Experiment set31S29 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Red Arabinan from sugar-beet; filtered 5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
BT3642 +5.0 35.0 Na+-dependent transporter (NCBI ptt file) compare
BT4453 +2.4 1.8 6-pyruvoyl-tetrahydropterin synthase (NCBI ptt file) compare
BT2283 +2.2 3.6 hypothetical protein (NCBI ptt file) compare
BT0405 +1.5 2.3 hypothetical protein (NCBI ptt file) compare
BT1127 +1.5 1.7 mobilization protein BmgB (NCBI ptt file) compare
BT1146 +1.5 4.4 putative metallo-beta-lactamase (NCBI ptt file) compare
BT3839 +1.5 2.2 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0844 +1.5 1.5 hypothetical protein (NCBI ptt file) compare
BT0238 +1.4 2.7 transcriptional regulator (NCBI ptt file) compare
BT4607 +1.4 2.9 conserved hypothetical protein (NCBI ptt file) compare
BT1947 +1.3 1.7 hypothetical protein (NCBI ptt file) compare
BT0782 +1.3 1.4 hypothetical protein (NCBI ptt file) compare
BT4646 +1.3 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT1072 +1.2 2.1 hypothetical protein (NCBI ptt file) compare
BT3856 +1.2 2.6 hypothetical protein (NCBI ptt file) compare
BT1693 +1.2 2.9 periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) compare
BT0816 +1.1 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1962 +1.1 2.1 hypothetical protein (NCBI ptt file) compare
BT4455 +1.1 2.6 oxidoreductase, putative glycolate oxidase (NCBI ptt file) compare
BT2281 +0.9 1.7 hypothetical protein (NCBI ptt file) compare
BT1948 +0.9 1.9 hypothetical protein (NCBI ptt file) compare
BT0418 +0.9 1.8 outer membrane porin F precursor (NCBI ptt file) compare
BT3643 +0.9 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT1903 +0.9 2.8 hypothetical protein (NCBI ptt file) compare
BT1230 +0.9 1.3 hypothetical protein (NCBI ptt file) compare
BT4531 +0.9 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT0492 +0.9 3.3 integral membrane protein (NCBI ptt file) compare
BT0327 +0.9 1.4 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) (NCBI ptt file) compare
BT0737 +0.9 3.5 formate--tetrahydrofolate ligase (NCBI ptt file) compare
BT1198 +0.9 2.0 LemA protein (NCBI ptt file) compare
BT4641 +0.9 2.7 putative acetyltransferase (NCBI ptt file) compare
BT0017 +0.9 1.9 hypothetical protein (NCBI ptt file) compare
BT4249 +0.9 0.8 hypothetical protein (NCBI ptt file) compare
BT0463 +0.9 2.1 glucose-1-phosphate thymidylyltransferase (NCBI ptt file) compare
BT1390 +0.8 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0949 +0.8 1.3 hypothetical protein (NCBI ptt file) compare
BT1524 +0.8 1.2 hypothetical protein (NCBI ptt file) compare
BT2979 +0.8 3.0 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT2841 +0.8 2.6 pyruvate kinase (NCBI ptt file) compare
BT1227 +0.8 2.9 conserved hypothetical protein (NCBI ptt file) compare
BT0199 +0.8 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0933 +0.8 2.7 hypothetical protein (NCBI ptt file) compare
BT4025 +0.8 1.3 hypothetical protein (NCBI ptt file) compare
BT1969 +0.8 4.7 NADP-dependent malate dehydrogenase (NCBI ptt file) compare
BT0242 +0.8 1.7 putative polysaccharide deacetylase (NCBI ptt file) compare
BT0246 +0.8 3.0 putative integral membrane protein, with calcineurin-like phosphoesterase domain (NCBI ptt file) compare
BT1232 +0.8 1.3 hypothetical protein (NCBI ptt file) compare
BT2537 +0.8 2.1 hypothetical protein (NCBI ptt file) compare
BT0549 +0.8 1.3 putative thioredoxin (NCBI ptt file) compare
BT0067 +0.7 1.1 hypothetical protein (NCBI ptt file) compare
BT1109 +0.7 2.4 ferritin A (NCBI ptt file) compare
BT4028 +0.7 1.1 hypothetical protein (NCBI ptt file) compare
BT4730 +0.7 1.8 hypothetical protein (NCBI ptt file) compare
BT0728 +0.7 2.5 transcriptional regulator (NCBI ptt file) compare
BT0087 +0.7 1.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4381 +0.7 2.1 hypothetical protein (NCBI ptt file) compare
BT2612 +0.7 2.5 hypothetical protein (NCBI ptt file) compare
BT0877 +0.7 1.0 ferredoxin domain containing protein (NCBI ptt file) compare
BT1899 +0.7 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0681 +0.7 1.6 two-component system sensor histidine kinase (NCBI ptt file) compare
BT0028 +0.7 1.7 alkaline phosphatase (NCBI ptt file) compare
BT0033 +0.7 1.5 hypothetical protein (NCBI ptt file) compare
BT3356 +0.7 2.9 6-phosphofructokinase (NCBI ptt file) compare
BT4582 +0.7 3.7 amidophosphoribosyltransferase precursor (NCBI ptt file) compare
BT1256 +0.7 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT2177 +0.7 2.8 putative membrane protein (NCBI ptt file) compare
