Experiment set2S97 for Rhodanobacter denitrificans MT42

Compare to:

no stress control

200 most detrimental genes:

  gene name fitness t score description  
LRK55_RS19050 +1.7 3.1 hypothetical protein compare
LRK55_RS01770 +1.3 4.0 hypothetical protein compare
LRK55_RS03730 +1.3 2.8 A24 family peptidase compare
LRK55_RS10215 +1.1 4.3 YifB family Mg chelatase-like AAA ATPase compare
LRK55_RS00910 +1.0 7.2 PilZ domain-containing protein compare
LRK55_RS16950 +1.0 1.7 GDCCVxC domain-containing (seleno)protein compare
LRK55_RS14310 +1.0 1.5 alpha/beta hydrolase compare
LRK55_RS18765 +0.9 1.5 arsenate reductase ArsC compare
LRK55_RS13875 +0.9 2.5 OsmC family protein compare
LRK55_RS00985 +0.9 1.9 hypothetical protein compare
LRK55_RS19590 +0.9 2.7 hypothetical protein compare
LRK55_RS07905 +0.9 2.2 nuclear transport factor 2 family protein compare
LRK55_RS01410 +0.9 2.6 cation diffusion facilitator family transporter compare
LRK55_RS13870 +0.9 1.3 ATP-binding protein compare
LRK55_RS04800 +0.9 4.9 sigma-54 dependent transcriptional regulator compare
LRK55_RS13350 +0.9 2.0 chemotaxis protein CheW compare
LRK55_RS19595 +0.9 2.3 hypothetical protein compare
LRK55_RS07315 +0.8 3.0 K+/H+ antiporter subunit F compare
LRK55_RS05945 +0.8 2.2 hypothetical protein compare
LRK55_RS11565 +0.8 5.6 PilN domain-containing protein compare
LRK55_RS11425 +0.8 1.6 cytochrome bd-I oxidase subunit CydX compare
LRK55_RS11315 +0.8 4.7 cAMP-activated global transcriptional regulator CRP compare
LRK55_RS15275 +0.8 1.5 YciI family protein compare
LRK55_RS13290 +0.8 1.9 flagellar biosynthesis protein FliQ compare
LRK55_RS11580 +0.7 4.8 type IV pilus secretin PilQ compare
LRK55_RS06115 +0.7 1.0 benenodin family lasso peptide compare
LRK55_RS07740 +0.7 1.2 TraR/DksA family transcriptional regulator compare
LRK55_RS16850 +0.7 1.3 DUF1456 family protein compare
LRK55_RS09025 +0.7 1.3 sigma-70 family RNA polymerase sigma factor compare
LRK55_RS06660 +0.7 2.2 hypothetical protein compare
LRK55_RS09960 +0.7 1.7 dihydroxy-acid dehydratase compare
LRK55_RS06760 +0.7 5.3 ABC transporter permease compare
LRK55_RS07710 +0.7 1.5 DUF488 domain-containing protein compare
LRK55_RS03720 +0.7 3.9 type II secretion system F family protein compare
LRK55_RS12155 +0.7 2.1 hypothetical protein compare
LRK55_RS11575 +0.7 5.1 pilus assembly protein PilP compare
LRK55_RS03945 +0.7 4.9 Hpt domain-containing protein compare
LRK55_RS18785 +0.7 1.0 GDCCVxC domain-containing (seleno)protein compare
LRK55_RS03635 +0.7 5.1 pilin compare
LRK55_RS04615 +0.7 1.2 pilus assembly PilX N-terminal domain-containing protein compare
LRK55_RS06755 +0.7 3.7 ABC transporter ATP-binding protein compare
LRK55_RS03740 +0.7 1.7 NUDIX domain-containing protein compare
LRK55_RS04770 +0.7 5.2 HAMP domain-containing sensor histidine kinase compare
LRK55_RS00340 +0.7 5.4 class I SAM-dependent DNA methyltransferase compare
LRK55_RS16300 +0.7 5.5 EAL domain-containing protein compare
LRK55_RS16890 +0.7 1.2 copper resistance protein B compare
LRK55_RS04820 +0.7 2.4 response regulator compare
LRK55_RS15625 +0.7 2.5 Ig-like domain-containing protein compare
LRK55_RS03715 +0.7 5.0 type IV-A pilus assembly ATPase PilB compare
LRK55_RS08935 +0.6 2.8 redoxin domain-containing protein compare
LRK55_RS05700 +0.6 1.3 hypothetical protein compare
LRK55_RS00585 +0.6 1.0 SMC-Scp complex subunit ScpB compare
LRK55_RS09460 +0.6 1.7 hypothetical protein compare
LRK55_RS00335 +0.6 4.3 restriction endonuclease subunit S compare
LRK55_RS05260 +0.6 4.2 serine hydrolase domain-containing protein compare
LRK55_RS11570 +0.6 4.7 type 4a pilus biogenesis protein PilO compare
LRK55_RS16255 +0.6 1.8 aldehyde reductase compare
LRK55_RS08555 +0.6 1.9 GNAT family N-acetyltransferase compare
LRK55_RS01745 +0.6 2.7 hypothetical protein compare
LRK55_RS01970 +0.6 3.1 GspH/FimT family pseudopilin compare
LRK55_RS02450 +0.6 1.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK55_RS11560 +0.6 4.3 pilus assembly protein PilM compare
LRK55_RS02650 +0.6 3.6 C40 family peptidase compare
LRK55_RS11850 +0.6 2.1 GIY-YIG nuclease family protein compare
LRK55_RS15470 +0.6 1.4 ATP-binding cassette domain-containing protein compare
LRK55_RS13255 +0.6 1.2 flagellar export protein FliJ compare
LRK55_RS00755 +0.6 3.6 DnaJ C-terminal domain-containing protein compare
LRK55_RS03160 +0.6 1.8 ATP-binding protein compare
LRK55_RS07235 +0.6 1.0 hypothetical protein compare
LRK55_RS02065 +0.6 1.8 YdeI/OmpD-associated family protein compare
LRK55_RS07770 +0.6 3.0 aldehyde dehydrogenase family protein compare
LRK55_RS16710 +0.6 2.7 YdbL family protein compare
LRK55_RS05960 +0.6 2.0 YciI family protein compare
LRK55_RS01940 +0.6 4.4 type IV pilin protein compare
LRK55_RS08890 +0.6 0.8 Rrf2 family transcriptional regulator compare
LRK55_RS10855 +0.6 2.4 SGNH/GDSL hydrolase family protein compare
LRK55_RS01735 +0.6 2.6 efflux RND transporter periplasmic adaptor subunit compare
LRK55_RS13150 +0.6 2.6 flagellar basal body rod protein FlgC compare
LRK55_RS02395 +0.6 2.0 DEAD/DEAH box helicase compare
LRK55_RS14960 +0.5 1.9 J domain-containing protein compare
LRK55_RS01965 +0.5 2.8 type IV pilus modification protein PilV compare
LRK55_RS07545 +0.5 1.9 MFS transporter compare
LRK55_RS00650 +0.5 0.7 hypothetical protein compare
LRK55_RS08070 +0.5 2.6 Lrp/AsnC family transcriptional regulator compare
LRK55_RS16485 +0.5 3.0 transglycosylase SLT domain-containing protein compare
LRK55_RS01755 +0.5 1.5 c-type cytochrome compare
LRK55_RS14915 +0.5 1.6 AraC family transcriptional regulator compare
LRK55_RS13950 +0.5 0.7 GspH/FimT family pseudopilin compare
LRK55_RS14070 +0.5 1.3 NAD(P)-binding domain-containing protein compare
LRK55_RS13225 +0.5 3.0 sigma-54-dependent Fis family transcriptional regulator compare
LRK55_RS11310 +0.5 1.3 sulfite exporter TauE/SafE family protein compare
LRK55_RS09850 +0.5 2.1 pyridoxal-phosphate dependent enzyme compare
LRK55_RS12370 +0.5 2.6 endonuclease domain-containing protein compare
LRK55_RS06185 +0.5 1.6 HAD family hydrolase compare
LRK55_RS15345 +0.5 1.8 hypothetical protein compare
LRK55_RS07715 +0.5 2.8 decarboxylating 6-phosphogluconate dehydrogenase compare
LRK55_RS15770 +0.5 2.1 ribonuclease D compare
LRK55_RS03755 +0.5 1.4 TIGR00266 family protein compare
LRK55_RS09975 +0.5 1.6 3-isopropylmalate dehydratase large subunit compare
LRK55_RS07670 +0.5 2.5 histidine kinase compare
