Experiment set2S566 for Synechocystis sp000284455 PCC 6803

Compare to:

low light; bubbling

200 most important genes:

  gene name fitness t score description  
SGL_RS03625 -11.1 -4.8 glycosyltransferase family 1 protein compare
SGL_RS03590 -10.9 -5.9 ATP-grasp domain-containing protein compare
SGL_RS15130 -10.8 -7.4 dTDP-glucose 4,6-dehydratase compare
SGL_RS03550 -10.7 -7.4 CDP-glucose 4,6-dehydratase compare
SGL_RS03555 -10.4 -10.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS03545 -10.0 -4.2 glucose-1-phosphate cytidylyltransferase compare
SGL_RS13560 -9.9 -11.7 glucose-1-phosphate thymidylyltransferase compare
SGL_RS16670 -9.6 -11.5 DUF5942 domain-containing protein compare
SGL_RS03560 -9.5 -6.6 class I SAM-dependent methyltransferase compare
SGL_RS03585 -9.5 -7.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS00245 -9.4 -14.4 glycosyltransferase compare
SGL_RS00195 -9.3 -11.0 glycosyltransferase family 2 protein compare
SGL_RS03540 -9.2 -6.3 ABC transporter ATP-binding protein compare
SGL_RS17860 -9.1 -3.8 Holliday junction resolvase RuvX compare
SGL_RS15840 -8.9 -14.0 class A beta-lactamase compare
SGL_RS00220 -8.8 -17.3 oligosaccharide flippase family protein compare
SGL_RS00190 -8.7 -10.2 sulfotransferase compare
SGL_RS19460 -8.6 -3.5 hypothetical protein compare
SGL_RS17230 -8.5 -5.9 L-aspartate oxidase compare
SGL_RS16770 -8.5 -5.0 LptF/LptG family permease compare
SGL_RS03520 -8.3 -4.6 ABC transporter permease compare
SGL_RS10775 -8.3 -7.1 DUF3326 domain-containing protein compare
SGL_RS17405 -8.3 -5.7 L-2-hydroxyglutarate oxidase compare
SGL_RS14930 -8.2 -5.7 type I methionyl aminopeptidase compare
SGL_RS03630 -8.0 -5.6 glycosyltransferase family 2 protein compare
SGL_RS17740 -8.0 -9.6 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
SGL_RS03850 -7.9 -4.6 biopolymer transporter ExbD compare
SGL_RS09430 -7.8 -18.7 leucyl aminopeptidase compare
SGL_RS03845 -7.8 -5.4 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS03275 -7.8 -14.0 UDP-glucose/GDP-mannose dehydrogenase family protein compare
SGL_RS17330 -7.7 -5.3 biosynthetic arginine decarboxylase compare
SGL_RS02145 -7.7 -7.5 metallophosphoesterase compare
SGL_RS02095 -7.7 -4.9 dTDP-4-dehydrorhamnose reductase compare
SGL_RS12870 -7.7 -4.2 YqeG family HAD IIIA-type phosphatase compare
SGL_RS17125 -7.7 -4.3 inositol monophosphatase family protein compare
SGL_RS06440 -7.5 -5.2 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS15425 -7.5 -5.2 cobalamin biosynthesis protein CobW compare
SGL_RS18365 -7.5 -11.4 glycosyltransferase family 9 protein compare
SGL_RS10790 -7.5 -4.3 DUF4359 domain-containing protein compare
SGL_RS16705 -7.4 -4.9 diadenylate cyclase CdaA compare
SGL_RS03060 -7.3 -4.8 phosphoadenosine phosphosulfate reductase compare
SGL_RS02850 -7.2 -5.9 uracil phosphoribosyltransferase compare
SGL_RS12755 -7.2 -14.7 IMS domain-containing protein compare
SGL_RS12335 -7.1 -4.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS18320 -7.1 -10.8 serine/threonine-protein kinase compare
SGL_RS11325 -7.0 -4.8 pitrilysin family protein compare
SGL_RS13495 -7.0 -12.6 AarF/ABC1/UbiB kinase family protein compare
SGL_RS11760 -6.9 -10.8 radical SAM protein compare
SGL_RS11945 -6.8 -10.4 sirohydrochlorin chelatase compare
SGL_RS14560 -6.8 -8.0 hypothetical protein compare
SGL_RS06130 -6.8 -4.1 anti-sigma regulatory factor compare
SGL_RS16940 -6.7 -3.3 dephospho-CoA kinase compare
SGL_RS13465 -6.7 -9.6 class II fumarate hydratase compare
SGL_RS03365 -6.7 -3.3 Ycf66 family protein compare
SGL_RS05210 -6.7 -7.2 SLBB domain-containing protein compare
SGL_RS02305 -6.6 -9.1 NAD-dependent malic enzyme compare
SGL_RS09820 -6.6 -3.7 ribosome maturation factor RimM compare
SGL_RS11510 -6.5 -3.6 dihydroneopterin aldolase compare
SGL_RS00225 -6.5 -18.4 glycosyltransferase compare
SGL_RS05500 -6.5 -14.3 ribonuclease R compare
SGL_RS09715 -6.4 -10.7 pitrilysin family protein compare
SGL_RS02460 -6.4 -4.7 phosphate signaling complex protein PhoU compare
SGL_RS13510 -6.4 -4.4 transglycosylase domain-containing protein compare
SGL_RS11305 -6.4 -4.4 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS02375 -6.3 -9.0 DUF3086 domain-containing protein compare
SGL_RS13870 -6.3 -4.3 rRNA maturation RNase YbeY compare
SGL_RS09890 -6.2 -4.6 DUF3007 family protein compare
SGL_RS12770 -6.2 -3.7 uroporphyrinogen-III C-methyltransferase compare
SGL_RS14505 -6.2 -6.0 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS04335 -6.2 -5.9 GNAT family N-acetyltransferase compare
SGL_RS07200 -6.2 -4.3 LCP family protein compare
SGL_RS12490 -6.0 -5.8 glutamate--cysteine ligase compare
SGL_RS13910 -5.9 -3.3 phasin family protein compare
SGL_RS12030 -5.9 -5.8 extracellular solute-binding protein compare
SGL_RS05435 -5.9 -4.1 heavy metal translocating P-type ATPase compare
SGL_RS03840 -5.9 -2.9 adenylyl-sulfate kinase compare
SGL_RS07840 -5.8 -3.2 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS06595 -5.8 -4.0 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS02955 -5.8 -3.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS17380 -5.7 -23.1 glutamate synthase large subunit compare
SGL_RS11000 -5.7 -3.9 sulfate adenylyltransferase compare
SGL_RS12745 -5.7 -3.9 glycine cleavage system aminomethyltransferase GcvT compare
SGL_RS13370 -5.7 -3.7 exonuclease SbcCD subunit D compare
SGL_RS06430 -5.7 -2.4 glycosyltransferase family 2 protein compare
SGL_RS03085 -5.7 -1.7 DUF2862 domain-containing protein compare
SGL_RS14430 -5.6 -5.5 cobalt ECF transporter T component CbiQ compare
SGL_RS07870 -5.6 -3.4 Ycf51 family protein compare
SGL_RS02580 -5.6 -2.8 DUF1818 family protein compare
SGL_RS03380 -5.6 -11.9 sulfite reductase, ferredoxin dependent compare
SGL_RS16880 -5.6 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS18270 -5.5 -5.2 family 10 glycosylhydrolase compare
SGL_RS04510 -5.5 -6.9 DUF561 domain-containing protein compare
SGL_RS06590 -5.5 -3.8 nitrate ABC transporter permease compare
SGL_RS14920 -5.5 -3.3 cation:proton antiporter compare
SGL_RS18180 -5.5 -5.3 ABC transporter permease compare
SGL_RS15045 -5.5 -11.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS14285 -5.5 -2.9 hypothetical protein compare
SGL_RS16950 -5.4 -10.2 phosphoketolase compare
SGL_RS16690 -5.4 -5.4 adenosine kinase compare
SGL_RS03640 -5.4 -5.2 UDP-glucose 4-epimerase GalE compare
