Experiment set31S26 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Xylan from corn core; autoclaved 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
BT3642 +2.9 21.5 Na+-dependent transporter (NCBI ptt file) compare
BT0967 +1.9 2.2 hypothetical protein (NCBI ptt file) compare
BT1202 +1.9 3.0 UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT1704 +1.6 2.2 hypothetical protein (NCBI ptt file) compare
BT2283 +1.5 2.4 hypothetical protein (NCBI ptt file) compare
BT4453 +1.3 1.5 6-pyruvoyl-tetrahydropterin synthase (NCBI ptt file) compare
BT4753 +1.3 1.7 hypothetical protein (NCBI ptt file) compare
BT3856 +1.2 2.7 hypothetical protein (NCBI ptt file) compare
BT0378 +1.2 2.0 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) compare
BT3839 +1.1 1.6 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT1539 +1.1 2.8 cytidine deaminase (NCBI ptt file) compare
BT1558 +1.1 3.4 hypothetical protein (NCBI ptt file) compare
BT0619 +1.1 1.1 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file) compare
BT2027 +1.0 1.8 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT0937 +1.0 1.9 hypothetical protein (NCBI ptt file) compare
BT1330 +1.0 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1081 +1.0 2.1 recombination protein recR (NCBI ptt file) compare
BT0418 +1.0 2.1 outer membrane porin F precursor (NCBI ptt file) compare
BT4025 +1.0 1.6 hypothetical protein (NCBI ptt file) compare
BT4730 +1.0 2.6 hypothetical protein (NCBI ptt file) compare
BT1256 +0.9 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0238 +0.9 2.5 transcriptional regulator (NCBI ptt file) compare
BT1329 +0.9 1.8 putative thiol peroxidase (NCBI ptt file) compare
BT1470 +0.9 1.5 putative two-component system sensor histidine kinase (NCBI ptt file) compare
BT1482 +0.9 1.9 two-component system response regulator (NCBI ptt file) compare
BT1262 +0.9 1.1 putative transcriptional regulator (NCBI ptt file) compare
BT1369 +0.9 1.3 hypothetical protein (NCBI ptt file) compare
BT1186 +0.9 1.8 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT1146 +0.9 2.3 putative metallo-beta-lactamase (NCBI ptt file) compare
BT2045 +0.9 0.9 hypothetical protein (NCBI ptt file) compare
BT1466 +0.8 1.6 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT1947 +0.8 1.0 hypothetical protein (NCBI ptt file) compare
BT1451 +0.8 1.7 hypothetical protein (NCBI ptt file) compare
BT4416 +0.8 2.3 Cu2+ homeostasis protein CutC (NCBI ptt file) compare
BT3920 +0.8 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT0549 +0.8 1.4 putative thioredoxin (NCBI ptt file) compare
BT1055 +0.8 1.3 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT0095 +0.8 2.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1962 +0.8 1.7 hypothetical protein (NCBI ptt file) compare
BT0877 +0.8 1.2 ferredoxin domain containing protein (NCBI ptt file) compare
BT0751 +0.8 1.9 putative efflux pump component protein (NCBI ptt file) compare
BT1855 +0.8 1.7 putative methyl transferase (NCBI ptt file) compare
BT1494 +0.8 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT1576 +0.8 1.1 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT1693 +0.7 1.7 periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) compare
BT2116 +0.7 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT2266 +0.7 2.1 hypothetical protein (NCBI ptt file) compare
BT1435 +0.7 2.5 hypothetical protein (NCBI ptt file) compare
BT2236 +0.7 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1569 +0.7 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT4414 +0.7 2.1 hypothetical protein (NCBI ptt file) compare
BT1594 +0.7 2.1 putative ferredoxin (NCBI ptt file) compare
BT3267 +0.7 3.2 adenine phosphoribosyltransferase (NCBI ptt file) compare
BT1699 +0.7 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT0293 +0.7 2.5 hypothetical protein (NCBI ptt file) compare
BT1105 +0.7 1.9 phosphoglycerate mutase 1 (NCBI ptt file) compare
BT4346 +0.7 1.2 conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file) compare
BT4304 +0.7 4.8 putative glycosyltransferase (NCBI ptt file) compare
BT4317 +0.7 1.5 putative lipoprotein protein (NCBI ptt file) compare
BT1817 +0.7 1.6 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4610 +0.6 1.1 RecA (NCBI ptt file) compare
BT1198 +0.6 1.5 LemA protein (NCBI ptt file) compare
BT1276 +0.6 1.8 L-fucose mutarotase FucU (EC 5.1.3.29) (from data) compare
BT1215 +0.6 2.3 ABC transporter, permease protein (NCBI ptt file) compare
BT4590 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0361 +0.6 2.5 hypothetical protein (NCBI ptt file) compare
