Experiment set2S479 for Rhodopseudomonas palustris CGA009

Compare to:

PM with argon and Sodium butyrate 10 mM and Sodium bicarbonate 10 mM

200 most important genes:

  gene name fitness t score description  
TX73_024775 -3.6 -15.5 O-succinylhomoserine sulfhydrylase compare
TX73_019145 -3.4 -11.6 prephenate dehydratase compare
TX73_018135 -3.3 -4.3 DUF4169 family protein compare
TX73_024230 -2.9 -3.3 trehalose-phosphatase compare
TX73_021975 -2.6 -6.1 CBS domain-containing protein compare
TX73_005330 -2.5 -2.4 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_001320 -2.4 -15.7 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_022015 -2.3 -8.9 response regulator compare
TX73_019175 -2.3 -2.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_018875 -2.2 -7.4 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_018140 -2.2 -2.4 ribbon-helix-helix domain-containing protein compare
TX73_015855 -2.1 -3.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_019180 -2.1 -2.0 methionine synthase compare
TX73_017750 -2.1 -5.6 zinc-finger domain-containing protein compare
TX73_021105 -1.9 -7.1 Lrp/AsnC family transcriptional regulator compare
TX73_022760 -1.8 -2.4 metallophosphoesterase compare
TX73_024650 -1.7 -1.1 TlpA disulfide reductase family protein compare
TX73_005530 -1.7 -3.1 FAD-binding oxidoreductase compare
TX73_013955 -1.7 -7.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
TX73_009990 -1.5 -2.0 ATP-binding protein compare
TX73_000270 -1.5 -5.2 PTS IIA-like nitrogen regulatory protein PtsN compare
TX73_020625 -1.5 -4.2 NAD-dependent epimerase compare
TX73_013960 -1.5 -3.2 pyridoxine 5'-phosphate synthase compare
TX73_010270 -1.5 -1.9 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_009890 -1.4 -2.5 c-type cytochrome biogenesis protein CcmI compare
TX73_018540 -1.3 -10.3 phosphomethylpyrimidine synthase ThiC compare
TX73_002250 -1.3 -3.3 30S ribosomal protein S15 compare
TX73_000310 -1.3 -1.3 tRNA-Ala compare
TX73_012525 -1.3 -4.2 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_000395 -1.3 -2.1 nucleotidyltransferase family protein compare
TX73_011500 -1.2 -1.5 putative entry exclusion protein TrbK-alt compare
TX73_002045 -1.2 -2.3 phosphatase PAP2 family protein compare
TX73_007900 -1.2 -8.8 transcriptional regulator PpsR compare
TX73_009360 -1.2 -1.4 hypothetical protein compare
TX73_008350 -1.1 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
TX73_023355 -1.1 -4.1 hypothetical protein compare
TX73_016155 -1.1 -3.3 type I DNA topoisomerase compare
TX73_023110 -1.0 -2.6 pyridoxal-dependent decarboxylase compare
TX73_022005 -1.0 -5.8 PAS domain S-box protein compare
TX73_000345 -1.0 -0.9 integration host factor subunit beta compare
TX73_004430 -1.0 -4.9 metal ABC transporter permease compare
TX73_000335 -1.0 -1.3 30S ribosomal protein S1 compare
TX73_024675 -0.9 -1.0 FAD-binding protein compare
TX73_024670 -0.9 -3.8 3-hydroxybutyryl-CoA dehydrogenase compare
TX73_018930 -0.9 -1.9 sulfurtransferase TusA family protein compare
TX73_021000 -0.9 -5.1 NAD-dependent epimerase/dehydratase family protein compare
TX73_002990 -0.9 -3.0 transglycosylase domain-containing protein compare
TX73_020255 -0.9 -2.5 RNA polymerase-binding protein DksA compare
TX73_001000 -0.9 -7.2 cell division protein ZapE compare
TX73_016940 -0.8 -2.8 biopolymer transporter ExbD compare
TX73_023105 -0.8 -2.2 hypothetical protein compare
TX73_024745 -0.8 -2.8 hypothetical protein compare
TX73_018870 -0.8 -6.1 4-alpha-glucanotransferase compare
TX73_018590 -0.8 -1.5 hypothetical protein compare
TX73_013215 -0.8 -2.5 glycosyltransferase family 39 protein compare
TX73_001250 -0.8 -1.7 50S ribosomal protein L19 compare
TX73_021845 -0.8 -2.2 DUF2849 domain-containing protein compare
TX73_024540 -0.8 -2.7 hypothetical protein compare
TX73_016445 -0.7 -2.0 histone compare
TX73_004880 -0.7 -2.6 cell division protein ZapA compare
TX73_018880 -0.7 -5.2 maltose alpha-D-glucosyltransferase compare
