Experiment set31S11 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Pectic galactan from potato; filtered 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
BT3642 +4.1 24.3 Na+-dependent transporter (NCBI ptt file) compare
BT1112 +2.0 2.3 transposase (NCBI ptt file) compare
BT1127 +1.9 2.5 mobilization protein BmgB (NCBI ptt file) compare
BT0231 +1.8 2.4 excisionase (NCBI ptt file) compare
BT4453 +1.7 2.4 6-pyruvoyl-tetrahydropterin synthase (NCBI ptt file) compare
BT1466 +1.7 3.6 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT2027 +1.5 2.8 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT4753 +1.5 2.2 hypothetical protein (NCBI ptt file) compare
BT0878 +1.5 1.8 ABC transporter, ATP-binding protein (NCBI ptt file) compare
BT0972 +1.4 2.2 putative oxidoreductase (NCBI ptt file) compare
BT1947 +1.4 1.7 hypothetical protein (NCBI ptt file) compare
BT4206 +1.4 1.8 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NCBI ptt file) compare
BT4607 +1.4 3.0 conserved hypothetical protein (NCBI ptt file) compare
BT0937 +1.4 2.5 hypothetical protein (NCBI ptt file) compare
BT0782 +1.4 2.1 hypothetical protein (NCBI ptt file) compare
BT0188 +1.3 2.7 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT0405 +1.2 1.9 hypothetical protein (NCBI ptt file) compare
BT3737 +1.2 1.7 hypothetical protein (NCBI ptt file) compare
BT4346 +1.2 2.4 conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file) compare
BT2042 +1.1 1.9 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT2122 +1.1 1.9 lysyl-tRNA synthetase (NCBI ptt file) compare
BT0238 +1.1 2.4 transcriptional regulator (NCBI ptt file) compare
BT0088 +1.1 3.6 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4098 +1.1 1.3 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT0134 +1.0 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT2284 +1.0 2.3 hypothetical protein (NCBI ptt file) compare
BT0631 +1.0 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT1482 +1.0 2.3 two-component system response regulator (NCBI ptt file) compare
BT2115 +1.0 2.9 hypothetical protein (NCBI ptt file) compare
BT4646 +1.0 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1109 +1.0 2.8 ferritin A (NCBI ptt file) compare
BT0044 +1.0 2.3 putative glycosyltransferase (NCBI ptt file) compare
BT1680 +1.0 2.2 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT1262 +1.0 1.2 putative transcriptional regulator (NCBI ptt file) compare
BT1899 +1.0 3.3 conserved hypothetical protein (NCBI ptt file) compare
BT2040 +1.0 4.3 hypothetical protein (NCBI ptt file) compare
BT3843 +1.0 3.6 ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) compare
BT1250 +0.9 3.4 conserved hypothetical protein, putative outer membrane efflux protein (NCBI ptt file) compare
BT1504 +0.9 2.9 hypothetical protein (NCBI ptt file) compare
BT4028 +0.9 1.3 hypothetical protein (NCBI ptt file) compare
BT4571 +0.9 1.2 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1080 +0.9 1.7 hypothetical protein (NCBI ptt file) compare
BT0178 +0.9 1.8 hypothetical protein (NCBI ptt file) compare
BT1558 +0.9 2.8 hypothetical protein (NCBI ptt file) compare
BT0185 +0.9 0.8 conserved hypothetical protein (NCBI ptt file) compare
BT0067 +0.9 1.3 hypothetical protein (NCBI ptt file) compare
BT1539 +0.8 2.1 cytidine deaminase (NCBI ptt file) compare
BT0087 +0.8 1.8 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4647 +0.8 3.0 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT0017 +0.8 2.3 hypothetical protein (NCBI ptt file) compare
BT1369 +0.8 1.2 hypothetical protein (NCBI ptt file) compare
BT0780 +0.8 1.9 acetyltransferase (NCBI ptt file) compare
BT0777 +0.8 1.6 hypothetical protein (NCBI ptt file) compare
BT2208 +0.8 2.1 hypothetical protein (NCBI ptt file) compare
BT1197 +0.8 1.8 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT2841 +0.8 1.7 pyruvate kinase (NCBI ptt file) compare
BT0912 +0.8 1.4 DNA-binding protein HU (NCBI ptt file) compare
BT1698 +0.8 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0382 +0.8 2.9 capsular polysaccharide biosynthesis protein Cps4K (NCBI ptt file) compare
BT4704 +0.8 3.0 O-succinylbenzoic acid--CoA ligase (NCBI ptt file) compare
BT0885 +0.8 1.1 putative cation efflux pump (NCBI ptt file) compare
BT0723 +0.8 1.2 hypothetical protein (NCBI ptt file) compare
BT0378 +0.8 1.1 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) compare
BT1535 +0.8 1.3 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0635 +0.8 1.4 putative transcriptional regulator (NCBI ptt file) compare
BT3368 +0.7 1.3 putative glycosyltransferase (NCBI ptt file) compare
BT0851 +0.7 1.7 hypothetical protein (NCBI ptt file) compare
BT2057 +0.7 1.9 hypothetical protein (NCBI ptt file) compare
BT2471 +0.7 1.8 hypothetical protein (NCBI ptt file) compare
BT3812 +0.7 2.6 phosphoribosylaminoimidazole carboxy formyl formyltransferase; inosine-monophosphate cyclohydrolase; bifunctional purine biosynthesis protein purH (NCBI ptt file) compare
BT0418 +0.7 1.3 outer membrane porin F precursor (NCBI ptt file) compare
BT2646 +0.7 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT4237 +0.7 2.5 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT1322 +0.7 2.0 putative ABC transporter permease protein (NCBI ptt file) compare
BT0783 +0.7 1.0 hypothetical protein (NCBI ptt file) compare
BT4763 +0.7 1.3 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1194 +0.7 2.3 outer membrane protein, OmpA family (NCBI ptt file) compare
BT0159 +0.7 2.9 conserved hypothetical protein (NCBI ptt file) compare
BT1260 +0.7 2.6 putative peptidase (NCBI ptt file) compare
BT0756 +0.7 0.9 iduronate 2-sulfatase precursor (NCBI ptt file) compare
BT3323 +0.7 2.5 hypothetical protein (NCBI ptt file) compare
BT1140 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
BT4730 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
BT0751 +0.7 1.6 putative efflux pump component protein (NCBI ptt file) compare
BT0399 +0.7 2.4 tyrosine-protein kinase ptk involved in exopolysaccharide biosynthesis (NCBI ptt file) compare
BT0857 +0.7 2.0 outer membrane protein TolC, putative (NCBI ptt file) compare
BT4677 +0.7 1.9 hypothetical protein (NCBI ptt file) compare
BT4384 +0.7 2.7 hypothetical protein (NCBI ptt file) compare
BT0157 +0.7 1.7 hypothetical protein (NCBI ptt file) compare
BT4531 +0.6 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT4610 +0.6 1.0 RecA (NCBI ptt file) compare
BT4455 +0.6 1.5 oxidoreductase, putative glycolate oxidase (NCBI ptt file) compare
BT1855 +0.6 1.3 putative methyl transferase (NCBI ptt file) compare
BT2072 +0.6 4.1 aconitate hydratase (NCBI ptt file) compare
BT4422 +0.6 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT3117 +0.6 2.0 putative oxidoreductase (NCBI ptt file) compare
BT1657 +0.6 1.8 integrase (NCBI ptt file) compare
BT1951 +0.6 1.1 Fe3+ ABC transporter, permease protein (NCBI ptt file) compare
BT1259 +0.6 1.9 choloylglycine hydrolase (NCBI ptt file) compare
BT4649 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
BT2537 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
BT1055 +0.6 1.0 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT4450 +0.6 3.0 conserved hypothetical protein (NCBI ptt file) compare
BT2781 +0.6 2.1 putative mannose-1-phosphate guanylyltransferase (NCBI ptt file) compare
BT0021 +0.6 1.5 hypothetical protein (NCBI ptt file) compare
BT1440 +0.6 3.6 TonB-dependent receptor for vancomycin (SusC-like) (from data) compare
BT2520 +0.6 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1266 +0.6 2.8 putative two-component system sensor protein, no kinase domain (NCBI ptt file) compare
BT4380 +0.6 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1273 +0.6 2.6 L-fucose isomerase (NCBI ptt file) compare
BT4382 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
BT1518 +0.6 2.4 hypothetical protein (NCBI ptt file) compare
BT0581 +0.6 1.0 putative acetyltransferase, GNAT family (NCBI ptt file) compare
BT0704 +0.6 0.9 phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) compare
BT2081 +0.6 2.5 hypothetical protein (NCBI ptt file) compare
BT2678 +0.6 2.6 hypothetical protein (NCBI ptt file) compare
BT0273 +0.6 2.2 Outer membrane binding protein for (+)-arabinogalactan (SusD-like) (from data) compare
BT1066 +0.6 2.3 hypothetical protein (NCBI ptt file) compare
BT0321 +0.6 1.1 cytidine/deoxycytidylate deaminase (NCBI ptt file) compare
p5482_06 +0.6 3.5 mobilization protein A (NCBI) compare
BT0646 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
BT0786 +0.6 1.7 putative integral membrane protein (NCBI ptt file) compare
BT0850 +0.6 1.8 putative transcriptional regulator (NCBI ptt file) compare
BT0992 +0.6 2.1 beta-galactosidase (NCBI ptt file) compare
BT2550 +0.6 3.0 beta-glucanase precursor (NCBI ptt file) compare
BT4676 +0.6 1.7 putative periplasmic protein (NCBI ptt file) compare
BT2979 +0.6 2.5 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT2099 +0.6 2.2 Fe3+ ABC transporter, permease (NCBI ptt file) compare
BT0492 +0.6 2.1 integral membrane protein (NCBI ptt file) compare
BT1395 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT3587 +0.6 2.5 glucosamine-6-phosphate isomerase (NCBI ptt file) compare
BT1780 +0.6 3.5 periplasmic beta-glucosidase precursor (NCBI ptt file) compare
BT4477 +0.5 2.1 putative ATP-dependent DNA helicase (NCBI ptt file) compare
