9 (NCBI ptt file) compare
BT4595 -0.9 -1.7 hypothetical protein (NCBI ptt file) compare
BT0788 -0.8 -2.4 succinyl-CoA synthetase beta chain (NCBI ptt file) compare
BT2539 -0.8 -2.1 rubredoxin (NCBI ptt file) compare
BT0605 -0.8 -2.3 putative polysaccharide export protein (NCBI ptt file) compare
BT0927 -0.8 -0.7 two-component system sensor histidine kinase (NCBI ptt file) compare
BT2649 -0.8 -2.9 ThiF family protein, ubiquitin-activating enzyme (NCBI ptt file) compare
BT4325 -0.8 -2.0 hypothetical protein (NCBI ptt file) compare
BT1363 -0.8 -0.7 DNA Pol III Epsilon Chain (NCBI ptt file) compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Red Arabinan from sugar-beet in Bacteroides thetaiotaomicron VPI-5482

For carbon source Red Arabinan from sugar-beet across organisms