Experiment set2S499 for Synechocystis sp000284455 PCC 6803

Compare to:

L/D cycles short day

200 most important genes:

  gene name fitness t score description  
SGL_RS12870 -7.9 -5.5 YqeG family HAD IIIA-type phosphatase compare
SGL_RS07200 -6.4 -4.4 LCP family protein compare
SGL_RS12985 -5.7 -3.9 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase compare
SGL_RS05880 -5.5 -6.4 sugar ABC transporter substrate-binding protein compare
SGL_RS08790 -5.3 -5.1 carbohydrate ABC transporter permease compare
SGL_RS17125 -5.2 -5.8 inositol monophosphatase family protein compare
SGL_RS05980 -5.2 -6.1 hypothetical protein compare
SGL_RS17650 -5.0 -5.9 hypothetical protein compare
SGL_RS06430 -5.0 -4.4 glycosyltransferase family 2 protein compare
SGL_RS12490 -4.9 -9.7 glutamate--cysteine ligase compare
SGL_RS14430 -4.8 -9.0 cobalt ECF transporter T component CbiQ compare
SGL_RS03840 -4.7 -4.5 adenylyl-sulfate kinase compare
SGL_RS12235 -4.7 -5.8 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS16100 -4.7 -14.8 heavy metal translocating P-type ATPase compare
SGL_RS14445 -4.6 -7.6 hypothetical protein compare
SGL_RS03540 -4.6 -16.7 ABC transporter ATP-binding protein compare
SGL_RS17495 -4.6 -9.5 peptidoglycan editing factor PgeF compare
SGL_RS03520 -4.6 -6.5 ABC transporter permease compare
SGL_RS03970 -4.4 -4.3 thiamine phosphate synthase compare
SGL_RS12030 -4.4 -10.6 extracellular solute-binding protein compare
SGL_RS02460 -4.3 -5.3 phosphate signaling complex protein PhoU compare
SGL_RS11000 -4.3 -7.7 sulfate adenylyltransferase compare
SGL_RS06675 -4.3 -7.5 ABC transporter ATP-binding protein compare
SGL_RS09395 -4.3 -5.7 aldo/keto reductase compare
SGL_RS13510 -4.2 -9.4 transglycosylase domain-containing protein compare
SGL_RS05560 -4.2 -8.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS09720 -4.2 -6.3 beta-ketoacyl-ACP synthase compare
SGL_RS12770 -4.1 -4.6 uroporphyrinogen-III C-methyltransferase compare
SGL_RS12755 -4.1 -13.9 IMS domain-containing protein compare
SGL_RS14435 -4.1 -3.4 cobalt transporter CbiM compare
SGL_RS17305 -4.0 -5.8 pyrroline-5-carboxylate reductase compare
SGL_RS17520 -4.0 -9.1 DUF3352 domain-containing protein compare
SGL_RS14860 -4.0 -6.5 8-amino-7-oxononanoate synthase compare
SGL_RS14190 -4.0 -12.9 phosphate ABC transporter permease PstA compare
SGL_RS14195 -4.0 -10.1 phosphate ABC transporter permease subunit PstC compare
SGL_RS06020 -3.9 -7.7 sugar ABC transporter permease compare
SGL_RS12400 -3.9 -6.8 lysophospholipid acyltransferase family protein compare
SGL_RS14425 -3.9 -6.3 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS14180 -3.8 -14.3 phosphate ABC transporter ATP-binding protein PstB compare
SGL_RS08275 -3.8 -4.9 tetratricopeptide repeat protein compare
SGL_RS05435 -3.8 -2.6 heavy metal translocating P-type ATPase compare
SGL_RS03365 -3.7 -4.4 Ycf66 family protein compare
SGL_RS08175 -3.7 -4.9 serine hydrolase compare
SGL_RS15560 -3.6 -5.0 dethiobiotin synthase compare
SGL_RS13370 -3.5 -7.9 exonuclease SbcCD subunit D compare
SGL_RS10320 -3.5 -3.9 ribosome biogenesis GTPase Der compare
SGL_RS14920 -3.5 -4.6 cation:proton antiporter compare
SGL_RS13870 -3.4 -5.7 rRNA maturation RNase YbeY compare
