Experiment set2S498 for Synechocystis sp000284455 PCC 6803
high light; bubbling
Group: light_bubblingMedia: BG11C
Culturing: Synechocystis_PCC6803_ML3, vertical flask bubling 1 % CO2, at 30 (C), shaken=air bubling
By: Luis on 5/12/25
Media components: 17.6 mM Sodium nitrate, 0.2 mM Potassium phosphate dibasic, 0.3 mM Magnesium Sulfate Heptahydrate, 0.24 mM Calcium chloride dihydrate, 28.5 uM Citric Acid, 0.006 g/L Ferric ammonium citrate, 2.4 uM EDTA (disodium salt), 0.2 mM Sodium bicarbonate, Trace metal mix A5 (0.00286 g/L Boric Acid, 0.00181 g/L Manganese (II) chloride tetrahydrate, 0.000222 g/L Zinc sulfate heptahydrate, 0.00039 g/L Sodium Molybdate Dihydrate, 7.9e-05 g/L Copper (II) sulfate pentahydrate, 0.0494 mg/L Cobalt(II) nitrate hexahydrate)
Specific Phenotypes
For 16 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA-replication | 1 |
| DNA repair, UvrABC system | 1 |
| Macromolecular synthesis operon | 1 |
| Peptidoglycan Biosynthesis | 1 |
| Photosystem II | 1 |
| Ubiquinone Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ubiquinone and menaquinone biosynthesis
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Nucleotide sugars metabolism
- Lipopolysaccharide biosynthesis
- Peptidoglycan biosynthesis
- Naphthalene and anthracene degradation
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of siderophore group nonribosomal peptides
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: