Experiment set2S515 for Synechocystis sp000284455 PCC 6803

Compare to:

low light; bubbling

200 most important genes:

  gene name fitness t score description  
SGL_RS17405 -8.5 -5.9 L-2-hydroxyglutarate oxidase compare
SGL_RS03520 -8.3 -5.7 ABC transporter permease compare
SGL_RS15130 -8.2 -11.8 dTDP-glucose 4,6-dehydratase compare
SGL_RS03625 -8.1 -11.8 glycosyltransferase family 1 protein compare
SGL_RS12870 -7.9 -5.4 YqeG family HAD IIIA-type phosphatase compare
SGL_RS12335 -7.4 -5.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS17230 -7.4 -9.2 L-aspartate oxidase compare
SGL_RS16880 -6.9 -4.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS17330 -6.8 -11.3 biosynthetic arginine decarboxylase compare
SGL_RS03845 -6.8 -6.9 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS14930 -6.7 -7.3 type I methionyl aminopeptidase compare
SGL_RS16770 -6.6 -8.1 LptF/LptG family permease compare
SGL_RS12490 -6.6 -6.4 glutamate--cysteine ligase compare
SGL_RS03840 -6.5 -4.4 adenylyl-sulfate kinase compare
SGL_RS02095 -6.5 -9.8 dTDP-4-dehydrorhamnose reductase compare
SGL_RS03540 -6.4 -10.1 ABC transporter ATP-binding protein compare
SGL_RS06585 -6.4 -4.4 nitrate ABC transporter ATP-binding protein compare
SGL_RS16705 -6.3 -7.4 diadenylate cyclase CdaA compare
SGL_RS13870 -6.2 -6.0 rRNA maturation RNase YbeY compare
SGL_RS15425 -6.0 -9.1 cobalamin biosynthesis protein CobW compare
SGL_RS12770 -6.0 -5.8 uroporphyrinogen-III C-methyltransferase compare
SGL_RS07200 -5.9 -5.7 LCP family protein compare
SGL_RS06130 -5.9 -5.7 anti-sigma regulatory factor compare
SGL_RS06430 -5.9 -3.4 glycosyltransferase family 2 protein compare
SGL_RS12030 -5.8 -7.8 extracellular solute-binding protein compare
SGL_RS07840 -5.7 -3.9 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS11305 -5.7 -7.7 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS04335 -5.6 -8.7 GNAT family N-acetyltransferase compare
SGL_RS11325 -5.5 -9.2 pitrilysin family protein compare
SGL_RS17650 -5.5 -3.8 hypothetical protein compare
SGL_RS03550 -5.4 -16.6 CDP-glucose 4,6-dehydratase compare
SGL_RS05980 -5.4 -3.7 hypothetical protein compare
SGL_RS13510 -5.2 -11.1 transglycosylase domain-containing protein compare
SGL_RS12745 -5.2 -3.6 glycine cleavage system aminomethyltransferase GcvT compare
SGL_RS16100 -5.2 -13.8 heavy metal translocating P-type ATPase compare
SGL_RS14105 -5.1 -5.0 2-succinylbenzoate--CoA ligase compare
SGL_RS02460 -5.1 -4.7 phosphate signaling complex protein PhoU compare
SGL_RS07170 -5.1 -3.8 glycine cleavage system protein GcvH compare
SGL_RS08175 -5.1 -3.5 serine hydrolase compare
SGL_RS04720 -5.1 -3.5 iron uptake porin compare
SGL_RS16690 -5.1 -6.3 adenosine kinase compare
SGL_RS08765 -5.1 -3.2 2-phosphosulfolactate phosphatase family protein compare
SGL_RS15530 -5.0 -3.5 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS14540 -5.0 -2.9 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS17305 -5.0 -3.4 pyrroline-5-carboxylate reductase compare
SGL_RS11000 -4.9 -7.4 sulfate adenylyltransferase compare
SGL_RS02665 -4.9 -5.1 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS05435 -4.9 -3.4 heavy metal translocating P-type ATPase compare