SGL_RS14185 -3.3 -4.7 phosphate ABC transporter ATP-binding protein PstB compare
SGL_RS05440 -3.3 -4.3 ACP S-malonyltransferase compare
SGL_RS16735 -3.3 -4.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS06485 -3.3 -4.1 anti-sigma factor compare
SGL_RS08495 -3.2 -15.7 DUF3370 domain-containing protein compare
SGL_RS04360 -3.2 -14.7 5-formyltetrahydrofolate cyclo-ligase compare
SGL_RS12575 -3.1 -7.0 riboflavin synthase compare
SGL_RS03550 -3.1 -18.6 CDP-glucose 4,6-dehydratase compare
SGL_RS03790 -3.1 -4.8 GTPase ObgE compare
SGL_RS03625 -3.1 -10.8 glycosyltransferase family 1 protein compare
SGL_RS15620 -3.1 -4.5 cobyric acid synthase CobQ compare
SGL_RS06130 -3.1 -5.9 anti-sigma regulatory factor compare
SGL_RS16880 -3.0 -5.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS13055 -2.9 -5.1 protein translocase subunit SecF compare
SGL_RS08080 -2.9 -7.0 Fur family transcriptional regulator compare
SGL_RS08710 -2.9 -6.1 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS07840 -2.9 -4.8 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS12545 -2.8 -3.5 GTPase Era compare
SGL_RS11510 -2.8 -4.5 dihydroneopterin aldolase compare
SGL_RS12585 -2.8 -6.7 ABC transporter permease subunit compare
SGL_RS16940 -2.8 -4.5 dephospho-CoA kinase compare
SGL_RS16770 -2.7 -11.1 LptF/LptG family permease compare
SGL_RS08535 -2.7 -4.6 NIL domain-containing protein compare
SGL_RS04490 -2.7 -4.3 2TM domain-containing protein compare
SGL_RS15425 -2.7 -8.7 cobalamin biosynthesis protein CobW compare
SGL_RS10890 -2.7 -13.8 LD-carboxypeptidase compare
SGL_RS09820 -2.6 -5.6 ribosome maturation factor RimM compare
SGL_RS15045 -2.6 -14.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS09385 -2.5 -4.2 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS03560 -2.5 -11.7 class I SAM-dependent methyltransferase compare
SGL_RS03585 -2.5 -13.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS14335 -2.4 -4.0 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS13910 -2.4 -6.6 phasin family protein compare
SGL_RS07565 -2.3 -5.3 hypothetical protein compare
SGL_RS07605 -2.3 -6.0 HEAT repeat domain-containing protein compare
SGL_RS02145 -2.3 -14.8 metallophosphoesterase compare
SGL_RS03380 -2.3 -9.7 sulfite reductase, ferredoxin dependent compare
SGL_RS02665 -2.3 -3.5 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS02580 -2.3 -2.7 DUF1818 family protein compare
SGL_RS15530 -2.3 -3.2 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS04720 -2.3 -4.3 iron uptake porin compare
SGL_RS05470 -2.3 -4.1 dihydropteroate synthase compare
SGL_RS03590 -2.3 -6.8 ATP-grasp domain-containing protein compare
SGL_RS04230 -2.3 -4.2 exonuclease subunit SbcC compare
SGL_RS17560 -2.2 -7.0 6-phosphogluconolactonase compare
SGL_RS09845 -2.2 -6.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
SGL_RS13555 -2.2 -7.7 aldehyde oxygenase (deformylating) compare
SGL_RS02375 -2.2 -11.1 DUF3086 domain-containing protein compare
SGL_RS19585 -2.2 -5.2 hypothetical protein compare
SGL_RS03250 -2.2 -6.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS03060 -2.2 -6.1 phosphoadenosine phosphosulfate reductase compare
