Experiment set31S11 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Pectic galactan from potato; filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
BT3757 -4.3 -5.1 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT2837 -4.0 -8.5 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT2074 -3.8 -6.3 ketol-acid reductoisomerase (NCBI ptt file) compare
BT3733 -3.7 -9.8 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT3761 -3.7 -2.5 N-succinylglutamate synthase (from data) compare
BT3933 -3.7 -4.3 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT2401 -3.5 -7.1 threonine synthase (NCBI ptt file) compare
BT3759 -3.4 -8.4 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT3981 -3.4 -2.3 hypothetical protein (NCBI ptt file) compare
BT2402 -3.4 -8.9 phosphoglycerate mutase (NCBI ptt file) compare
BT0202 -3.3 -3.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT3395 -3.3 -6.7 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT2836 -3.2 -10.7 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT0532 -3.2 -2.2 anthranilate synthase component I (NCBI ptt file) compare
BT2403 -3.2 -8.5 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT3918 -3.2 -4.3 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT1843 -3.2 -3.8 adenylosuccinate synthetase (NCBI ptt file) compare
BT1374 -3.2 -3.8 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT2076 -3.1 -5.2 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT2078 -3.1 -10.7 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT3718 -3.1 -6.2 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT1857 -3.1 -6.5 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT3758 -3.1 -2.1 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT1861 -3.1 -5.8 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT3760 -3.0 -3.6 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT1378 -3.0 -2.0 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT1607 -3.0 -3.5 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT1860 -2.9 -2.0 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT1746 -2.9 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT1153 -2.9 -4.4 phosphoserine aminotransferase (NCBI ptt file) compare
BT2077 -2.8 -5.1 acetolactate synthase large subunit (NCBI ptt file) compare
BT1858 -2.8 -5.0 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT0200 -2.8 -1.9 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT1379 -2.8 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT3717 -2.8 -3.8 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT3361 -2.8 -5.5 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT1375 -2.7 -6.9 aspartokinase (NCBI ptt file) compare
BT0738 -2.7 -3.1 serine hydroxymethyltransferase (NCBI ptt file) compare
BT3936 -2.7 -1.8 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT1859 -2.7 -2.6 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3320 -2.6 -6.2 dihydrodipicolinate reductase (NCBI ptt file) compare
BT1381 -2.6 -3.1 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT4672 -2.6 -3.0 hypothetical protein (NCBI ptt file) compare
BT3549 -2.6 -5.1 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT2415 -2.6 -8.9 aspartate aminotransferase (NCBI ptt file) compare
BT2003 -2.5 -1.7 putative membrane peptidase (NCBI ptt file) compare
BT0201 -2.5 -3.0 histidinol dehydrogenase (NCBI ptt file) compare
BT3164 -2.5 -8.0 quinolinate synthetase A (NCBI ptt file) compare
BT0528 -2.5 -1.7 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT0203 -2.5 -1.7 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT0530 -2.4 -2.8 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT3935 -2.4 -2.3 aminotransferase (NCBI ptt file) compare
BT0529 -2.4 -1.6 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT0875 -2.4 -4.9 beta-ureidopropionase (NCBI ptt file) compare
BT3193 -2.3 -11.5 putative coenzyme A transferase (NCBI ptt file) compare
BT3184 -2.3 -12.2 L-aspartate oxidase (NCBI ptt file) compare
BT3394 -2.3 -9.8 putative arginine decarboxylase (NCBI ptt file) compare
BT1377 -2.2 -2.2 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT2129 -2.2 -5.2 aspartate--ammonia ligase (NCBI ptt file) compare
BT0531 -2.2 -2.1 anthranilate synthase component II (NCBI ptt file) compare
BT1152 -2.2 -2.1 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT2080 -2.2 -3.8 L-cysteine desulfidase cdsB (from data) compare
BT1380 -2.1 -1.4 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT0892 -2.1 -1.4 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT3719 -2.1 -2.8 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT1970 -2.1 -7.7 glutamate dehydrogenase (NCBI ptt file) compare
