Experiment set31S20 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

amylopectin from maize; autoclaved 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
BT3642 +7.2 38.1 Na+-dependent transporter (NCBI ptt file) compare
BT4453 +3.4 2.2 6-pyruvoyl-tetrahydropterin synthase (NCBI ptt file) compare
BT0238 +2.2 2.8 transcriptional regulator (NCBI ptt file) compare
BT0844 +1.9 1.9 hypothetical protein (NCBI ptt file) compare
BT0405 +1.9 2.9 hypothetical protein (NCBI ptt file) compare
BT3737 +1.8 2.7 hypothetical protein (NCBI ptt file) compare
BT2099 +1.6 2.6 Fe3+ ABC transporter, permease (NCBI ptt file) compare
BT2122 +1.6 2.8 lysyl-tRNA synthetase (NCBI ptt file) compare
BT4610 +1.5 2.5 RecA (NCBI ptt file) compare
BT3812 +1.4 5.7 phosphoribosylaminoimidazole carboxy formyl formyltransferase; inosine-monophosphate cyclohydrolase; bifunctional purine biosynthesis protein purH (NCBI ptt file) compare
BT0704 +1.4 2.3 phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) compare
BT1146 +1.4 3.8 putative metallo-beta-lactamase (NCBI ptt file) compare
BT3915 +1.4 1.7 hypothetical protein (NCBI ptt file) compare
BT1080 +1.4 2.7 hypothetical protein (NCBI ptt file) compare
BT4028 +1.3 1.9 hypothetical protein (NCBI ptt file) compare
BT3843 +1.3 5.2 ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) compare
BT0067 +1.3 2.1 hypothetical protein (NCBI ptt file) compare
BT1197 +1.3 3.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4531 +1.2 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT0327 +1.2 1.9 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) (NCBI ptt file) compare
BT3920 +1.2 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT2841 +1.2 3.9 pyruvate kinase (NCBI ptt file) compare
BT1947 +1.2 1.4 hypothetical protein (NCBI ptt file) compare
BT3197 +1.2 1.1 hypothetical protein (NCBI ptt file) compare
BT1704 +1.2 1.4 hypothetical protein (NCBI ptt file) compare
BT4414 +1.1 2.6 hypothetical protein (NCBI ptt file) compare
BT1055 +1.1 1.9 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT1808 +1.1 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT3832 +1.1 3.8 conserved hypothetical protein (NCBI ptt file) compare
BT4424 +1.1 2.9 sorbitol dehydrogenase (NCBI ptt file) compare
BT0188 +1.1 2.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT2010 +1.1 1.9 hypothetical protein (NCBI ptt file) compare
BT1951 +1.1 2.0 Fe3+ ABC transporter, permease protein (NCBI ptt file) compare
BT2741 +1.1 3.1 sigma-54 modulation protein (NCBI ptt file) compare
BT0549 +1.1 1.7 putative thioredoxin (NCBI ptt file) compare
BT4501 +1.0 2.9 ribosomal large subunit pseudouridine synthase A (NCBI ptt file) compare
BT2093 +1.0 1.5 hypothetical protein (NCBI ptt file) compare
BT2059 +1.0 1.0 TonB (NCBI ptt file) compare
BT1186 +1.0 1.9 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT4730 +1.0 2.5 hypothetical protein (NCBI ptt file) compare
BT0877 +1.0 1.4 ferredoxin domain containing protein (NCBI ptt file) compare
BT2283 +1.0 1.4 hypothetical protein (NCBI ptt file) compare
BT0151 +1.0 1.1 hypothetical protein (NCBI ptt file) compare
BT0418 +1.0 1.9 outer membrane porin F precursor (NCBI ptt file) compare
BT2597 +1.0 2.3 hypothetical protein (NCBI ptt file) compare
BT0838 +0.9 2.5 putative RNA methyltransferase (NCBI ptt file) compare
BT0134 +0.9 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0825 +0.9 1.9 altronate oxidoreductase (NCBI ptt file) compare
BT1482 +0.9 1.9 two-component system response regulator (NCBI ptt file) compare
BT2979 +0.9 3.3 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT3356 +0.9 2.4 6-phosphofructokinase (NCBI ptt file) compare
BT1633 +0.9 3.2 mannose-1-phosphate guanyltransferase (NCBI ptt file) compare
BT3937 +0.9 3.1 TPR-domain containing protein (NCBI ptt file) compare
BT2208 +0.9 1.9 hypothetical protein (NCBI ptt file) compare
BT1470 +0.9 1.3 putative two-component system sensor histidine kinase (NCBI ptt file) compare
BT1050 +0.8 2.4 hypothetical protein (NCBI ptt file) compare
BT0737 +0.8 3.2 formate--tetrahydrofolate ligase (NCBI ptt file) compare
BT1065 +0.8 1.7 hypothetical protein (NCBI ptt file) compare
BT2043 +0.8 1.6 hypothetical protein (NCBI ptt file) compare
BT3704 SusA +0.8 4.5 SusA: alpha-amylase / neopullulanase / cyclomaltodextrinase (EC 3.2.1.135; EC 3.2.1.54) (from data) compare
BT4700 +0.8 1.5 isochorismate synthase entC (NCBI ptt file) compare
BT2081 +0.8 1.6 hypothetical protein (NCBI ptt file) compare
BT0882 +0.8 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT2116 +0.8 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT4704 +0.8 2.8 O-succinylbenzoic acid--CoA ligase (NCBI ptt file) compare