LRK55_RS12575 +0.5 3.1 RNA polymerase factor sigma-54 compare
LRK55_RS01915 +0.5 3.7 RNA polymerase sigma factor compare
LRK55_RS04025 +0.5 2.7 type IV pilus twitching motility protein PilT compare
LRK55_RS04565 +0.5 2.5 hypothetical protein compare
LRK55_RS14040 +0.5 2.3 penicillin acylase family protein compare
LRK55_RS17475 +0.5 3.1 leucyl/phenylalanyl-tRNA--protein transferase compare
LRK55_RS14030 +0.5 0.8 FAD:protein FMN transferase compare
LRK55_RS14455 +0.5 1.9 glutathione peroxidase compare
LRK55_RS09145 +0.5 0.8 TIGR04283 family arsenosugar biosynthesis glycosyltransferase compare
LRK55_RS09920 +0.5 1.0 PspC domain-containing protein compare
LRK55_RS15735 +0.5 2.6 class I SAM-dependent methyltransferase compare
LRK55_RS15365 +0.5 2.4 glutathione S-transferase family protein compare
LRK55_RS05065 +0.5 3.9 APC family permease compare
LRK55_RS02245 +0.5 2.9 GGDEF domain-containing phosphodiesterase compare
LRK55_RS17240 +0.5 0.8 (2Fe-2S)-binding protein compare
LRK55_RS13345 +0.5 1.9 flagellar motor protein MotD compare
LRK55_RS01960 +0.5 3.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
LRK55_RS11030 +0.5 2.1 4-hydroxy-tetrahydrodipicolinate reductase compare
LRK55_RS07775 +0.5 1.1 NAD(P)-dependent oxidoreductase compare
LRK55_RS05560 +0.5 0.9 thiol peroxidase compare
LRK55_RS16220 +0.5 1.1 metalloregulator ArsR/SmtB family transcription factor compare
LRK55_RS05930 +0.5 1.6 CPXCG motif-containing cysteine-rich protein compare
LRK55_RS02460 +0.4 1.6 nitronate monooxygenase compare
LRK55_RS17820 +0.4 3.1 heat-inducible transcriptional repressor HrcA compare
LRK55_RS07065 +0.4 2.8 GNAT family N-acetyltransferase compare
LRK55_RS14595 +0.4 1.3 hypothetical protein compare
LRK55_RS08005 +0.4 1.7 YbhB/YbcL family Raf kinase inhibitor-like protein compare
LRK55_RS17595 +0.4 0.7 hypothetical protein compare
LRK55_RS01920 +0.4 2.2 YciI family protein compare
LRK55_RS05965 +0.4 0.9 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
LRK55_RS06075 +0.4 1.2 OmpH family outer membrane protein compare
LRK55_RS13245 +0.4 1.5 FliH/SctL family protein compare
LRK55_RS10125 +0.4 0.5 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK55_RS01155 +0.4 2.7 ACR3 family arsenite efflux transporter compare
LRK55_RS18550 +0.4 1.9 hypothetical protein compare
LRK55_RS02915 +0.4 1.2 PsiF family protein compare
LRK55_RS19020 +0.4 1.2 broad-spectrum mercury transporter MerE compare
LRK55_RS10035 +0.4 1.6 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG compare
LRK55_RS01805 +0.4 1.4 MmcQ/YjbR family DNA-binding protein compare
LRK55_RS05750 +0.4 2.9 tRNA dihydrouridine(20/20a) synthase DusA compare
LRK55_RS03075 +0.4 2.6 hypothetical protein compare
LRK55_RS13090 +0.4 1.4 hypothetical protein compare
LRK55_RS08150 +0.4 1.2 GntR family transcriptional regulator compare
LRK55_RS17235 +0.4 1.0 hypothetical protein compare
LRK55_RS00010 +0.4 1.3 phosphoglycerate mutase compare
LRK55_RS06455 +0.4 2.1 glycosyltransferase family 2 protein compare
LRK55_RS13470 +0.4 3.2 lytic transglycosylase domain-containing protein compare
LRK55_RS12015 +0.4 2.6 M23 family metallopeptidase compare
LRK55_RS03485 +0.4 1.5 TlpA disulfide reductase family protein compare
