Experiment set2S481 for Enterobacter sp. TBS_079

Compare to:

Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

200 most important genes:

  gene name fitness t score description  
MPMX20_01566 -6.6 -6.4 Phosphoserine aminotransferase compare
MPMX20_01370 -6.5 -4.5 Peptidoglycan-associated lipoprotein compare
MPMX20_03443 -6.4 -4.4 Anti-sigma-E factor RseA compare
MPMX20_02696 -6.2 -6.0 Murein tetrapeptide carboxypeptidase compare
MPMX20_01366 -5.9 -4.1 Tol-Pal system protein TolQ compare
MPMX20_03385 -5.8 -5.6 hypothetical protein compare
MPMX20_01367 -5.6 -3.9 Tol-Pal system protein TolR compare
MPMX20_01369 -5.6 -3.9 Tol-Pal system protein TolB compare
MPMX20_01368 -5.5 -3.8 hypothetical protein compare
MPMX20_04768 -5.4 -3.8 hypothetical protein compare
MPMX20_01950 -5.4 -3.8 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_01353 -5.3 -3.7 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_03390 -5.2 -7.1 Outer membrane protein assembly factor BamB compare
MPMX20_00693 -5.1 -6.1 Phosphoserine phosphatase compare
MPMX20_03435 -5.1 -3.5 Pyridoxine 5'-phosphate synthase compare
MPMX20_01021 -5.0 -3.5 Cytochrome bo(3) ubiquinol oxidase subunit 3 compare
MPMX20_03354 -5.0 -4.8 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_03264 -4.9 -4.8 Chorismate synthase compare
MPMX20_03756 -4.9 -3.3 FAD assembly factor SdhE compare
MPMX20_03019 -4.8 -12.6 hypothetical protein compare
MPMX20_03267 -4.8 -3.3 Phosphohistidine phosphatase SixA compare
MPMX20_01322 -4.8 -4.7 N-acetylglucosamine repressor compare
MPMX20_03154 -4.8 -11.2 Inner membrane protein YejM compare
MPMX20_03121 -4.8 -8.0 HTH-type transcriptional regulator GalS compare
MPMX20_01156 -4.8 -3.3 hypothetical protein compare
MPMX20_01570 -4.8 -3.3 Integration host factor subunit beta compare
MPMX20_01551 -4.8 -4.7 Leucine-responsive regulatory protein compare
MPMX20_01351 -4.7 -3.3 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_00748 -4.7 -6.4 4-hydroxythreonine-4-phosphate dehydrogenase compare
MPMX20_01019 -4.6 -4.5 Protoheme IX farnesyltransferase compare
MPMX20_03481 -4.5 -10.4 Inner membrane protein YpjD compare
MPMX20_02591 -4.5 -4.4 DNA-binding protein H-NS compare
MPMX20_01349 -4.5 -3.1 Citrate synthase compare
MPMX20_03986 -4.4 -4.3 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_00976 -4.4 -4.3 Pyrroline-5-carboxylate reductase compare
MPMX20_01354 -4.4 -3.0 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_01022 -4.4 -7.9 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
MPMX20_03247 -4.4 -4.2 Amidophosphoribosyltransferase compare
MPMX20_01352 -4.3 -7.8 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_01023 -4.3 -11.8 Cytochrome bo(3) ubiquinol oxidase subunit 2 compare
MPMX20_00225 -4.3 -4.2 Phosphoribosylamine--glycine ligase compare
MPMX20_01097 -4.3 -4.2 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_00720 -4.3 -2.6 Chaperone protein DnaK compare
MPMX20_03519 -4.3 -10.6 hypothetical protein compare
MPMX20_02767 -4.2 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_01901 -4.2 -2.9 Integration host factor subunit alpha compare
MPMX20_00071 -4.2 -10.5 hypothetical protein compare
MPMX20_01098 -4.2 -2.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_03208 -4.1 -4.0 NADH-quinone oxidoreductase subunit L compare
MPMX20_03153 -4.1 -2.5 hypothetical protein compare
MPMX20_03426 -4.1 -7.9 Phosphoribosylformylglycinamidine synthase compare
MPMX20_00773 -4.1 -8.3 Catabolite repressor/activator compare
MPMX20_03214 -4.1 -2.8 NADH-quinone oxidoreductase subunit F compare
MPMX20_03018 -4.1 -4.0 hypothetical protein compare
MPMX20_03213 -4.1 -2.8 NADH-quinone oxidoreductase subunit G compare
MPMX20_03216 -4.1 -4.8 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_01356 -4.0 -9.7 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_04140 -4.0 -5.5 Malate dehydrogenase compare
MPMX20_03211 -4.0 -2.8 NADH-quinone oxidoreductase subunit I compare
MPMX20_00712 -4.0 -11.8 Threonine synthase compare
MPMX20_04443 -4.0 -2.8 Sec-independent protein translocase protein TatB compare
MPMX20_01567 -4.0 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_01357 -4.0 -6.6 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_04162 -4.0 -2.7 3-dehydroquinate dehydratase compare
MPMX20_03209 -3.9 -2.7 NADH-quinone oxidoreductase subunit K compare
