Experiment set2S551 for Synechocystis sp000284455 PCC 6803

Compare to:

low light; bubbling

200 most important genes:

  gene name fitness t score description  
SGL_RS03590 -11.2 -6.4 ATP-grasp domain-containing protein compare
SGL_RS15130 -11.0 -7.6 dTDP-glucose 4,6-dehydratase compare
SGL_RS03550 -10.9 -7.6 CDP-glucose 4,6-dehydratase compare
SGL_RS03625 -10.7 -7.3 glycosyltransferase family 1 protein compare
SGL_RS00190 -10.3 -10.0 sulfotransferase compare
SGL_RS03560 -9.8 -6.8 class I SAM-dependent methyltransferase compare
SGL_RS00245 -9.8 -16.3 glycosyltransferase compare
SGL_RS03555 -9.7 -11.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS00195 -9.6 -11.4 glycosyltransferase family 2 protein compare
SGL_RS03540 -9.4 -6.5 ABC transporter ATP-binding protein compare
SGL_RS03585 -9.3 -7.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS13560 -9.2 -14.2 glucose-1-phosphate thymidylyltransferase compare
SGL_RS16670 -9.2 -15.3 DUF5942 domain-containing protein compare
SGL_RS19460 -8.9 -3.8 hypothetical protein compare
SGL_RS00220 -8.8 -18.8 oligosaccharide flippase family protein compare
SGL_RS16770 -8.7 -5.3 LptF/LptG family permease compare
SGL_RS03520 -8.6 -5.0 ABC transporter permease compare
SGL_RS09820 -8.5 -3.9 ribosome maturation factor RimM compare
SGL_RS17405 -8.5 -5.9 L-2-hydroxyglutarate oxidase compare
SGL_RS14930 -8.5 -5.9 type I methionyl aminopeptidase compare
SGL_RS17230 -8.1 -7.8 L-aspartate oxidase compare
SGL_RS03845 -8.1 -5.6 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS12870 -8.0 -4.7 YqeG family HAD IIIA-type phosphatase compare
SGL_RS15840 -8.0 -15.2 class A beta-lactamase compare
SGL_RS17330 -7.9 -5.5 biosynthetic arginine decarboxylase compare
SGL_RS17860 -7.9 -4.7 Holliday junction resolvase RuvX compare
SGL_RS18320 -7.7 -7.5 serine/threonine-protein kinase compare
SGL_RS15425 -7.7 -5.3 cobalamin biosynthesis protein CobW compare
SGL_RS16705 -7.7 -5.3 diadenylate cyclase CdaA compare
SGL_RS03060 -7.6 -5.2 phosphoadenosine phosphosulfate reductase compare
SGL_RS12335 -7.4 -5.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS17740 -7.1 -13.2 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
SGL_RS13370 -7.1 -3.7 exonuclease SbcCD subunit D compare
SGL_RS17125 -7.0 -5.3 inositol monophosphatase family protein compare
SGL_RS02460 -6.9 -5.4 phosphate signaling complex protein PhoU compare
SGL_RS03545 -6.9 -6.3 glucose-1-phosphate cytidylyltransferase compare
SGL_RS02095 -6.8 -6.2 dTDP-4-dehydrorhamnose reductase compare
SGL_RS11510 -6.8 -4.0 dihydroneopterin aldolase compare
SGL_RS12755 -6.8 -16.6 IMS domain-containing protein compare
SGL_RS06775 -6.8 -3.7 type II toxin-antitoxin system PemK/MazF family toxin compare
SGL_RS03275 -6.7 -18.8 UDP-glucose/GDP-mannose dehydrogenase family protein compare
SGL_RS11305 -6.7 -4.6 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS11325 -6.6 -7.9 pitrilysin family protein compare
SGL_RS03640 -6.6 -9.2 UDP-glucose 4-epimerase GalE compare
SGL_RS12770 -6.6 -4.1 uroporphyrinogen-III C-methyltransferase compare
SGL_RS13870 -6.5 -4.5 rRNA maturation RNase YbeY compare
SGL_RS06780 -6.5 -6.5 hypothetical protein compare