SGL_RS13560 -4.8 -12.6 glucose-1-phosphate thymidylyltransferase compare
SGL_RS14430 -4.8 -9.6 cobalt ECF transporter T component CbiQ compare
SGL_RS14920 -4.8 -3.3 cation:proton antiporter compare
SGL_RS04550 -4.8 -9.7 glutamate 5-kinase compare
SGL_RS16670 -4.8 -15.1 DUF5942 domain-containing protein compare
SGL_RS14560 -4.7 -3.8 hypothetical protein compare
SGL_RS09905 -4.7 -4.6 biotin/lipoate A/B protein ligase family protein compare
SGL_RS02850 -4.7 -6.9 uracil phosphoribosyltransferase compare
SGL_RS03085 -4.7 -2.3 DUF2862 domain-containing protein compare
SGL_RS03850 -4.6 -6.2 biopolymer transporter ExbD compare
SGL_RS06590 -4.6 -9.2 nitrate ABC transporter permease compare
SGL_RS16360 -4.6 -6.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS05440 -4.6 -3.1 ACP S-malonyltransferase compare
SGL_RS08275 -4.6 -5.3 tetratricopeptide repeat protein compare
SGL_RS12400 -4.6 -6.2 lysophospholipid acyltransferase family protein compare
SGL_RS12575 -4.5 -5.9 riboflavin synthase compare
SGL_RS00195 -4.5 -19.5 glycosyltransferase family 2 protein compare
SGL_RS14505 -4.5 -8.9 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS14435 -4.5 -2.1 cobalt transporter CbiM compare
SGL_RS10320 -4.5 -4.3 ribosome biogenesis GTPase Der compare
SGL_RS06595 -4.4 -7.9 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS00190 -4.4 -19.4 sulfotransferase compare
SGL_RS14445 -4.3 -7.7 hypothetical protein compare
SGL_RS03365 -4.3 -6.9 Ycf66 family protein compare
SGL_RS18270 -4.3 -5.9 family 10 glycosylhydrolase compare
SGL_RS05465 -4.2 -6.7 hypothetical protein compare
SGL_RS11955 -4.2 -5.6 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS12585 -4.2 -5.6 ABC transporter permease subunit compare
SGL_RS18300 -4.1 -7.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS03560 -4.1 -9.4 class I SAM-dependent methyltransferase compare
SGL_RS13055 -4.1 -2.8 protein translocase subunit SecF compare
SGL_RS11135 -4.1 -1.9 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS00245 -4.1 -22.6 glycosyltransferase compare
SGL_RS18320 -4.1 -13.3 serine/threonine-protein kinase compare
SGL_RS12985 -4.1 -4.7 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase compare
SGL_RS18365 -4.1 -16.1 glycosyltransferase family 9 protein compare
SGL_RS17520 -3.9 -8.4 DUF3352 domain-containing protein compare
SGL_RS07605 -3.9 -5.2 HEAT repeat domain-containing protein compare
SGL_RS02475 -3.9 -2.0 YlxR family protein compare
SGL_RS03590 -3.9 -6.1 ATP-grasp domain-containing protein compare
SGL_RS00220 -3.8 -24.6 oligosaccharide flippase family protein compare
SGL_RS11510 -3.7 -7.1 dihydroneopterin aldolase compare
SGL_RS14425 -3.7 -5.2 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS08710 -3.7 -4.3 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS04525 -3.7 -4.9 photosynthesis system II assembly factor Ycf48 compare
SGL_RS07870 -3.6 -5.5 Ycf51 family protein compare
SGL_RS05470 -3.6 -6.3 dihydropteroate synthase compare
SGL_RS16940 -3.6 -4.1 dephospho-CoA kinase compare
SGL_RS03250 -3.5 -6.0 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS09395 -3.5 -6.0 aldo/keto reductase compare
SGL_RS02260 -3.5 -2.9 HEAT repeat domain-containing protein compare
SGL_RS11835 -3.5 -6.0 transcription antitermination factor NusB compare
SGL_RS03555 -3.4 -15.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS02220 -3.4 -6.3 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS09385 -3.4 -4.4 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS14780 -3.4 -11.8 cyanase compare
SGL_RS15045 -3.4 -12.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS14335 -3.4 -4.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS03585 -3.4 -15.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS03185 -3.4 -4.9 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS15620 -3.3 -4.7 cobyric acid synthase CobQ compare
SGL_RS15560 -3.3 -4.9 dethiobiotin synthase compare
SGL_RS00225 -3.3 -20.6 glycosyltransferase compare
SGL_RS03790 -3.3 -5.0 GTPase ObgE compare
SGL_RS10775 -3.3 -9.8 DUF3326 domain-containing protein compare
SGL_RS12755 -3.2 -14.1 IMS domain-containing protein compare
SGL_RS11025 -3.2 -10.1 oxidoreductase compare
SGL_RS13535 -3.2 -4.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS18215 -3.2 -9.7 pentapeptide repeat-containing protein compare
SGL_RS03380 -3.2 -14.8 sulfite reductase, ferredoxin dependent compare
SGL_RS11985 -3.2 -2.7 LysR family transcriptional regulator compare
SGL_RS09890 -3.2 -5.0 DUF3007 family protein compare
SGL_RS16735 -3.1 -4.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS04510 -3.1 -11.1 DUF561 domain-containing protein compare
SGL_RS11945 -3.1 -11.9 sirohydrochlorin chelatase compare
SGL_RS03970 -3.1 -5.6 thiamine phosphate synthase compare
SGL_RS15840 -3.1 -11.8 class A beta-lactamase compare
SGL_RS15370 -3.1 -4.1 DnaJ C-terminal domain-containing protein compare
SGL_RS02145 -3.0 -15.5 metallophosphoesterase compare
SGL_RS17860 -3.0 -6.5 Holliday junction resolvase RuvX compare
SGL_RS02795 -3.0 -7.0 flavin prenyltransferase UbiX compare
SGL_RS02375 -2.9 -9.3 DUF3086 domain-containing protein compare
SGL_RS17125 -2.9 -8.1 inositol monophosphatase family protein compare
SGL_RS09720 -2.9 -5.9 beta-ketoacyl-ACP synthase compare
SGL_RS19460 -2.9 -4.6 hypothetical protein compare
SGL_RS03545 -2.9 -9.6 glucose-1-phosphate cytidylyltransferase compare
SGL_RS17470 -2.8 -7.0 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS09430 -2.8 -17.5 leucyl aminopeptidase compare
SGL_RS15435 -2.8 -8.4 PD40 domain-containing protein compare
SGL_RS03190 -2.8 -3.0 universal stress protein compare
SGL_RS17340 -2.8 -1.4 quinolinate synthase NadA compare
SGL_RS03425 -2.8 -4.0 precorrin-3B C(17)-methyltransferase compare
SGL_RS16950 -2.7 -12.3 phosphoketolase compare
SGL_RS06440 -2.7 -5.3 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS07660 -2.7 -4.9 ferredoxin family protein compare
SGL_RS08605 -2.7 -8.6 DUF3120 domain-containing protein compare
SGL_RS17740 -2.6 -14.3 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
SGL_RS03420 -2.6 -7.8 UbiD family decarboxylase compare
SGL_RS02580 -2.6 -2.7 DUF1818 family protein compare
SGL_RS13910 -2.5 -7.3 phasin family protein compare
SGL_RS06755 -2.5 -7.7 bacterioferritin-associated ferredoxin compare