LRK55_RS15755 +0.4 3.3 polyphosphate kinase 1 compare
LRK55_RS14245 +0.4 1.6 CPBP family glutamic-type intramembrane protease compare
LRK55_RS09390 +0.4 1.1 hypothetical protein compare
LRK55_RS07730 +0.4 1.1 nitrogen regulation protein NR(I) compare
LRK55_RS04335 +0.4 2.3 NAD(P)H-binding protein compare
LRK55_RS00630 +0.4 2.3 hypothetical protein compare
LRK55_RS13440 +0.4 2.1 magnesium and cobalt transport protein CorA compare
LRK55_RS11910 +0.4 1.2 FAD-linked oxidase C-terminal domain-containing protein compare
LRK55_RS04910 +0.4 1.8 amidohydrolase family protein compare
LRK55_RS17975 +0.4 2.4 pirin family protein compare
LRK55_RS06765 +0.4 1.8 pseudouridine synthase compare
LRK55_RS14200 +0.4 3.1 hypothetical protein compare
LRK55_RS07300 +0.4 1.0 CsbD family protein compare
LRK55_RS03420 +0.4 1.7 acyl-CoA thioesterase compare
LRK55_RS12705 +0.4 2.4 sugar porter family MFS transporter compare
LRK55_RS11345 +0.4 0.6 FHA domain-containing protein compare
LRK55_RS19405 +0.4 1.0 RES family NAD+ phosphorylase compare
LRK55_RS17810 +0.4 3.1 response regulator transcription factor compare
LRK55_RS14395 +0.4 1.6 NAD(P)/FAD-dependent oxidoreductase compare
LRK55_RS16365 +0.4 1.7 tRNA pseudouridine(13) synthase TruD compare
LRK55_RS00475 +0.4 2.0 dicarboxylate/amino acid:cation symporter compare
LRK55_RS18160 +0.4 2.2 peptide-methionine (S)-S-oxide reductase MsrA compare
LRK55_RS13685 +0.4 0.6 molybdopterin molybdotransferase MoeA compare
LRK55_RS06560 +0.4 0.8 zinc-ribbon and DUF3426 domain-containing protein compare
LRK55_RS14345 +0.4 1.9 NADPH-dependent FMN reductase compare
LRK55_RS00105 +0.4 0.3 tRNA-Gly compare
LRK55_RS05980 +0.4 2.3 murein L,D-transpeptidase catalytic domain family protein compare
LRK55_RS13180 +0.4 0.8 flagellar basal body P-ring protein FlgI compare
LRK55_RS18385 +0.4 0.7 hypothetical protein compare
LRK55_RS04535 +0.4 1.0 hypothetical protein compare
LRK55_RS15370 +0.4 1.0 hypothetical protein compare
LRK55_RS07115 +0.4 0.7 isochorismatase family protein compare
LRK55_RS05455 +0.4 2.6 universal stress protein compare
LRK55_RS11450 +0.4 0.9 PilZ domain-containing protein compare
LRK55_RS05055 +0.4 0.3 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK55_RS10605 +0.4 0.9 tautomerase family protein compare
LRK55_RS00995 +0.4 1.1 AAA family ATPase compare
LRK55_RS16290 +0.4 3.2 cbb3-type cytochrome c oxidase subunit I compare
LRK55_RS06670 +0.4 2.5 FAD-dependent oxidoreductase compare
LRK55_RS18680 +0.4 1.8 TolC family protein compare
LRK55_RS12175 +0.4 1.4 GNAT family N-acetyltransferase compare
LRK55_RS10375 +0.4 2.3 acid phosphatase compare
LRK55_RS15885 +0.4 1.2 TatD family hydrolase compare
LRK55_RS10820 +0.4 3.4 TonB-dependent receptor compare
LRK55_RS13295 +0.4 0.6 flagellar biosynthetic protein FliR compare
LRK55_RS14430 +0.4 1.6 cytochrome c compare
LRK55_RS06030 +0.4 1.4 hypothetical protein compare
LRK55_RS05850 +0.3 1.4 phage tail protein compare
LRK55_RS13210 +0.3 0.7 flagellar export chaperone FliS compare
LRK55_RS16825 +0.3 1.5 LysR family transcriptional regulator compare
LRK55_RS08315 +0.3 1.3 lipoprotein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans MT42 in no stress control experiments