SGL_RS03250 -5.4 -5.9 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS06780 -5.4 -4.3 hypothetical protein compare
SGL_RS16860 -5.4 -9.9 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS06585 -5.3 -3.7 nitrate ABC transporter ATP-binding protein compare
SGL_RS16545 -5.3 -12.2 LdpA C-terminal domain-containing domain compare
SGL_RS05980 -5.3 -5.1 hypothetical protein compare
SGL_RS02665 -5.3 -2.2 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS05465 -5.3 -2.8 hypothetical protein compare
SGL_RS06775 -5.3 -2.8 type II toxin-antitoxin system PemK/MazF family toxin compare
SGL_RS04230 -5.2 -3.3 exonuclease subunit SbcC compare
SGL_RS14540 -5.2 -2.2 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS06750 -5.2 -13.2 DUF192 domain-containing protein compare
SGL_RS13005 -5.2 -18.2 cysteine desulfurase family protein compare
SGL_RS03635 -5.2 -3.4 glycosyltransferase family 4 protein compare
SGL_RS10480 -5.1 -10.7 metallophosphoesterase family protein compare
SGL_RS17305 -5.1 -3.5 pyrroline-5-carboxylate reductase compare
SGL_RS07170 -5.1 -2.1 glycine cleavage system protein GcvH compare
SGL_RS11025 -5.1 -8.4 oxidoreductase compare
SGL_RS18215 -5.0 -4.6 pentapeptide repeat-containing protein compare
SGL_RS13490 -5.0 -8.6 aspartate aminotransferase compare
SGL_RS02475 -5.0 -1.7 YlxR family protein compare
SGL_RS16100 -5.0 -8.3 heavy metal translocating P-type ATPase compare
SGL_RS14860 -4.9 -3.4 8-amino-7-oxononanoate synthase compare
SGL_RS00255 -4.9 -16.7 glycosyltransferase family 2 protein compare
SGL_RS12575 -4.9 -3.4 riboflavin synthase compare
SGL_RS06355 -4.9 -3.2 carbon dioxide-concentrating mechanism protein CcmK compare
SGL_RS03005 -4.9 -3.3 nucleoside recognition domain-containing protein compare
SGL_RS18300 -4.9 -3.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS08275 -4.9 -3.4 tetratricopeptide repeat protein compare
SGL_RS11955 -4.9 -3.4 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS17650 -4.9 -3.7 hypothetical protein compare
SGL_RS04650 -4.9 -10.0 tetratricopeptide repeat protein compare
SGL_RS03505 -4.8 -15.9 exopolysaccharide transport family protein compare
SGL_RS05470 -4.8 -3.3 dihydropteroate synthase compare
SGL_RS13685 -4.8 -12.1 ABC transporter ATP-binding protein compare
SGL_RS12545 -4.8 -3.2 GTPase Era compare
SGL_RS09905 -4.8 -3.3 biotin/lipoate A/B protein ligase family protein compare
SGL_RS03685 -4.7 -9.6 glycosyltransferase compare
SGL_RS17470 -4.7 -4.5 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS13055 -4.7 -3.0 protein translocase subunit SecF compare
SGL_RS08710 -4.7 -3.2 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS12585 -4.6 -3.2 ABC transporter permease subunit compare
SGL_RS03420 -4.6 -6.9 UbiD family decarboxylase compare
SGL_RS04775 -4.6 -4.7 alpha/beta hydrolase compare
SGL_RS05440 -4.6 -2.7 ACP S-malonyltransferase compare
SGL_RS03655 -4.6 -6.3 glycosyltransferase family 2 protein compare
SGL_RS07605 -4.6 -2.7 HEAT repeat domain-containing protein compare
SGL_RS15655 -4.5 -17.9 asparaginase compare
SGL_RS14425 -4.5 -4.0 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS09395 -4.5 -3.1 aldo/keto reductase compare