SGL_RS00320 -2.5 -4.2 helix-turn-helix transcriptional regulator compare
SGL_RS08875 -2.5 -4.3 potassium-transporting ATPase subunit F compare
SGL_RS09715 -2.5 -13.8 pitrilysin family protein compare
SGL_RS14510 -2.4 -4.5 DUF3177 family protein compare
SGL_RS08115 -2.4 -8.7 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS04490 -2.4 -3.4 2TM domain-containing protein compare
SGL_RS13855 -2.3 -8.1 hypothetical protein compare
SGL_RS14860 -2.3 -4.5 8-amino-7-oxononanoate synthase compare
SGL_RS03060 -2.3 -5.7 phosphoadenosine phosphosulfate reductase compare
SGL_RS13685 -2.3 -11.9 ABC transporter ATP-binding protein compare
SGL_RS03130 -2.3 -7.6 HEAT repeat domain-containing protein compare
SGL_RS12920 -2.3 -3.2 hypothetical protein compare
SGL_RS14285 -2.3 -3.8 hypothetical protein compare
SGL_RS18325 -2.3 -8.8 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS13900 -2.3 -15.4 AI-2E family transporter compare
SGL_RS18180 -2.3 -5.3 ABC transporter permease compare
SGL_RS19475 -2.2 -1.6 hypothetical protein compare
SGL_RS08880 -2.2 -11.0 K(+)-transporting ATPase subunit C compare
SGL_RS02305 -2.2 -11.1 NAD-dependent malic enzyme compare
SGL_RS07935 -2.2 -3.3 hypothetical protein compare
SGL_RS13770 -2.1 -2.3 DUF3082 domain-containing protein compare
SGL_RS17380 -2.1 -15.6 glutamate synthase large subunit compare
SGL_RS09820 -2.1 -3.4 ribosome maturation factor RimM compare
SGL_RS14585 -2.1 -3.1 TolB family protein compare
SGL_RS10305 -2.1 -9.9 PIN/TRAM domain-containing protein compare
SGL_RS16545 -2.1 -12.0 LdpA C-terminal domain-containing domain compare
SGL_RS12235 -2.1 -4.0 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS13905 -2.1 -5.9 hypothetical protein compare
SGL_RS08870 -2.1 -15.7 potassium-transporting ATPase subunit KdpB compare
SGL_RS00255 -2.0 -13.0 glycosyltransferase family 2 protein compare
SGL_RS04775 -2.0 -5.9 alpha/beta hydrolase compare
SGL_RS08865 -2.0 -15.7 potassium-transporting ATPase subunit KdpA compare
SGL_RS05560 -2.0 -5.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS00830 -1.9 -5.1 hypothetical protein compare
SGL_RS15700 -1.9 -10.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS04230 -1.9 -4.4 exonuclease subunit SbcC compare
SGL_RS20080 -1.9 -2.4 DUF4335 domain-containing protein compare
SGL_RS05210 -1.9 -6.9 SLBB domain-containing protein compare
SGL_RS15845 -1.9 -11.5 polyphosphate kinase 1 compare
SGL_RS09160 -1.9 -3.1 thioredoxin family protein compare
SGL_RS04390 -1.8 -3.9 DUF433 domain-containing protein compare
SGL_RS08855 -1.8 -11.3 response regulator transcription factor compare
SGL_RS10065 -1.8 -11.2 four-carbon acid sugar kinase family protein compare
SGL_RS13495 -1.8 -9.7 AarF/ABC1/UbiB kinase family protein compare
SGL_RS06355 -1.8 -3.2 carbon dioxide-concentrating mechanism protein CcmK compare
SGL_RS11035 -1.8 -2.6 LapA family protein compare
SGL_RS07675 -1.8 -5.2 HpsJ family protein compare
SGL_RS12340 -1.8 -11.2 hypothetical protein compare
SGL_RS15655 -1.7 -12.1 asparaginase compare
SGL_RS15490 -1.7 -8.2 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS15500 -1.7 -12.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in light_bubbling experiments