TX73_001535 -0.7 -6.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
TX73_020750 -0.7 -2.6 30S ribosomal protein S21 compare
TX73_014645 -0.7 -5.9 phytoene/squalene synthase family protein compare
TX73_024565 -0.7 -5.7 glycogen/starch/alpha-glucan phosphorylase compare
TX73_006700 -0.7 -3.4 tRNA 2-thiouridine(34) synthase MnmA compare
TX73_017130 -0.7 -1.5 hypothetical protein compare
TX73_018250 -0.7 -1.4 UDP-3-O-acyl-N-acetylglucosamine deacetylase compare
TX73_004435 -0.7 -3.7 metal ABC transporter substrate-binding protein compare
TX73_001655 -0.7 -3.9 hypothetical protein compare
TX73_017895 -0.7 -1.6 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
TX73_001735 -0.6 -0.6 molecular chaperone DnaJ compare
TX73_008315 -0.6 -2.1 DUF5413 family protein compare
TX73_017785 -0.6 -1.7 hypothetical protein compare
TX73_005435 -0.6 -3.0 hypothetical protein compare
TX73_024050 -0.6 -3.0 4Fe-4S binding protein compare
TX73_004665 -0.6 -4.4 N-formylglutamate amidohydrolase compare
TX73_001530 -0.6 -5.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
TX73_013145 -0.6 -2.4 pentapeptide MXKDX repeat protein compare
TX73_003225 -0.6 -1.9 tRNA pseudouridine(38-40) synthase TruA compare
TX73_001665 -0.6 -5.0 HTH-type quorum sensing-dependent transcriptional regulator RpaR compare
TX73_015830 -0.6 -4.6 leucyl aminopeptidase compare
TX73_007950 -0.6 -2.8 BCD family MFS transporter compare
TX73_000815 -0.6 -1.8 50S ribosomal protein L21 compare
TX73_018705 -0.6 -2.2 energy-dependent translational throttle protein EttA compare
TX73_022475 -0.6 -1.1 hypothetical protein compare
TX73_018330 -0.6 -1.3 hypothetical protein compare
TX73_001795 -0.6 -1.7 sulfate transporter family protein compare
TX73_003130 -0.6 -3.0 phosphoenolpyruvate--protein phosphotransferase compare
TX73_005630 -0.6 -2.6 MBL fold metallo-hydrolase compare
TX73_011515 -0.6 -1.7 VirB3 family type IV secretion system protein compare
TX73_019925 -0.6 -4.8 glycine cleavage system aminomethyltransferase GcvT compare
TX73_019930 -0.6 -3.4 glycine cleavage system protein GcvH compare
TX73_010675 -0.6 -1.1 DUF378 domain-containing protein compare
TX73_002270 -0.6 -1.0 RNA-binding protein compare
TX73_008200 -0.6 -2.4 hypothetical protein compare
TX73_004910 -0.5 -1.4 exodeoxyribonuclease VII small subunit compare
TX73_010695 -0.5 -0.7 EscE/YscE/SsaE family type III secretion system needle protein co-chaperone compare
TX73_019935 -0.5 -4.9 aminomethyl-transferring glycine dehydrogenase compare
TX73_013500 -0.5 -1.7 hypothetical protein compare
TX73_004425 -0.5 -3.4 zinc ABC transporter ATP-binding protein AztA compare
TX73_009655 -0.5 -1.9 hypothetical protein compare
TX73_001660 -0.5 -4.1 4-coumaroyl-homoserine lactone synthase compare
TX73_015010 -0.5 -1.9 PilZ domain-containing protein compare
TX73_012205 -0.5 -1.4 ABC transporter permease compare
TX73_012625 -0.5 -3.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein compare
TX73_000015 -0.5 -2.0 DNA replication/repair protein RecF compare
TX73_014755 -0.5 -1.1 twin-arginine translocase TatA/TatE family subunit compare
TX73_010905 -0.5 -2.2 DUF2023 family protein compare
TX73_021510 -0.5 -2.0 hypothetical protein compare
TX73_013225 -0.5 -1.0 glycosyltransferase family 2 protein compare
TX73_004440 -0.5 -3.8 GTP-binding protein compare
TX73_007865 -0.5 -3.5 transcriptional regulator PpsR compare
TX73_003470 -0.5 -2.3 4-hydroxybenzoyl-CoA reductase subunit gamma compare
TX73_002155 -0.5 -2.0 YggT family protein compare
TX73_023570 -0.5 -2.1 hypothetical protein compare
TX73_003880 -0.5 -1.4 phosphoadenylyl-sulfate reductase compare
TX73_015265 -0.5 -2.7 hypothetical protein compare
TX73_016530 -0.5 -2.8 hypothetical protein compare
TX73_015985 -0.5 -1.6 CvpA family protein compare
TX73_024640 -0.5 -2.2 lipoprotein compare
TX73_007665 -0.5 -1.3 light-harvesting antenna LH1, beta subunit compare
TX73_014285 -0.5 -0.8 DUF2842 domain-containing protein compare