SGL_RS08965 -4.5 -13.9 chlorophyll a/b binding light-harvesting protein compare
SGL_RS01900 -4.5 -7.0 GDP-L-fucose synthase compare
SGL_RS16735 -4.5 -2.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS08175 -4.4 -3.0 serine hydrolase compare
SGL_RS02840 -4.4 -3.6 MBL fold metallo-hydrolase compare
SGL_RS14335 -4.4 -2.8 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS02740 -4.4 -6.3 HAS-barrel domain-containing protein compare
SGL_RS14105 -4.3 -3.0 2-succinylbenzoate--CoA ligase compare
SGL_RS15560 -4.3 -2.9 dethiobiotin synthase compare
SGL_RS03605 -4.3 -10.5 cephalosporin hydroxylase family protein compare
SGL_RS15700 -4.2 -10.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS03000 -4.2 -5.2 spore maturation protein compare
SGL_RS15925 -4.2 -14.0 ATP-binding protein compare
SGL_RS14445 -4.2 -4.2 hypothetical protein compare
SGL_RS04550 -4.2 -6.8 glutamate 5-kinase compare
SGL_RS03670 -4.2 -3.2 glycosyltransferase compare
SGL_RS17340 -4.2 -1.3 quinolinate synthase NadA compare
SGL_RS13535 -4.2 -2.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS11040 -4.2 -10.5 TMEM165/GDT1 family protein compare
SGL_RS07285 -4.2 -11.5 N-acetylmuramoyl-L-alanine amidase compare
SGL_RS04525 -4.1 -4.0 photosynthesis system II assembly factor Ycf48 compare
SGL_RS03185 -4.1 -2.8 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS07935 -4.1 -3.9 hypothetical protein compare
SGL_RS15620 -4.1 -2.8 cobyric acid synthase CobQ compare
SGL_RS15435 -4.1 -11.3 PD40 domain-containing protein compare
SGL_RS02260 -4.1 -2.7 HEAT repeat domain-containing protein compare
SGL_RS09385 -4.1 -2.4 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS03790 -4.1 -2.8 GTPase ObgE compare
SGL_RS03675 -4.0 -4.1 hypothetical protein compare
SGL_RS12660 -3.9 -10.0 DNA double-strand break repair nuclease NurA compare
SGL_RS11135 -3.9 -1.3 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS05880 -3.9 -5.6 sugar ABC transporter substrate-binding protein compare
SGL_RS16840 -3.9 -6.9 TMEM165/GDT1 family protein compare
SGL_RS17520 -3.9 -4.6 DUF3352 domain-containing protein compare
SGL_RS01905 -3.9 -12.4 GDP-mannose 4,6-dehydratase compare
SGL_RS19585 -3.9 -3.4 hypothetical protein compare
SGL_RS03425 -3.8 -3.5 precorrin-3B C(17)-methyltransferase compare
SGL_RS06340 -3.8 -9.4 response regulator transcription factor compare
SGL_RS10065 -3.8 -12.2 four-carbon acid sugar kinase family protein compare
SGL_RS10160 -3.8 -6.8 B12-binding domain-containing radical SAM protein compare
SGL_RS02220 -3.8 -2.6 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS19475 -3.8 -2.0 hypothetical protein compare
SGL_RS12235 -3.7 -2.9 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS02795 -3.7 -6.0 flavin prenyltransferase UbiX compare
SGL_RS12400 -3.6 -2.5 lysophospholipid acyltransferase family protein compare
SGL_RS14300 -3.6 -16.9 HAMP domain-containing sensor histidine kinase compare
SGL_RS04720 -3.5 -2.4 iron uptake porin compare
SGL_RS16360 -3.5 -2.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS08605 -3.5 -5.8 DUF3120 domain-containing protein compare
SGL_RS10255 -3.5 -7.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in light_bubbling experiments