SGL_RS02220 -2.2 -6.0 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS13535 -2.2 -4.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS07870 -2.2 -3.5 Ycf51 family protein compare
SGL_RS18230 -2.1 -8.0 DUF2993 domain-containing protein compare
SGL_RS11135 -2.1 -3.2 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS03950 -2.1 -11.2 homocysteine biosynthesis protein compare
SGL_RS03185 -2.1 -4.5 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS03555 -2.1 -12.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS13550 -2.1 -3.5 long-chain acyl-[acyl-carrier-protein] reductase compare
SGL_RS12540 -2.1 -8.3 RNA polymerase sigma factor, RpoD/SigA family compare
SGL_RS03425 -2.1 -3.5 precorrin-3B C(17)-methyltransferase compare
SGL_RS18300 -2.0 -6.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS15845 -2.0 -10.0 polyphosphate kinase 1 compare
SGL_RS10130 -2.0 -12.4 fatty acid desaturase compare
SGL_RS14505 -2.0 -8.0 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS16670 -2.0 -14.1 DUF5942 domain-containing protein compare
SGL_RS05240 -1.9 -3.6 phycobilisome linker polypeptide compare
SGL_RS08765 -1.9 -2.3 2-phosphosulfolactate phosphatase family protein compare
SGL_RS04085 -1.9 -3.0 YlqD family protein compare
SGL_RS17175 -1.9 -3.4 allophycocyanin subunit beta compare
SGL_RS03545 -1.8 -5.2 glucose-1-phosphate cytidylyltransferase compare
SGL_RS15840 -1.8 -12.7 class A beta-lactamase compare
SGL_RS14105 -1.8 -4.2 2-succinylbenzoate--CoA ligase compare
SGL_RS13465 -1.8 -8.9 class II fumarate hydratase compare
SGL_RS13175 -1.8 -5.1 GerMN domain-containing protein compare
SGL_RS02260 -1.8 -3.6 HEAT repeat domain-containing protein compare
SGL_RS11305 -1.8 -5.1 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS14930 -1.8 -9.9 type I methionyl aminopeptidase compare
SGL_RS09160 -1.8 -3.0 thioredoxin family protein compare
SGL_RS10480 -1.8 -12.0 metallophosphoesterase family protein compare
SGL_RS03430 -1.8 -5.3 DUF4335 domain-containing protein compare
SGL_RS08155 -1.8 -3.6 Spy/CpxP family protein refolding chaperone compare
SGL_RS10305 -1.7 -8.2 PIN/TRAM domain-containing protein compare
SGL_RS13195 -1.7 -6.9 Ig-like domain-containing protein compare
SGL_RS17405 -1.7 -9.7 L-2-hydroxyglutarate oxidase compare
SGL_RS05210 -1.7 -7.5 SLBB domain-containing protein compare
SGL_RS14045 -1.7 -4.9 hypothetical protein compare
SGL_RS02795 -1.7 -6.7 flavin prenyltransferase UbiX compare
SGL_RS04735 -1.7 -4.2 hypothetical protein compare
SGL_RS11760 -1.6 -7.9 radical SAM protein compare
SGL_RS03775 -1.6 -5.5 membrane protein compare
SGL_RS06920 -1.6 -7.2 serine/threonine protein kinase compare
SGL_RS09305 -1.6 -5.7 adenosyl-hopene transferase HpnH compare
SGL_RS10775 -1.6 -9.2 DUF3326 domain-containing protein compare
SGL_RS17470 -1.6 -4.8 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS09295 -1.6 -12.0 alpha/beta hydrolase compare
SGL_RS17340 -1.6 -2.0 quinolinate synthase NadA compare
SGL_RS11325 -1.6 -5.4 pitrilysin family protein compare
SGL_RS13495 -1.6 -8.2 AarF/ABC1/UbiB kinase family protein compare
SGL_RS08115 -1.6 -4.3 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS18320 -1.6 -10.7 serine/threonine-protein kinase compare