BT0891 -2.1 -1.4 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT4211 -2.0 -1.9 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT0533 -2.0 -1.4 tryptophan synthase beta chain (NCBI ptt file) compare
BT4563 -2.0 -2.6 hypothetical protein (NCBI ptt file) compare
BT0527 -2.0 -1.4 tryptophan synthase alpha chain (NCBI ptt file) compare
BT3253 -2.0 -1.3 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT4102 -2.0 -1.8 putative Sec-independent protein translocase (NCBI ptt file) compare
BT4644 -1.9 -2.8 putative anti-sigma factor (NCBI ptt file) compare
BT4503 -1.9 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT1476 -1.9 -2.8 aspartate aminotransferase (NCBI ptt file) compare
BT0825 -1.8 -1.7 altronate oxidoreductase (NCBI ptt file) compare
p5482_02 -1.7 -5.7 hypothetical protein (NCBI) compare
BT4191 -1.7 -6.6 hypothetical protein (NCBI ptt file) compare
BT1733 -1.7 -2.3 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT1589 -1.7 -2.6 hypothetical protein (NCBI ptt file) compare
BT0700 -1.6 -3.4 GTP pyrophosphokinase (NCBI ptt file) compare
BT4667 -1.6 -6.8 beta-galactosidase (NCBI ptt file) compare
BT2932 -1.6 -2.2 transcriptional regulator (NCBI ptt file) compare
BT1442 -1.6 -3.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT1844 -1.5 -3.2 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT3701 SusD -1.5 -8.9 SusD, outer membrane protein (NCBI ptt file) compare
BT1221 -1.4 -1.7 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT4699 -1.4 -2.1 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT4669 -1.4 -4.0 hypothetical protein (NCBI ptt file) compare
BT1608 -1.4 -4.7 capsule biosynthesis protein capA (NCBI ptt file) compare
BT1058 -1.4 -8.2 two-component system sensor histidine kinase (NCBI ptt file) compare
BT3554 -1.4 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT4328 -1.4 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT1443 -1.4 -4.2 8-amino-7-oxononanoate synthase (NCBI ptt file) compare
BT3702 SusC -1.4 -8.6 SusC, outer membrane protein involved in starch binding (NCBI ptt file) compare
BT0151 -1.4 -0.9 hypothetical protein (NCBI ptt file) compare
BT4673 -1.3 -6.7 two-component system sensor histidine kinase (NCBI ptt file) compare
BT0739 -1.3 -1.8 hypothetical protein (NCBI ptt file) compare
BT1641 -1.3 -1.4 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT0352 -1.3 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT0199 -1.3 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT4097 -1.3 -0.9 Trk system K+ uptake protein trkH (NCBI ptt file) compare
BT0370 -1.3 -2.9 galactokinase (NCBI ptt file) compare
BT1747 -1.3 -2.2 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT4774 -1.3 -1.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4138 -1.3 -4.6 putative aminotransferase (NCBI ptt file) compare
BT2546 -1.3 -4.2 transcriptional regulator (NCBI ptt file) compare
BT0353 -1.3 -3.4 putative sugar epimerase/aldolase (NCBI ptt file) compare
BT0216 -1.3 -2.3 putative rubrerythrin (NCBI ptt file) compare
BT0261 -1.3 -2.1 hypothetical protein (NCBI ptt file) compare
BT1336 -1.3 -2.6 putative translation initiation inhibitor (NCBI ptt file) compare
BT3194 -1.2 -3.6 hypothetical protein (NCBI ptt file) compare
BT4018 -1.2 -1.7 hypothetical protein (NCBI ptt file) compare
BT1220 -1.2 -1.1 6-phosphogluconolactonase (NCBI ptt file) compare
BT0548 -1.2 -2.1 diaminopimelate epimerase (NCBI ptt file) compare
BT0674 -1.2 -2.1 carboxynorspermidine decarboxylase (NCBI ptt file) compare
BT4671 -1.2 -6.9 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT1735 -1.2 -2.0 chromate transport protein (NCBI ptt file) compare
BT0758 -1.2 -1.4 acetyltransferase (NCBI ptt file) compare
BT4258 -1.2 -4.6 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
BT1575 -1.2 -2.0 putative dehydrogenase (NCBI ptt file) compare
BT0887 -1.1 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT1444 -1.1 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT0647 -1.1 -1.4 thiamine phosphate pyrophosphorylase (NCBI ptt file) compare
BT0477 -1.1 -1.2 putative phosphatase (NCBI ptt file) compare
BT_2008 -1.1 -1.2 hypothetical protein (RefSeq) compare
BT1456 -1.1 -1.8 thioredoxin (TRX) (NCBI ptt file) compare
BT3900 -1.1 -2.9 hypothetical protein (NCBI ptt file) compare
BT0486 -1.1 -4.6 altronate hydrolase (NCBI ptt file) compare
BT0035 -1.1 -2.2 hypothetical protein (NCBI ptt file) compare
BT0971 -1.1 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT3766 -1.1 -2.9 rhamnulose 1-phosphate aldolase RhaD (EC 4.1.2.19) (from data) compare
BT1145 -1.1 -1.4 glucose-inhibited division protein (NCBI ptt file) compare
BT4733 -1.1 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT3268 -1.1 -1.3 glucose-inhibited division protein A (NCBI ptt file) compare