MPMX20_03206 -3.9 -3.8 NADH-quinone oxidoreductase subunit N compare
MPMX20_03218 -3.9 -2.7 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_03020 -3.9 -8.6 hypothetical protein compare
MPMX20_04110 -3.8 -3.7 Nitrogen regulatory protein compare
MPMX20_04189 -3.8 -2.6 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_00831 -3.8 -2.6 RNA polymerase-binding transcription factor DksA compare
MPMX20_03215 -3.8 -2.6 NADH-quinone oxidoreductase subunit E compare
MPMX20_02766 -3.8 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_02646 -3.7 -2.8 hypothetical protein compare
MPMX20_01350 -3.7 -4.7 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_01355 -3.7 -1.4 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_03210 -3.7 -5.0 NADH-quinone oxidoreductase subunit J compare
MPMX20_04489 -3.7 -19.5 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_02027 -3.6 -11.6 Inner membrane protein YdgC compare
MPMX20_03090 -3.6 -1.9 Methionine--tRNA ligase compare
MPMX20_04442 -3.6 -3.5 Sec-independent protein translocase protein TatC compare
MPMX20_03338 -3.6 -2.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_01083 -3.6 -9.2 hypothetical protein compare
MPMX20_00544 -3.6 -2.5 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_03255 -3.6 -9.2 Erythronate-4-phosphate dehydrogenase compare
MPMX20_03468 -3.6 -9.4 T-protein compare
MPMX20_03212 -3.5 -3.4 NADH-quinone oxidoreductase subunit H compare
MPMX20_04483 -3.5 -2.4 Lipid III flippase compare
MPMX20_03207 -3.5 -3.4 NADH-quinone oxidoreductase subunit M compare
MPMX20_00226 -3.5 -2.4 Bifunctional purine biosynthesis protein PurH compare
MPMX20_00073 -3.5 -11.8 HTH-type transcriptional regulator MlrA compare
MPMX20_01334 -3.5 -11.3 Phosphoglucomutase compare
MPMX20_00258 -3.5 -2.4 Diacylglycerol kinase compare
MPMX20_03007 -3.5 -9.0 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_02768 -3.4 -3.3 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_00740 -3.4 -2.4 Carbamoyl-phosphate synthase large chain compare
MPMX20_03022 -3.4 -2.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_03771 -3.4 -12.7 D-3-phosphoglycerate dehydrogenase compare
MPMX20_02203 -3.4 -4.3 hypothetical protein compare
MPMX20_04668 -3.4 -4.5 hypothetical protein compare
MPMX20_03132 -3.3 -8.5 Tagatose-6-phosphate kinase compare
MPMX20_02701 -3.3 -2.3 Fatty acid metabolism regulator protein compare
MPMX20_00106 -3.3 -3.2 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_00133 -3.3 -3.2 Mannitol operon repressor compare
MPMX20_04639 -3.3 -2.1 Phosphate-binding protein PstS compare
MPMX20_04499 -3.3 -14.1 Dihydroxy-acid dehydratase compare
MPMX20_03248 -3.2 -6.8 Colicin V production protein compare
MPMX20_03753 -3.2 -3.1 Tyrosine recombinase XerD compare
MPMX20_02734 -3.2 -10.7 Transcriptional regulator KdgR compare
MPMX20_02494 -3.2 -3.1 Orotidine 5'-phosphate decarboxylase compare
MPMX20_04496 -3.2 -7.9 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_03580 -3.2 -4.8 Protein RecA compare
MPMX20_02116 -3.2 -2.5 hypothetical protein compare
MPMX20_03805 -3.2 -13.9 Glutathione synthetase compare
MPMX20_01030 -3.1 -3.7 Lon protease compare
MPMX20_02549 -3.1 -5.8 hypothetical protein compare
MPMX20_01596 -3.1 -5.2 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_04079 -3.1 -3.2 Protein-export membrane protein SecG compare
MPMX20_03568 -3.1 -8.0 Glutamate--cysteine ligase compare
MPMX20_02216 -3.1 -4.7 hypothetical protein compare
MPMX20_02593 -3.1 -13.7 Regulator of RpoS compare
MPMX20_04127 -3.0 -14.2 Glutamate synthase [NADPH] small chain compare
MPMX20_00102 -3.0 -2.1 hypothetical protein compare
MPMX20_00739 -3.0 -2.1 Carbamoyl-phosphate synthase small chain compare
MPMX20_03310 -3.0 -2.1 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04077 -3.0 -11.2 Argininosuccinate synthase compare
MPMX20_03010 -3.0 -2.1 UDP-glucose 4-epimerase compare
MPMX20_00745 -3.0 -2.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_01362 -3.0 -2.9 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_04520 -3.0 -10.5 Argininosuccinate lyase compare
MPMX20_04038 -3.0 -5.7 Glucitol operon repressor compare
MPMX20_03006 -3.0 -8.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_02737 -2.9 -15.4 Tail-specific protease compare
