Culturing: Synechocystis_PCC6803_ML3, flask, 100 rpm orbital shaking, growth chamber, continous light, at 30 (C), shaken=air bubling
| Pathway | #Steps | #Present | #Specific |
|---|
| 3-(4-hydroxyphenyl)pyruvate biosynthesis | 1 | 1 | 1 |
| L-aspartate biosynthesis | 1 | 1 | 1 |
| L-aspartate degradation I | 1 | 1 | 1 |
| malate/L-aspartate shuttle pathway | 2 | 2 | 1 |
| L-glutamate degradation II | 2 | 1 | 1 |
| atromentin biosynthesis | 2 | 1 | 1 |
| L-tyrosine degradation II | 2 | 1 | 1 |
| L-tryptophan degradation IV (via indole-3-lactate) | 2 | 1 | 1 |
| UDP-α-D-glucose biosynthesis | 2 | 1 | 1 |
| L-phenylalanine biosynthesis I | 3 | 3 | 1 |
| trehalose degradation V | 3 | 2 | 1 |
| L-tyrosine biosynthesis I | 3 | 2 | 1 |
| GDP-α-D-glucose biosynthesis | 3 | 2 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 2 | 1 |
| sulfolactate degradation III | 3 | 1 | 1 |
| (R)-cysteate degradation | 3 | 1 | 1 |
| L-phenylalanine degradation II (anaerobic) | 3 | 1 | 1 |
| indole-3-acetate biosynthesis VI (bacteria) | 3 | 1 | 1 |
| L-tyrosine degradation IV (to 4-methylphenol) | 3 | 1 | 1 |
| glycogen biosynthesis I (from ADP-D-Glucose) | 4 | 4 | 1 |
| starch degradation V | 4 | 3 | 1 |
| sucrose degradation IV (sucrose phosphorylase) | 4 | 3 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 2 | 1 |
| L-tyrosine degradation III | 4 | 2 | 1 |
| starch degradation III | 4 | 2 | 1 |
| L-phenylalanine degradation III | 4 | 2 | 1 |
| 2-amino-3-carboxymuconate semialdehyde degradation to 2-hydroxypentadienoate | 4 | 1 | 1 |
| L-tryptophan degradation VIII (to tryptophol) | 4 | 1 | 1 |
| 5,5'-dehydrodivanillate degradation | 4 | 1 | 1 |
| glucosylglycerol biosynthesis | 5 | 5 | 1 |
| UDP-N-acetyl-D-glucosamine biosynthesis I | 5 | 5 | 1 |
| dTDP-β-L-rhamnose biosynthesis | 5 | 5 | 1 |
| sucrose degradation II (sucrose synthase) | 5 | 3 | 1 |
| CDP-6-deoxy-D-gulose biosynthesis | 5 | 3 | 1 |
| trans-4-hydroxy-L-proline degradation I | 5 | 3 | 1 |
| superpathway of plastoquinol biosynthesis | 5 | 3 | 1 |
| glucose and glucose-1-phosphate degradation | 5 | 3 | 1 |
| D-galactose degradation I (Leloir pathway) | 5 | 2 | 1 |
| L-tyrosine degradation I | 5 | 2 | 1 |
| protein O-mannosylation II (mammals, core M1 and core M2) | 5 | 1 | 1 |
| 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA | 5 | 1 | 1 |
| protein O-mannosylation III (mammals, core M3) | 5 | 1 | 1 |
| L-phenylalanine degradation VI (reductive Stickland reaction) | 5 | 1 | 1 |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 5 | 1 | 1 |
| L-tyrosine degradation V (reductive Stickland reaction) | 5 | 1 | 1 |
| L-tryptophan degradation XIII (reductive Stickland reaction) | 5 | 1 | 1 |
| O-antigen building blocks biosynthesis (E. coli) | 11 | 10 | 2 |
| C4 photosynthetic carbon assimilation cycle, NAD-ME type | 11 | 6 | 2 |
| TCA cycle VIII (Chlamydia) | 6 | 6 | 1 |
| superpathway of L-threonine biosynthesis | 6 | 6 | 1 |
| glycogen degradation II | 6 | 4 | 1 |
| superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis | 6 | 3 | 1 |
| peptidoglycan maturation (meso-diaminopimelate containing) | 12 | 4 | 2 |