BT1117 +0.5 0.9 conserved hypothetical protein, with a cAMP-binding domain (NCBI ptt file) compare
BT0232 +0.5 1.5 putative protein involved in transposition (NCBI ptt file) compare
BT0033 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
BT0671 +0.5 1.1 outer membrane protein TolC, putative (NCBI ptt file) compare
BT1103 +0.5 1.0 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT0816 +0.5 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT4693 +0.5 1.9 cation efflux system protein (NCBI ptt file) compare
BT4695 +0.5 2.3 outer membrane efflux protein precursor (NCBI ptt file) compare
BT0797 +0.5 1.4 transcriptional regulator, ArsR family (NCBI ptt file) compare
BT0501 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT2006 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT2612 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
BT0463 +0.5 1.4 glucose-1-phosphate thymidylyltransferase (NCBI ptt file) compare
BT4582 +0.5 2.8 amidophosphoribosyltransferase precursor (NCBI ptt file) compare
BT0404 +0.5 2.2 hypothetical protein (NCBI ptt file) compare
BT0509 +0.5 2.8 ABC transporter ATP-binding/transmembrane protein (NCBI ptt file) compare
BT3704 SusA +0.5 3.0 SusA: alpha-amylase / neopullulanase / cyclomaltodextrinase (EC 3.2.1.135; EC 3.2.1.54) (from data) compare
BT4641 +0.5 1.6 putative acetyltransferase (NCBI ptt file) compare
BT0877 +0.5 0.7 ferredoxin domain containing protein (NCBI ptt file) compare
BT1068 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT4261 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
BT1439 +0.5 4.0 Outer membrane binding protein for vancomycin (SusD-like) (from data) compare
BT_0687 +0.5 1.8 hydroxylamine reductase (RefSeq) compare
BT3315 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
BT1189 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT1198 +0.5 1.6 LemA protein (NCBI ptt file) compare
BT2283 +0.5 0.7 hypothetical protein (NCBI ptt file) compare
BT0106 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT4002 +0.5 0.7 ATPase, ParA family (NCBI ptt file) compare
BT0737 +0.5 2.0 formate--tetrahydrofolate ligase (NCBI ptt file) compare
BT3643 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT2321 +0.5 1.3 putative integrase (NCBI ptt file) compare
BT4305 +0.5 3.9 putative alpha-amylase (NCBI ptt file) compare
BT1580 +0.5 1.1 lactoylglutathione lyase (NCBI ptt file) compare
BT2043 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT3832 +0.5 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT0991 +0.5 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT3438 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
BT1503 +0.5 2.3 integrase (NCBI ptt file) compare
BT0055 +0.5 1.6 putative glycosyltransferase (NCBI ptt file) compare
BT0676 +0.5 1.8 N-acetylglucosamine-6-phosphate deacetylase (NCBI ptt file) compare
BT1048 +0.5 1.7 putative secreted endoglycosidase (NCBI ptt file) compare
BT3922 +0.5 2.4 putative ThiJ family intracellular protease/amidase (NCBI ptt file) compare
BT4428 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT1203 +0.5 1.0 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT2490 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT0815 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT0110 +0.5 2.4 putative regulatory protein (NCBI ptt file) compare
BT1633 +0.5 1.7 mannose-1-phosphate guanyltransferase (NCBI ptt file) compare
BT2996 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT4573 +0.5 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0940 +0.5 1.3 hypothetical protein (NCBI ptt file) compare
BT2062 +0.5 2.3 6-phosphofructokinase (NCBI ptt file) compare
BT3197 +0.5 0.4 hypothetical protein (NCBI ptt file) compare
BT3262 +0.5 2.4 hypothetical protein (NCBI ptt file) compare
BT0313 +0.5 0.7 flavodoxin (NCBI ptt file) compare
BT4066 +0.5 3.0 NADH dehydrogenase I, chain B (NCBI ptt file) compare
BT1569 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT2018 +0.5 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT0659 +0.5 2.2 hypothetical protein (NCBI ptt file) compare
BT2589 +0.5 2.0 type I restriction enzyme, M subunit (NCBI ptt file) compare
BT0693 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT1435 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT4086 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
BT4020 +0.4 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT3641 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1494 +0.4 1.0 conserved hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in carbon source experiments

For carbon source Pectic galactan from potato across organisms