MPMX20_03376 -2.9 -7.0 HTH-type transcriptional regulator MurR compare
MPMX20_03217 -2.9 -4.8 NADH-quinone oxidoreductase subunit B compare
MPMX20_00084 -2.9 -11.9 ATP-dependent DNA helicase RecG compare
MPMX20_00711 -2.9 -12.7 Homoserine kinase compare
MPMX20_03012 -2.9 -9.4 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_04532 -2.9 -2.8 Met repressor compare
MPMX20_01382 -2.9 -2.0 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_00388 -2.9 -1.5 hypothetical protein compare
MPMX20_03882 -2.9 -9.5 Outer membrane protein TolC compare
MPMX20_00556 -2.9 -9.0 Ornithine carbamoyltransferase subunit F compare
MPMX20_04523 -2.8 -7.9 Acetylornithine deacetylase compare
MPMX20_04276 -2.8 -2.7 DNA adenine methylase compare
MPMX20_01741 -2.8 -3.3 Dihydroorotase compare
MPMX20_01181 -2.8 -6.9 Putative transferase YhbX compare
MPMX20_03509 -2.8 -2.0 hypothetical protein compare
MPMX20_02457 -2.8 -19.9 Ribose operon repressor compare
MPMX20_00570 -2.8 -11.0 putative BsuMI modification methylase subunit YdiO compare
MPMX20_04126 -2.7 -16.6 Glutamate synthase [NADPH] large chain compare
MPMX20_02869 -2.7 -21.1 hypothetical protein compare
MPMX20_04375 -2.7 -5.8 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_03641 -2.7 -8.3 Phosphoadenosine phosphosulfate reductase compare
MPMX20_01942 -2.7 -7.5 HTH-type transcriptional repressor BluR compare
MPMX20_00749 -2.7 -5.4 Chaperone SurA compare
MPMX20_00241 -2.7 -11.8 Glucose-6-phosphate isomerase compare
MPMX20_03013 -2.7 -5.4 dTDP-glucose 4,6-dehydratase compare
MPMX20_02204 -2.6 -5.8 hypothetical protein compare
MPMX20_00110 -2.6 -16.3 hypothetical protein compare
MPMX20_03447 -2.6 -8.4 ATP-dependent RNA helicase SrmB compare
MPMX20_00812 -2.6 -5.5 Aconitate hydratase B compare
MPMX20_00197 -2.6 -1.7 tRNA-Tyr compare
MPMX20_04521 -2.6 -8.4 Acetylglutamate kinase compare
MPMX20_04465 -2.6 -3.1 Tyrosine recombinase XerC compare
MPMX20_01020 -2.6 -1.9 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
MPMX20_03479 -2.6 -2.4 30S ribosomal protein S16 compare
MPMX20_04522 -2.6 -8.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_02997 -2.6 -9.9 Exodeoxyribonuclease I compare
MPMX20_01765 -2.6 -5.3 Ribonuclease E compare
MPMX20_01386 -2.6 -7.6 UDP-glucose 4-epimerase compare
MPMX20_04278 -2.5 -3.8 3-dehydroquinate synthase compare
MPMX20_04626 -2.5 -1.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_03490 -2.5 -6.4 SsrA-binding protein compare
MPMX20_03681 -2.5 -10.8 Amino-acid acetyltransferase compare
MPMX20_01323 -2.5 -9.7 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX20_00216 -2.5 -8.5 Thiamine-phosphate synthase compare
MPMX20_03767 -2.5 -5.8 Xaa-Pro aminopeptidase compare
MPMX20_00087 -2.4 -3.6 DNA-directed RNA polymerase subunit omega compare
MPMX20_00577 -2.4 -8.9 hypothetical protein compare
MPMX20_03407 -2.4 -2.3 Chaperone protein HscA compare
MPMX20_01361 -2.4 -4.9 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_04552 -2.4 -5.9 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_02344 -2.4 -1.3 hypothetical protein compare
MPMX20_00105 -2.4 -8.7 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_04529 -2.4 -7.3 5,10-methylenetetrahydrofolate reductase compare
MPMX20_03004 -2.4 -8.6 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_00291 -2.4 -11.7 Acetyl-coenzyme A synthetase compare
MPMX20_01984 -2.4 -2.3 Ribonuclease T compare
MPMX20_03636 -2.4 -4.6 Adenylyl-sulfate kinase compare
MPMX20_03076 -2.4 -9.5 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
MPMX20_00775 -2.3 -3.4 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_02635 -2.3 -3.1 Release factor glutamine methyltransferase compare
MPMX20_00134 -2.3 -6.1 Mannitol-1-phosphate 5-dehydrogenase compare
MPMX20_00109 -2.3 -15.5 hypothetical protein compare
MPMX20_01408 -2.3 -11.4 UvrABC system protein B compare
MPMX20_00107 -2.3 -7.4 Lipopolysaccharide core heptosyltransferase RfaQ compare
MPMX20_04451 -2.3 -13.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
MPMX20_04491 -2.3 -4.1 Thioredoxin 1 compare
MPMX20_03239 -2.3 -6.2 Epimerase family protein compare


Specific Phenotypes

For 111 genes in this experiment

For in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 in Enterobacter sp. TBS_079

For in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 across organisms