| superpathway of sulfolactate degradation | 6 | 2 | 1 |
| coenzyme M biosynthesis II | 6 | 1 | 1 |
| anaerobic energy metabolism (invertebrates, cytosol) | 7 | 4 | 1 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 6 | 2 |
| 2-nitrobenzoate degradation I | 7 | 1 | 1 |
| glycogen degradation I | 8 | 7 | 1 |
| sucrose biosynthesis II | 8 | 7 | 1 |
| ubiquinol-8 biosynthesis (early decarboxylation) | 8 | 4 | 1 |
| glycogen biosynthesis III (from α-maltose 1-phosphate) | 8 | 2 | 1 |
| protein O-mannosylation I (yeast) | 8 | 1 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 17 | 2 |
| sucrose biosynthesis I (from photosynthesis) | 9 | 8 | 1 |
| chitin biosynthesis | 9 | 5 | 1 |
| superpathway of L-methionine biosynthesis (transsulfuration) | 9 | 5 | 1 |
| L-phenylalanine degradation IV (mammalian, via side chain) | 9 | 3 | 1 |
| superpathway of L-phenylalanine biosynthesis | 10 | 10 | 1 |
| superpathway of L-tyrosine biosynthesis | 10 | 9 | 1 |
| starch biosynthesis | 10 | 6 | 1 |
| CMP-legionaminate biosynthesis I | 10 | 2 | 1 |
| rosmarinic acid biosynthesis I | 10 | 1 | 1 |
| colanic acid building blocks biosynthesis | 11 | 10 | 1 |
| (S)-reticuline biosynthesis I | 11 | 1 | 1 |
| protein N-glycosylation (Haloferax volcanii) | 11 | 1 | 1 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 8 | 1 |
| superpathway of ubiquinol-8 biosynthesis (early decarboxylation) | 12 | 6 | 1 |
| indole-3-acetate biosynthesis II | 12 | 3 | 1 |
| L-tryptophan degradation IX | 12 | 2 | 1 |
| L-tryptophan degradation XII (Geobacillus) | 12 | 2 | 1 |
| superpathway of L-isoleucine biosynthesis I | 13 | 13 | 1 |
| cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) | 13 | 11 | 1 |
| peptidoglycan recycling I | 14 | 9 | 1 |
| superpathway of rosmarinic acid biosynthesis | 14 | 1 | 1 |
| cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) | 15 | 14 | 1 |
| L-tryptophan degradation III (eukaryotic) | 15 | 3 | 1 |
| superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis | 33 | 13 | 2 |
| peptidoglycan biosynthesis IV (Enterococcus faecium) | 17 | 12 | 1 |
| peptidoglycan biosynthesis II (staphylococci) | 17 | 12 | 1 |
| superpathway of anaerobic energy metabolism (invertebrates) | 17 | 9 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 12 | 1 |
| streptomycin biosynthesis | 18 | 2 | 1 |
| superpathway of anaerobic sucrose degradation | 19 | 14 | 1 |
| superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis | 19 | 6 | 1 |
| protein N-glycosylation initial phase (eukaryotic) | 19 | 1 | 1 |
| superpathway of chorismate metabolism | 59 | 43 | 3 |
| tRNA charging | 21 | 20 | 1 |
| L-tryptophan degradation XI (mammalian, via kynurenine) | 23 | 5 | 1 |
| superpathway of UDP-N-acetylglucosamine-derived O-antigen building blocks biosynthesis | 24 | 6 | 1 |
| aspartate superpathway | 25 | 19 | 1 |
| anaerobic aromatic compound degradation (Thauera aromatica) | 27 | 1 | 1 |
| adenosylcobalamin biosynthesis II (aerobic) | 33 | 28 | 1 |
| adenosylcobalamin biosynthesis I (anaerobic) | 36 | 31 | 1 |
| colibactin biosynthesis | 38 | 7 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 20 | 1 |