BT4525 +0.6 2.4 hypothetical protein (NCBI ptt file) compare
BT3915 +0.6 0.7 hypothetical protein (NCBI ptt file) compare
BT0959 +0.6 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT1504 +0.6 2.7 hypothetical protein (NCBI ptt file) compare
BT1868 +0.6 0.8 conserved hypothetical protein (NCBI ptt file) compare
BT2057 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
BT1764 +0.6 2.7 conserved hypothetical protein (NCBI ptt file) compare
BT0159 +0.6 2.5 conserved hypothetical protein (NCBI ptt file) compare
BT2040 +0.6 2.7 hypothetical protein (NCBI ptt file) compare
BT1117 +0.6 1.1 conserved hypothetical protein, with a cAMP-binding domain (NCBI ptt file) compare
BT2830 +0.6 2.9 DNA-binding protein HU-beta (NCBI ptt file) compare
BT4305 +0.6 4.4 putative alpha-amylase (NCBI ptt file) compare
BT0232 +0.6 1.6 putative protein involved in transposition (NCBI ptt file) compare
BT0946 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
BT0611 +0.6 0.8 glycosyltransferase (NCBI ptt file) compare
BT1376 +0.6 1.2 putative ATP-binding protein involved in cell division (NCBI ptt file) compare
BT1903 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
BT0856 +0.6 1.7 two-component system response regulator (NCBI ptt file) compare
BT4422 +0.6 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT3077 +0.6 0.3 ribonuclease R (NCBI ptt file) compare
BT2417 +0.6 0.7 conserved hypothetical protein (NCBI ptt file) compare
BT3926 +0.6 1.5 putative peptidase (NCBI ptt file) compare
BT2979 +0.6 2.6 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT1767 +0.6 2.2 hypothetical protein (NCBI ptt file) compare
BT4449 +0.5 1.6 putative dehydrogenase (NCBI ptt file) compare
BT4677 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT0153 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT0204 +0.5 3.0 conserved hypothetical protein (NCBI ptt file) compare
BT2302 +0.5 1.0 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4607 +0.5 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0608 +0.5 2.0 glycosyltransferase (NCBI ptt file) compare
BT4429 +0.5 2.1 putative pteridine-dependent dioxygenase (NCBI ptt file) compare
BT0338 +0.5 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1021 +0.5 1.4 arabinosidase (NCBI ptt file) compare
BT2010 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT4390 +0.5 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT3211 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT1633 +0.5 2.0 mannose-1-phosphate guanyltransferase (NCBI ptt file) compare
BT0667 +0.5 1.8 signal peptidase I (SPase I) (NCBI ptt file) compare
BT4432 +0.5 1.7 putative non-specific DNA-binding protein HU-1 (NCBI ptt file) compare
BT0050 +0.5 2.3 putative glycosyltransferase (NCBI ptt file) compare
BT4609 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT3937 +0.5 1.8 TPR-domain containing protein (NCBI ptt file) compare
BT2815 +0.5 1.3 putative mutT family protein (NCBI ptt file) compare
BT1008 +0.5 2.1 xylanase (NCBI ptt file) compare
BT1088 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT1229 +0.5 0.6 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT1456 +0.5 1.2 thioredoxin (TRX) (NCBI ptt file) compare
BT0044 +0.5 1.0 putative glycosyltransferase (NCBI ptt file) compare
BT0591 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT3356 +0.5 2.6 6-phosphofructokinase (NCBI ptt file) compare
BT0514 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0449 +0.5 2.3 conserved hypothetical protein, putative S-layer related protein precursor (NCBI ptt file) compare
BT3466 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
BT4531 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0188 +0.5 0.8 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1827 +0.5 2.4 transposase (NCBI ptt file) compare
BT0933 +0.5 2.2 hypothetical protein (NCBI ptt file) compare
BT3037 +0.5 1.7 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4763 +0.5 0.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1214 +0.5 1.2 putative ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0426 +0.5 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT4532 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT0143 +0.5 2.1 putative transmembrane protein (NCBI ptt file) compare
BT1714 +0.5 2.1 sialic acid synthase (N-acetylneuraminate synthase) (NCBI ptt file) compare
BT0016 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
BT2059 +0.5 0.4 TonB (NCBI ptt file) compare
BT1194 +0.5 1.2 outer membrane protein, OmpA family (NCBI ptt file) compare