BT0758 +0.8 1.5 acetyltransferase (NCBI ptt file) compare
BT2185 +0.8 1.8 hypothetical protein (NCBI ptt file) compare
BT1912 +0.8 1.5 hypothetical protein (NCBI ptt file) compare
BT1440 +0.8 4.4 TonB-dependent receptor for vancomycin (SusC-like) (from data) compare
BT4511 +0.8 1.8 hypothetical protein (NCBI ptt file) compare
BT1322 +0.8 2.1 putative ABC transporter permease protein (NCBI ptt file) compare
BT1969 +0.7 4.4 NADP-dependent malate dehydrogenase (NCBI ptt file) compare
BT3907 +0.7 3.2 conserved hypothetical protein (NCBI ptt file) compare
BT3881 +0.7 3.2 hypothetical protein (NCBI ptt file) compare
BT1899 +0.7 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT4737 +0.7 3.1 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT3643 +0.7 2.5 conserved hypothetical protein (NCBI ptt file) compare
BT0028 +0.7 1.7 alkaline phosphatase (NCBI ptt file) compare
BT0466 +0.7 2.7 dTDP-glucose 4,6-dehydratase (NCBI ptt file) compare
BT1457 +0.7 2.2 two-component system response regulator (NCBI ptt file) compare
BT0220 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
BT0815 +0.7 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT3839 +0.7 0.9 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0646 +0.7 2.3 hypothetical protein (NCBI ptt file) compare
BT4698 +0.7 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT0879 +0.7 2.1 ABC transporter, permease protein (NCBI ptt file) compare
BT1295 +0.7 1.0 V-type sodium ATP synthase subunit K (NCBI ptt file) compare
BT2335 +0.7 2.9 integrase protein (NCBI ptt file) compare
BT4429 +0.7 2.6 putative pteridine-dependent dioxygenase (NCBI ptt file) compare
p5482_06 +0.7 4.8 mobilization protein A (NCBI) compare
BT2799 +0.7 2.3 putative PfkB family carbohydrate kinase (NCBI ptt file) compare
BT3438 +0.7 1.5 hypothetical protein (NCBI ptt file) compare
BT3734 +0.7 2.6 oxidoreductase (NCBI ptt file) compare
BT4760 +0.7 1.0 hypothetical protein (NCBI ptt file) compare
BT4582 +0.7 3.3 amidophosphoribosyltransferase precursor (NCBI ptt file) compare
BT2240 +0.7 1.7 TPR-domain containing protein (NCBI ptt file) compare
BT1558 +0.7 1.9 hypothetical protein (NCBI ptt file) compare
BT0967 +0.7 0.6 hypothetical protein (NCBI ptt file) compare
BT1884 +0.6 1.3 cold shock protein, putative DNA-binding protein (NCBI ptt file) compare
BT4027 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
BT4738 +0.6 3.8 formate acetyltransferase (NCBI ptt file) compare
BT2651 +0.6 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT1109 +0.6 1.8 ferritin A (NCBI ptt file) compare
BT1657 +0.6 1.8 integrase (NCBI ptt file) compare
BT4709 +0.6 2.9 glycosyl hydrolase (NCBI ptt file) compare
BT4697 +0.6 4.6 transcriptional regulator (NCBI ptt file) compare
BT1903 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
BT4249 +0.6 0.6 hypothetical protein (NCBI ptt file) compare
BT4753 +0.6 0.7 hypothetical protein (NCBI ptt file) compare
BT1249 +0.6 2.5 putative multidrug resistance protein (NCBI ptt file) compare
BT0619 +0.6 0.6 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file) compare
BT1576 +0.6 0.7 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT0900 +0.6 1.4 putative tetratricopeptide repeat family protein (NCBI ptt file) compare
BT1933 +0.6 1.4 transposase (NCBI ptt file) compare
BT0313 +0.6 0.8 flavodoxin (NCBI ptt file) compare
BT4646 +0.6 0.6 conserved hypothetical protein (NCBI ptt file) compare
BT0923 +0.6 0.7 putative periplasmic protein (NCBI ptt file) compare
BT0563 +0.6 1.4 putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file) compare
BT2210 +0.6 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT0409 +0.6 1.2 putative short-chain dehydrogenase (NCBI ptt file) compare
BT1569 +0.6 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT4643 +0.6 2.2 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4346 +0.6 1.0 conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file) compare
BT4571 +0.6 0.7 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1494 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1948 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
BT0928 +0.6 1.4 two-component system response regulator (NCBI ptt file) compare
BT0335 +0.6 2.1 putative ATPase (NCBI ptt file) compare
BT3856 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
BT3251 +0.6 2.8 conserved hypothetical protein, putative integral membrane protein (NCBI ptt file) compare
BT4161 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
BT4773 +0.6 1.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4237 +0.6 2.0 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT1081 +0.6 1.0 recombination protein recR (NCBI ptt file) compare