BT0602 -1.1 -2.4 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI ptt file) compare
BT0697 -1.0 -1.1 putative phosphatase/phosphohexomutase (NCBI ptt file) compare
BT3705 SusR -1.0 -6.8 regulatory protein SusR (NCBI ptt file) compare
BT4255 -1.0 -2.1 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) compare
BT1979 -1.0 -2.3 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT0827 -1.0 -1.9 hypothetical protein (NCBI ptt file) compare
BT1446 -1.0 -3.5 dethiobiotin synthetase (NCBI ptt file) compare
BT4778 -1.0 -2.2 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT0503 -1.0 -1.3 hypothetical protein (NCBI ptt file) compare
BT3980 -1.0 -1.1 hypothetical protein (NCBI ptt file) compare
BT0490 -1.0 -1.4 hypothetical protein (NCBI ptt file) compare
BT0651 -1.0 -1.5 thiamine biosynthesis protein ThiG (NCBI ptt file) compare
BT1411 -1.0 -1.5 methylated-DNA--protein-cysteine methyltransferase (NCBI ptt file) compare
BT4670 -1.0 -3.4 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT0927 -1.0 -0.8 two-component system sensor histidine kinase (NCBI ptt file) compare
BT3072 -1.0 -3.3 collagenase precursor (NCBI ptt file) compare
BT1445 -1.0 -2.1 putative biotin synthesis protein bioC (NCBI ptt file) compare
BT1983 -1.0 -5.0 hemolysin III (NCBI ptt file) compare
BT3783 -1.0 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT0115 -1.0 -1.9 arsenate reductase (NCBI ptt file) compare
BT0400 -0.9 -1.5 putative tyrosine-protein kinase in capsular polysaccharide biosynthesis region (NCBI ptt file) compare
BT1761 -0.9 -2.9 hypothetical protein (NCBI ptt file) compare
BT3921 -0.9 -2.7 hypothetical protein (NCBI ptt file) compare
BT1972 -0.9 -5.7 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT0876 -0.9 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT1358 -0.9 -1.9 putative transcriptional regulator (NCBI ptt file) compare
BT0731 -0.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT1536 -0.9 -2.4 ABC transporter permease (NCBI ptt file) compare
BT0372 -0.9 -2.5 aldose 1-epimerase precursor (NCBI ptt file) compare
BT3730 -0.9 -0.9 putative regulatory protein (NCBI ptt file) compare
BT3669 -0.9 -3.2 conserved hypothetical protein (NCBI ptt file) compare
BT4322 -0.9 -1.3 conserved hypothetical protein, with a diacylglycerol kinase catalytic domain (NCBI ptt file) compare
BT2127 -0.9 -2.7 putative beta-phosphoglucomutase (NCBI ptt file) compare
BT3756 -0.9 -2.6 transcriptional regulator (NCBI ptt file) compare
BT0652 -0.9 -1.2 putative thiamine-phosphate pyrophosphorylase (NCBI ptt file) compare
BT3911 -0.9 -1.6 malate dehydrogenase (NCBI ptt file) compare
BT3168 -0.9 -4.1 putative Fe-S oxidoreductase (NCBI ptt file) compare
BT1419 -0.9 -1.6 hypothetical protein (NCBI ptt file) compare
BT1270 -0.9 -2.9 putative Na+/H+ antiporter (NCBI ptt file) compare
BT0350 -0.9 -2.6 ribulokinase (EC 2.7.1.16) (from data) compare
BT0298 -0.9 -1.3 cation efflux system protein (outer membrane protein) (NCBI ptt file) compare
BT0475 -0.8 -1.2 putative phosphoheptose isomerase (NCBI ptt file) compare
BT2977 -0.8 -4.9 peptidylprolyl isomerase (NCBI ptt file) compare
BT1557 -0.8 -1.3 hypothetical protein (NCBI ptt file) compare
BT2241 -0.8 -5.0 DNA-damage-inducible protein F (NCBI ptt file) compare
BT0519 -0.8 -1.4 hypothetical protein (NCBI ptt file) compare
BT2845 -0.8 -3.2 conserved hypothetical protein (NCBI ptt file) compare
BT2749 -0.8 -5.4 putative membrane-associated HD superfamily hydrolase (NCBI ptt file) compare
BT0736 -0.8 -1.6 putative transport protein (NCBI ptt file) compare
BT4341 -0.8 -3.2 hypothetical protein (NCBI ptt file) compare
BT1011 -0.8 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT2031 -0.8 -1.9 hypothetical protein (NCBI ptt file) compare
BT1347 -0.8 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT1321 -0.8 -2.1 putative phosphate transport ATP-binding protein (NCBI ptt file) compare
BT0170 -0.8 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0771 -0.8 -2.0 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT4310 -0.8 -5.0 NADPH-dependent glutamate synthase small chain (NCBI ptt file) compare
BT0769 -0.8 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1363 -0.8 -0.7 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT0292 -0.8 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0650 -0.8 -2.1 thiamine biosynthesis protein ThiC (NCBI ptt file) compare
BT3694 -0.8 -1.0 glycosyltransferase (NCBI ptt file) compare
BT1296 -0.8 -3.4 V-type ATP synthase subunit I (NCBI ptt file) compare
BT0043 -0.8 -1.2 putative glycosyltransferase (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in carbon source experiments

For carbon source Pectic galactan from potato across organisms