SGL_RS06130 -6.3 -5.2 anti-sigma regulatory factor compare
SGL_RS03850 -6.3 -5.5 biopolymer transporter ExbD compare
SGL_RS11760 -6.2 -10.9 radical SAM protein compare
SGL_RS05435 -6.2 -4.3 heavy metal translocating P-type ATPase compare
SGL_RS03840 -6.2 -3.2 adenylyl-sulfate kinase compare
SGL_RS07200 -6.1 -5.9 LCP family protein compare
SGL_RS19475 -6.0 -2.2 hypothetical protein compare
SGL_RS00225 -6.0 -24.3 glycosyltransferase compare
SGL_RS12745 -6.0 -4.1 glycine cleavage system aminomethyltransferase GcvT compare
SGL_RS06430 -6.0 -2.7 glycosyltransferase family 2 protein compare
SGL_RS18365 -6.0 -13.3 glycosyltransferase family 9 protein compare
SGL_RS12490 -5.9 -7.0 glutamate--cysteine ligase compare
SGL_RS05210 -5.9 -9.2 SLBB domain-containing protein compare
SGL_RS05980 -5.9 -4.1 hypothetical protein compare
SGL_RS03085 -5.9 -1.8 DUF2862 domain-containing protein compare
SGL_RS13510 -5.9 -9.7 transglycosylase domain-containing protein compare
SGL_RS18270 -5.9 -4.5 family 10 glycosylhydrolase compare
SGL_RS17650 -5.8 -3.4 hypothetical protein compare
SGL_RS16880 -5.8 -2.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS05500 -5.8 -15.8 ribonuclease R compare
SGL_RS03365 -5.8 -4.9 Ycf66 family protein compare
SGL_RS14920 -5.7 -3.6 cation:proton antiporter compare
SGL_RS14285 -5.7 -3.2 hypothetical protein compare
SGL_RS11000 -5.7 -5.5 sulfate adenylyltransferase compare
SGL_RS02305 -5.7 -7.1 NAD-dependent malic enzyme compare
SGL_RS14560 -5.7 -5.8 hypothetical protein compare
SGL_RS06585 -5.7 -3.9 nitrate ABC transporter ATP-binding protein compare
SGL_RS02375 -5.6 -11.1 DUF3086 domain-containing protein compare
SGL_RS05465 -5.6 -3.2 hypothetical protein compare
SGL_RS09715 -5.5 -12.3 pitrilysin family protein compare
SGL_RS09430 -5.5 -24.9 leucyl aminopeptidase compare
SGL_RS03655 -5.5 -7.5 glycosyltransferase family 2 protein compare
SGL_RS03630 -5.4 -6.1 glycosyltransferase family 2 protein compare
SGL_RS14540 -5.4 -2.4 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS11945 -5.4 -11.2 sirohydrochlorin chelatase compare
SGL_RS06595 -5.4 -6.0 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS07170 -5.4 -2.3 glycine cleavage system protein GcvH compare
SGL_RS04335 -5.4 -5.9 GNAT family N-acetyltransferase compare
SGL_RS14505 -5.4 -9.0 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS07840 -5.4 -3.9 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS13465 -5.3 -6.4 class II fumarate hydratase compare
SGL_RS12575 -5.2 -3.6 riboflavin synthase compare
SGL_RS11955 -5.2 -3.6 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS08275 -5.2 -3.6 tetratricopeptide repeat protein compare
SGL_RS14430 -5.1 -7.3 cobalt ECF transporter T component CbiQ compare
SGL_RS05470 -5.1 -3.5 dihydropteroate synthase compare
SGL_RS16100 -5.1 -9.1 heavy metal translocating P-type ATPase compare
SGL_RS09905 -5.1 -3.5 biotin/lipoate A/B protein ligase family protein compare
SGL_RS17305 -5.0 -4.8 pyrroline-5-carboxylate reductase compare
SGL_RS03675 -5.0 -4.1 hypothetical protein compare
SGL_RS16940 -5.0 -4.2 dephospho-CoA kinase compare
SGL_RS07870 -4.9 -4.2 Ycf51 family protein compare