BT1439 +0.6 4.1 Outer membrane binding protein for vancomycin (SusD-like) (from data) compare
BT0795 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT4212 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1693 +0.6 1.2 periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) compare
BT0633 +0.6 1.8 putative Na+/H+ exchange protein (NCBI ptt file) compare
BT2284 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
BT4666 +0.6 0.9 putative K+ uptake system protein (NCBI ptt file) compare
BT0194 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
BT0246 +0.6 2.1 putative integral membrane protein, with calcineurin-like phosphoesterase domain (NCBI ptt file) compare
BT4638 +0.6 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT3255 +0.6 2.1 putative N6-adenine-specific DNA methylase (NCBI ptt file) compare
BT3639 +0.5 2.1 ThiF family protein, putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis (NCBI ptt file) compare
BT4025 +0.5 0.7 hypothetical protein (NCBI ptt file) compare
p5482_07 +0.5 4.9 mobilization protein B (NCBI) compare
BT4317 +0.5 1.3 putative lipoprotein protein (NCBI ptt file) compare
BT4086 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT1298 +0.5 1.7 V-type ATP synthase subunit B (NCBI ptt file) compare
BT4036 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT1169 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT1326 +0.5 0.9 TPR-domain containing protein (NCBI ptt file) compare
BT1088 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT1461 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT1213 +0.5 1.3 periplasmic component of efflux system (NCBI ptt file) compare
BT3037 +0.5 1.5 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1544 +0.5 1.7 NADH pyrophosphatase, MutT family hydrolase (NCBI ptt file) compare
BT0063 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT3859 +0.5 3.1 hypothetical protein (NCBI ptt file) compare
BT0178 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT0693 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT0130 +0.5 1.0 putative oxidoreductase (NCBI ptt file) compare
BT0432 +0.5 1.9 putative endonuclease BB0411 (NCBI ptt file) compare
BT0689 +0.5 1.6 putative two-component system sensor histidine kinase (NCBI ptt file) compare
BT1393 +0.5 2.6 4-carboxymuconolactone decarboxylase (NCBI ptt file) compare
BT0068 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT0158 +0.5 2.0 Na(+)/H(+) antiporter (NCBI ptt file) compare
BT2062 +0.5 3.1 6-phosphofructokinase (NCBI ptt file) compare
BT1230 +0.5 0.7 hypothetical protein (NCBI ptt file) compare
BT2057 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT0850 +0.5 1.5 putative transcriptional regulator (NCBI ptt file) compare
BT1315 +0.5 1.6 ribonuclease BN (NCBI ptt file) compare
BT1920 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
BT3791 +0.5 2.6 conserved hypothetical protein (NCBI ptt file) compare
BT2689 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT4043 +0.5 2.7 dimethyladenosine transferase (NCBI ptt file) compare
BT0708 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT4381 +0.5 1.3 hypothetical protein (NCBI ptt file) compare
BT3972 +0.5 1.9 putative NTP pyrophosphohydrolase (NCBI ptt file) compare
BT3966 +0.5 1.8 two-component system response regulator (NCBI ptt file) compare
BT4706 +0.5 2.7 putative anti-sigma factor (NCBI ptt file) compare
BT2040 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT1145 +0.5 0.9 glucose-inhibited division protein (NCBI ptt file) compare
BT2688 +0.5 1.1 outer membrane efflux protein (NCBI ptt file) compare
BT1974 +0.5 2.4 metallopeptidase family M24, putative Xaa-Pro dipeptidase (NCBI ptt file) compare
BT0705 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT3772 +0.5 1.2 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) compare
BT0315 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT4061 +0.5 1.3 NADH dehydrogenase I, chain K (NCBI ptt file) compare
BT2131 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT0814 +0.5 0.8 conserved hypothetical protein, putative outer membrane protein (NCBI ptt file) compare
BT3457 +0.5 1.4 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1504 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
BT3316 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
BT1302 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
BT0160 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT0110 +0.5 2.3 putative regulatory protein (NCBI ptt file) compare
BT3641 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source amylopectin from maize in Bacteroides thetaiotaomicron VPI-5482

For carbon source amylopectin from maize across organisms