SGL_RS04510 -1.6 -5.5 DUF561 domain-containing protein compare
SGL_RS04580 -1.5 -2.6 DNA topoisomerase (ATP-hydrolyzing) subunit A compare
SGL_RS02280 -1.5 -3.1 Rne/Rng family ribonuclease compare
SGL_RS03420 -1.5 -7.3 UbiD family decarboxylase compare
SGL_RS02515 -1.5 -4.3 M56 family metallopeptidase compare
SGL_RS15370 -1.5 -4.4 DnaJ C-terminal domain-containing protein compare
SGL_RS15870 -1.5 -6.5 septum site-determining protein MinC compare
SGL_RS05320 -1.4 -7.9 PBP1A family penicillin-binding protein compare
SGL_RS16360 -1.4 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS17270 -1.4 -2.3 hypothetical protein compare
SGL_RS11495 -1.4 -2.2 Ig-like domain-containing protein compare
SGL_RS03505 -1.4 -9.8 exopolysaccharide transport family protein compare
SGL_RS04390 -1.4 -3.6 DUF433 domain-containing protein compare
SGL_RS16950 -1.4 -8.8 phosphoketolase compare
SGL_RS00830 -1.4 -3.0 hypothetical protein compare
SGL_RS16545 -1.4 -8.1 LdpA C-terminal domain-containing domain compare
SGL_RS13490 -1.4 -7.2 aspartate aminotransferase compare
SGL_RS05235 -1.4 -3.9 phycobilisome linker polypeptide compare
SGL_RS03675 -1.3 -3.5 hypothetical protein compare
SGL_RS18180 -1.3 -3.6 ABC transporter permease compare
SGL_RS06460 -1.3 -4.0 fatty acid desaturase compare
SGL_RS14025 -1.3 -8.5 gamma-glutamyl-phosphate reductase compare
SGL_RS09715 -1.3 -5.9 pitrilysin family protein compare
SGL_RS14905 -1.3 -3.9 30S ribosomal protein PSRP-3 compare
SGL_RS15865 -1.3 -3.0 septum site-determining protein MinD compare
SGL_RS04820 -1.3 -1.4 LysR family transcriptional regulator compare
SGL_RS11955 -1.3 -4.9 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS16860 -1.3 -5.8 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS06595 -1.3 -5.1 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS04775 -1.2 -4.1 alpha/beta hydrolase compare
SGL_RS11835 -1.2 -2.4 transcription antitermination factor NusB compare
SGL_RS06355 -1.2 -2.6 carbon dioxide-concentrating mechanism protein CcmK compare
SGL_RS04155 -1.2 -3.8 reverse transcriptase domain-containing protein compare
SGL_RS11550 -1.2 -2.6 hypothetical protein compare
SGL_RS00825 -1.2 -5.5 hypothetical protein compare
SGL_RS15700 -1.2 -5.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS18170 -1.2 -3.3 PspA/IM30 family protein compare
SGL_RS12930 -1.2 -2.3 DUF1257 domain-containing protein compare
SGL_RS04525 -1.2 -2.0 photosynthesis system II assembly factor Ycf48 compare
SGL_RS08160 -1.2 -3.8 hypothetical protein compare
SGL_RS02825 -1.2 -7.2 translational GTPase TypA compare
SGL_RS12925 -1.2 -4.4 AAA family ATPase compare
SGL_RS10160 -1.1 -5.9 B12-binding domain-containing radical SAM protein compare
SGL_RS07105 -1.1 -3.5 precorrin-6Y C5,15-methyltransferase subunit CbiT compare
SGL_RS03000 -1.1 -3.4 spore maturation protein compare
SGL_RS04660 -1.1 -3.9 phycobilisome rod-core linker polypeptide compare
SGL_RS07935 -1.1 -3.0 hypothetical protein compare
SGL_RS13855 -1.1 -4.1 hypothetical protein compare
SGL_RS09695 -1.1 -4.4 hybrid sensor histidine kinase/response regulator compare
SGL_RS10245 -1.1 -5.6 glycoside hydrolase family protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in light_bubbling experiments