SGL_RS08710 -4.9 -3.4 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS06590 -4.9 -7.4 nitrate ABC transporter permease compare
SGL_RS17470 -4.9 -4.8 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS12585 -4.9 -3.4 ABC transporter permease subunit compare
SGL_RS11025 -4.9 -9.5 oxidoreductase compare
SGL_RS05440 -4.9 -3.0 ACP S-malonyltransferase compare
SGL_RS12030 -4.8 -8.0 extracellular solute-binding protein compare
SGL_RS09395 -4.8 -3.3 aldo/keto reductase compare
SGL_RS02145 -4.8 -12.9 metallophosphoesterase compare
SGL_RS02850 -4.8 -5.2 uracil phosphoribosyltransferase compare
SGL_RS10160 -4.8 -10.4 B12-binding domain-containing radical SAM protein compare
SGL_RS12545 -4.8 -3.1 GTPase Era compare
SGL_RS10480 -4.7 -12.0 metallophosphoesterase family protein compare
SGL_RS17520 -4.7 -3.3 DUF3352 domain-containing protein compare
SGL_RS04230 -4.7 -4.3 exonuclease subunit SbcC compare
SGL_RS13910 -4.7 -6.1 phasin family protein compare
SGL_RS13490 -4.6 -9.7 aspartate aminotransferase compare
SGL_RS03005 -4.6 -3.9 nucleoside recognition domain-containing protein compare
SGL_RS14335 -4.6 -3.2 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS06440 -4.6 -7.8 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS03685 -4.6 -14.8 glycosyltransferase compare
SGL_RS06750 -4.6 -14.3 DUF192 domain-containing protein compare
SGL_RS15045 -4.6 -11.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS14105 -4.6 -3.1 2-succinylbenzoate--CoA ligase compare
SGL_RS18300 -4.6 -6.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS18180 -4.5 -8.3 ABC transporter permease compare
SGL_RS17380 -4.5 -24.4 glutamate synthase large subunit compare
SGL_RS09890 -4.5 -3.8 DUF3007 family protein compare
SGL_RS16950 -4.5 -12.7 phosphoketolase compare
SGL_RS03425 -4.4 -3.0 precorrin-3B C(17)-methyltransferase compare
SGL_RS00255 -4.4 -19.2 glycosyltransferase family 2 protein compare
SGL_RS03185 -4.4 -3.0 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS09385 -4.4 -2.7 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS13495 -4.3 -15.5 AarF/ABC1/UbiB kinase family protein compare
SGL_RS17340 -4.3 -1.4 quinolinate synthase NadA compare
SGL_RS04775 -4.3 -6.4 alpha/beta hydrolase compare
SGL_RS08175 -4.3 -5.1 serine hydrolase compare
SGL_RS03670 -4.3 -3.3 glycosyltransferase compare
SGL_RS08965 -4.3 -15.4 chlorophyll a/b binding light-harvesting protein compare
SGL_RS04650 -4.3 -9.5 tetratricopeptide repeat protein compare
SGL_RS03505 -4.3 -19.4 exopolysaccharide transport family protein compare
SGL_RS02580 -4.3 -3.3 DUF1818 family protein compare
SGL_RS15620 -4.3 -2.9 cobyric acid synthase CobQ compare
SGL_RS16545 -4.2 -14.0 LdpA C-terminal domain-containing domain compare
SGL_RS07605 -4.2 -3.5 HEAT repeat domain-containing protein compare
SGL_RS04510 -4.2 -7.8 DUF561 domain-containing protein compare
SGL_RS11135 -4.2 -1.5 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS11040 -4.1 -10.0 TMEM165/GDT1 family protein compare
SGL_RS15560 -4.1 -3.9 dethiobiotin synthase compare
SGL_RS16860 -4.0 -10.8 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS13005 -4.0 -15.3 cysteine desulfurase family protein compare