BT2976 +0.7 3.0 FKBP-type peptidyl-prolyl cis-trans isomerase, outer membrane protein precursor (NCBI ptt file) compare
BT1068 +0.7 2.0 hypothetical protein (NCBI ptt file) compare
BT0875 +0.7 2.9 beta-ureidopropionase (NCBI ptt file) compare
BT1641 +0.7 1.1 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT4483 +0.7 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT2040 +0.7 3.0 hypothetical protein (NCBI ptt file) compare
BT2853 +0.7 1.1 hypothetical protein (NCBI ptt file) compare
BT0021 +0.7 2.2 hypothetical protein (NCBI ptt file) compare
BT1637 +0.7 2.1 hypothetical protein (NCBI ptt file) compare
BT3022 +0.7 0.9 hypothetical protein (NCBI ptt file) compare
BT1431 +0.7 1.7 putative DNA polymerase III epsilon chain (NCBI ptt file) compare
BT2027 +0.7 1.1 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT2099 +0.7 1.9 Fe3+ ABC transporter, permease (NCBI ptt file) compare
BT1539 +0.7 1.6 cytidine deaminase (NCBI ptt file) compare
BT1439 +0.7 5.1 Outer membrane binding protein for vancomycin (SusD-like) (from data) compare
BT0560 +0.7 1.5 outer membrane efflux protein (NCBI ptt file) compare
BT0298 +0.7 1.3 cation efflux system protein (outer membrane protein) (NCBI ptt file) compare
BT0004 +0.7 1.2 hypothetical protein (NCBI ptt file) compare
BT2287 +0.7 2.5 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT0215 +0.7 1.2 iron uptake regulatory protein (NCBI ptt file) compare
BT1396 +0.7 1.9 transcription regulator, AraC family (NCBI ptt file) compare
BT0313 +0.7 1.0 flavodoxin (NCBI ptt file) compare
BT2684 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
BT2696 +0.6 2.2 hypothetical protein (NCBI ptt file) compare
BT1005 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
BT2059 +0.6 0.6 TonB (NCBI ptt file) compare
BT2973 +0.6 2.5 transcriptional regulator (NCBI ptt file) compare
BT4738 +0.6 3.9 formate acetyltransferase (NCBI ptt file) compare
BT4556 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
BT3141 +0.6 2.1 hypothetical protein (NCBI ptt file) compare
BT0704 +0.6 1.1 phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) compare
BT1567 +0.6 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT3039 +0.6 3.1 hypothetical protein (NCBI ptt file) compare
BT1276 +0.6 1.7 L-fucose mutarotase FucU (EC 5.1.3.29) (from data) compare
BT1080 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
BT0723 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
BT0380 +0.6 1.8 nucleotide sugar epimerase (NCBI ptt file) compare
BT1986 +0.6 2.4 putative ribose 5-phosphate isomerase (NCBI ptt file) compare
BT1369 +0.6 0.8 hypothetical protein (NCBI ptt file) compare
BT2043 +0.6 1.4 hypothetical protein (NCBI ptt file) compare
BT1329 +0.6 1.2 putative thiol peroxidase (NCBI ptt file) compare
BT4370 +0.6 1.9 putative hemolysin (NCBI ptt file) compare
BT3486 +0.6 2.9 N-acetylgalactosamine-6-sulfatase precursor (NCBI ptt file) compare
BT0411 +0.6 1.5 CysQ, sulfite synthesis pathway protein (NCBI ptt file) compare
BT0188 +0.6 1.0 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT3738 +0.6 5.3 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) compare
BT0431 +0.6 2.1 conserved hypothetical protein with conserved domain (NCBI ptt file) compare
BT1440 +0.6 3.3 TonB-dependent receptor for vancomycin (SusC-like) (from data) compare
BT4777 +0.6 2.0 hypothetical protein (NCBI ptt file) compare
BT2208 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
BT1438 +0.6 2.7 putative membrane efflux protein (NCBI ptt file) compare
BT3438 +0.6 1.3 hypothetical protein (NCBI ptt file) compare
BT0479 +0.6 0.8 putative glycosyltransferase (NCBI ptt file) compare
BT1229 +0.6 0.7 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT1330 +0.6 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT2042 +0.6 0.8 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT2744 +0.6 3.0 acetyltransferase (NCBI ptt file) compare
BT3798 +0.6 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT0335 +0.6 1.8 putative ATPase (NCBI ptt file) compare
BT0240 +0.6 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT4735 +0.6 1.4 hypothetical protein (NCBI ptt file) compare
BT3832 +0.6 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT0967 +0.6 0.5 hypothetical protein (NCBI ptt file) compare
BT4429 +0.5 2.1 putative pteridine-dependent dioxygenase (NCBI ptt file) compare
BT1482 +0.5 1.1 two-component system response regulator (NCBI ptt file) compare
BT1958 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT4598 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
BT4346 +0.5 0.9 conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file) compare