BT1974 +0.5 2.5 metallopeptidase family M24, putative Xaa-Pro dipeptidase (NCBI ptt file) compare
BT0885 +0.4 0.7 putative cation efflux pump (NCBI ptt file) compare
BT1258 +0.4 0.9 putative acetyltransferase (NCBI ptt file) compare
BT0165 +0.4 1.9 peptidyl-prolyl cis-trans isomerase (NCBI ptt file) compare
BT4303 +0.4 3.6 glycogen debranching enzyme-related protein (4-alpha-glucanotransferase) (NCBI ptt file) compare
BT2537 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
BT1273 +0.4 1.9 L-fucose isomerase (NCBI ptt file) compare
BT1793 +0.4 1.5 integrase protein (NCBI ptt file) compare
BT0351 +0.4 1.6 L-arabinose isomerase (NCBI ptt file) compare
BT0693 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
BT0411 +0.4 1.1 CysQ, sulfite synthesis pathway protein (NCBI ptt file) compare
BT1334 +0.4 1.6 PhoH-like protein (NCBI ptt file) compare
BT3769 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
BT1932 +0.4 2.6 hypothetical protein (NCBI ptt file) compare
BT0230 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1701 +0.4 0.8 hypothetical protein (NCBI ptt file) compare
BT1031 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT2287 +0.4 1.6 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1953 +0.4 2.2 putative TonB-linked outer membrane receptor (NCBI ptt file) compare
BT1458 +0.4 1.5 putative two-component system sensor histidine kinase (NCBI ptt file) compare
BT2471 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
BT4643 +0.4 1.4 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT2115 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
BT0766 +0.4 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT4141 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
BT1616 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT0723 +0.4 0.6 hypothetical protein (NCBI ptt file) compare
BT1427 +0.4 1.4 tetracycline resistance element mobilization regulatory protein rteC (NCBI ptt file) compare
BT3694 +0.4 0.8 glycosyltransferase (NCBI ptt file) compare
BT1304 +0.4 0.6 putative transcriptional regulator (NCBI ptt file) compare
BT4738 +0.4 2.4 formate acetyltransferase (NCBI ptt file) compare
BT4381 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
BT2021 +0.4 1.9 conserved hypothetical protein, putative non-specific DNA-binding protein (NCBI ptt file) compare
BT0018 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
BT3197 +0.4 0.3 hypothetical protein (NCBI ptt file) compare
BT1982 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
BT0621 +0.4 0.6 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file) compare
BT1579 +0.4 1.9 hypothetical protein (NCBI ptt file) compare
BT1418 +0.4 1.9 quinol oxidase (NCBI ptt file) compare
BT0844 +0.4 0.4 hypothetical protein (NCBI ptt file) compare
BT2604 +0.4 1.7 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2218 +0.4 1.8 hypothetical protein (NCBI ptt file) compare
BT1393 +0.4 2.1 4-carboxymuconolactone decarboxylase (NCBI ptt file) compare
BT0865 +0.4 1.3 putative chitobiase (NCBI ptt file) compare
BT1338 +0.4 1.1 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) compare
BT4733 +0.4 0.8 conserved hypothetical protein (NCBI ptt file) compare
BT4582 +0.4 2.0 amidophosphoribosyltransferase precursor (NCBI ptt file) compare
BT2520 +0.4 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT4197 +0.4 1.8 hypothetical protein (NCBI ptt file) compare
BT1503 +0.4 2.2 integrase (NCBI ptt file) compare
BT0106 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT0940 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
BT1064 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT3137 +0.4 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT1315 +0.4 1.3 ribonuclease BN (NCBI ptt file) compare
BT1439 +0.4 2.9 Outer membrane binding protein for vancomycin (SusD-like) (from data) compare
BT1541 +0.4 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0730 +0.4 1.1 putative mRNA-binding protein (NCBI ptt file) compare
BT2972 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1302 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
BT2766 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
BT2127 +0.4 1.5 putative beta-phosphoglucomutase (NCBI ptt file) compare
BT0980 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT4034 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
BT0737 +0.4 1.5 formate--tetrahydrofolate ligase (NCBI ptt file) compare
BT1754 +0.4 2.2 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in carbon source experiments

For carbon source Xylan from corn core across organisms