SGL_RS18215 -4.0 -7.1 pentapeptide repeat-containing protein compare
SGL_RS08080 -4.0 -6.7 Fur family transcriptional regulator compare
SGL_RS16690 -4.0 -7.0 adenosine kinase compare
SGL_RS10790 -4.0 -7.0 DUF4359 domain-containing protein compare
SGL_RS14860 -4.0 -6.5 8-amino-7-oxononanoate synthase compare
SGL_RS03605 -3.9 -15.7 cephalosporin hydroxylase family protein compare
SGL_RS13055 -3.9 -4.3 protein translocase subunit SecF compare
SGL_RS03000 -3.9 -7.3 spore maturation protein compare
SGL_RS03250 -3.9 -6.4 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS07285 -3.9 -11.7 N-acetylmuramoyl-L-alanine amidase compare
SGL_RS15925 -3.9 -14.3 ATP-binding protein compare
SGL_RS03635 -3.8 -6.3 glycosyltransferase family 4 protein compare
SGL_RS10775 -3.8 -5.5 DUF3326 domain-containing protein compare
SGL_RS13685 -3.8 -14.4 ABC transporter ATP-binding protein compare
SGL_RS03790 -3.8 -3.6 GTPase ObgE compare
SGL_RS07935 -3.8 -5.4 hypothetical protein compare
SGL_RS04720 -3.8 -2.6 iron uptake porin compare
SGL_RS02220 -3.7 -3.6 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS14445 -3.7 -4.4 hypothetical protein compare
SGL_RS12660 -3.7 -12.8 DNA double-strand break repair nuclease NurA compare
SGL_RS09860 -3.7 -5.6 carotenoid biosynthesis protein compare
SGL_RS10320 -3.7 -3.7 ribosome biogenesis GTPase Der compare
SGL_RS04525 -3.7 -4.9 photosynthesis system II assembly factor Ycf48 compare
SGL_RS02740 -3.6 -7.8 HAS-barrel domain-containing protein compare
SGL_RS02795 -3.6 -7.6 flavin prenyltransferase UbiX compare
SGL_RS00320 -3.6 -5.0 helix-turn-helix transcriptional regulator compare
SGL_RS15655 -3.5 -15.5 asparaginase compare
SGL_RS13535 -3.5 -3.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS01900 -3.5 -7.5 GDP-L-fucose synthase compare
SGL_RS15435 -3.4 -10.2 PD40 domain-containing protein compare
SGL_RS04550 -3.4 -9.8 glutamate 5-kinase compare
SGL_RS15700 -3.4 -11.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS12400 -3.4 -4.5 lysophospholipid acyltransferase family protein compare
SGL_RS03380 -3.4 -9.9 sulfite reductase, ferredoxin dependent compare
SGL_RS06355 -3.4 -3.8 carbon dioxide-concentrating mechanism protein CcmK compare
SGL_RS16360 -3.3 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS15530 -3.3 -3.0 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS10245 -3.3 -4.3 glycoside hydrolase family protein compare
SGL_RS02840 -3.3 -4.4 MBL fold metallo-hydrolase compare
SGL_RS09660 -3.3 -5.8 RelA/SpoT family protein compare
SGL_RS02260 -3.2 -3.0 HEAT repeat domain-containing protein compare
SGL_RS09720 -3.2 -4.8 beta-ketoacyl-ACP synthase compare
SGL_RS15370 -3.2 -4.6 DnaJ C-terminal domain-containing protein compare
SGL_RS02475 -3.2 -1.7 YlxR family protein compare
SGL_RS02665 -3.2 -1.9 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS08765 -3.1 -2.0 2-phosphosulfolactate phosphatase family protein compare
SGL_RS10255 -3.1 -6.2 hypothetical protein compare
SGL_RS19585 -3.1 -4.1 hypothetical protein compare
SGL_RS16735 -3.1 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS08535 -3.0 -3.2 NIL domain-containing protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in light_bubbling experiments