BT0106 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0682 +0.5 1.8 two-component system response regulator (NCBI ptt file) compare
BT4649 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT4141 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT3544 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT1477 +0.5 2.5 conserved hypothetical protein (NCBI ptt file) compare
BT4697 +0.5 3.7 transcriptional regulator (NCBI ptt file) compare
BT0669 +0.5 1.4 putative cation efflux system protein (NCBI ptt file) compare
BT0068 +0.5 2.6 hypothetical protein (NCBI ptt file) compare
BT2329 +0.5 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT4773 +0.5 1.3 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1633 +0.5 1.8 mannose-1-phosphate guanyltransferase (NCBI ptt file) compare
BT0513 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT0404 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
BT0472 +0.5 1.0 putative acyltransferase in colanic acid biosynthesis (NCBI ptt file) compare
BT3737 +0.5 0.6 hypothetical protein (NCBI ptt file) compare
BT0282 +0.5 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT4423 +0.5 1.6 xylulose kinase (NCBI ptt file) compare
BT1196 +0.5 2.1 pyruvate carboxylase subunit B) (NCBI ptt file) compare
BT0777 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT1884 +0.5 1.7 cold shock protein, putative DNA-binding protein (NCBI ptt file) compare
BT1715 +0.5 2.2 putative polysaccharide biosynthesis protein (NCBI ptt file) compare
BT1194 +0.5 1.1 outer membrane protein, OmpA family (NCBI ptt file) compare
BT1974 +0.5 2.6 metallopeptidase family M24, putative Xaa-Pro dipeptidase (NCBI ptt file) compare
BT1494 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT1115 +0.5 1.2 aldo/keto reductase (NCBI ptt file) compare
BT0977 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
BT3812 +0.5 1.7 phosphoribosylaminoimidazole carboxy formyl formyltransferase; inosine-monophosphate cyclohydrolase; bifunctional purine biosynthesis protein purH (NCBI ptt file) compare
BT0152 +0.5 1.7 acetyl esterase (acetylxylosidase) (NCBI ptt file) compare
BT3937 +0.5 1.7 TPR-domain containing protein (NCBI ptt file) compare
BT1533 +0.5 2.6 conserved hypothetical protein (NCBI ptt file) compare
BT1098 +0.5 1.3 methylglyoxal synthase (NCBI ptt file) compare
BT2131 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT0241 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT0546 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1565 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
BT4237 +0.5 1.6 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT0158 +0.5 1.9 Na(+)/H(+) antiporter (NCBI ptt file) compare
BT4023 +0.5 1.6 transposase (NCBI ptt file) compare
BT1202 +0.5 0.6 UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
p5482_14 +0.5 1.9 hypothetical protein (NCBI) compare
BT0069 +0.5 2.4 conserved hypothetical protein (NCBI ptt file) compare
BT0730 +0.5 1.3 putative mRNA-binding protein (NCBI ptt file) compare
BT4763 +0.5 0.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1576 +0.5 0.6 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT4678 +0.5 2.4 L-serine dehydratase (NCBI ptt file) compare
BT1920 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
BT1218 +0.4 1.9 conserved hypothetical protein, with conserved domain (NCBI ptt file) compare
BT3942 +0.4 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT4478 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
BT4242 +0.4 1.6 putative transporter (NCBI ptt file) compare
BT4034 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
BT4768 +0.4 1.0 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1388 +0.4 0.8 integral membrane protein (NCBI ptt file) compare
BT1197 +0.4 0.9 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1187 +0.4 1.2 transcriptional regulator (NCBI ptt file) compare
BT0499 +0.4 1.4 cation efflux system protein (NCBI ptt file) compare
BT0930 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
BT2815 +0.4 1.2 putative mutT family protein (NCBI ptt file) compare
BT2292 +0.4 1.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1541 +0.4 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1990 +0.4 0.7 hypothetical protein (NCBI ptt file) compare
BT1827 +0.4 2.3 transposase (NCBI ptt file) compare
BT4643 +0.4 1.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT3117 +0.4 1.3 putative oxidoreductase (NCBI ptt file) compare
BT4009 +0.4 2.3 integrase (NCBI ptt file) compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Red Arabinan from sugar-beet in Bacteroides thetaiotaomicron VPI-5482

For carbon source Red Arabinan from sugar-beet across organisms