TX73_005010 -0.5 -2.1 hydrogenase maturation nickel metallochaperone HypA compare
TX73_005955 -0.5 -1.4 DUF2093 domain-containing protein compare
TX73_003340 -0.5 -1.6 FlgD immunoglobulin-like domain containing protein compare
TX73_010165 -0.5 -3.7 ATP-binding protein compare
TX73_012075 -0.5 -1.7 hypothetical protein compare
TX73_011445 -0.4 -2.6 WYL domain-containing protein compare
TX73_013505 -0.4 -2.1 aliphatic sulfonate ABC transporter substrate-binding protein compare
TX73_015765 -0.4 -3.0 exopolyphosphatase compare
TX73_009965 -0.4 -3.3 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase compare
TX73_020585 -0.4 -1.5 cytochrome c compare
TX73_004485 -0.4 -3.2 type III PLP-dependent enzyme compare
TX73_021835 -0.4 -1.7 DUF934 domain-containing protein compare
TX73_005145 -0.4 -1.2 hypothetical protein compare
TX73_023605 -0.4 -1.4 hypothetical protein compare
TX73_010135 -0.4 -1.2 TetR/AcrR family transcriptional regulator compare
TX73_008085 -0.4 -2.4 YgcG family protein compare
TX73_009195 -0.4 -1.3 thioesterase family protein compare
TX73_003015 -0.4 -1.4 DUF1330 domain-containing protein compare
TX73_008480 -0.4 -1.6 ABC transporter ATP-binding protein compare
TX73_003870 -0.4 -1.5 sulfate ABC transporter permease subunit CysT compare
TX73_012955 -0.4 -2.4 haloacid dehalogenase type II compare
TX73_024920 -0.4 -1.2 DUF2474 domain-containing protein compare
TX73_015680 -0.4 -1.2 DUF1328 domain-containing protein compare
TX73_005260 -0.4 -2.0 hypothetical protein compare
TX73_016085 -0.4 -1.5 hypothetical protein compare
TX73_004445 -0.4 -3.5 WD40 repeat domain-containing protein compare
TX73_014160 -0.4 -1.3 hypothetical protein compare
TX73_016275 -0.4 -1.2 ATP-dependent Clp protease adapter ClpS compare
TX73_017075 -0.4 -1.4 MaoC family dehydratase compare
TX73_016325 -0.4 -0.8 hypothetical protein compare
TX73_007675 -0.4 -2.1 PucC family protein compare
TX73_013475 -0.4 -2.5 peptidylprolyl isomerase compare
TX73_021840 -0.4 -2.2 nitrite/sulfite reductase compare
TX73_010825 -0.4 -0.5 XapX domain-containing protein compare
TX73_020740 -0.4 -0.9 hypothetical protein compare
TX73_017010 -0.4 -0.7 TetR/AcrR family transcriptional regulator compare
TX73_000615 -0.4 -1.9 dTDP-4-dehydrorhamnose reductase compare
TX73_015245 -0.4 -0.6 NADH-quinone oxidoreductase subunit NuoI compare
TX73_021065 -0.4 -2.4 hypothetical protein compare
TX73_025045 -0.4 -1.9 hypothetical protein compare
TX73_020180 -0.4 -1.9 hypothetical protein compare
TX73_013260 -0.4 -1.1 hypothetical protein compare
TX73_007015 -0.4 -0.9 thiosulfate oxidation carrier complex protein SoxZ compare
TX73_011520 -0.4 -1.3 TrbC/VirB2 family protein compare
TX73_013265 -0.4 -0.6 cysteine synthase A compare
TX73_008845 -0.4 -1.7 YkgJ family cysteine cluster protein compare
TX73_021365 -0.4 -1.5 TrbC/VirB2 family protein compare
TX73_005365 -0.4 -1.0 DUF4234 domain-containing protein compare
TX73_024545 -0.4 -2.2 DNA polymerase I compare
TX73_020910 -0.4 -2.6 branched-chain amino acid ABC transporter permease compare
TX73_018670 -0.4 -2.2 hypothetical protein compare
TX73_000040 -0.4 -1.8 circadian clock KaiB family protein compare
TX73_006985 -0.4 -1.5 hypothetical protein compare
TX73_014220 -0.4 -1.9 hypothetical protein compare
TX73_019150 -0.4 -1.3 TetR/AcrR family transcriptional regulator compare
TX73_017160 -0.4 -2.1 Crp/Fnr family transcriptional regulator compare
TX73_021890 -0.4 -2.7 response regulator compare
TX73_011700 -0.4 -1.6 transcriptional regulator compare
TX73_006960 -0.4 -1.3 hypothetical protein compare
TX73_011525 -0.4 -2.7 P-type conjugative transfer ATPase TrbB compare
TX73_010300 -0.4 -1.0 hypothetical protein compare
TX73_004215 -0.4 -2.4 acetyl-CoA C-acetyltransferase compare
TX73_009780 -0.4 -1.5 DUF3168 domain-containing protein compare
TX73_007630 -0.4 -1.5 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
TX73_023980 -0.4 -2.1 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
TX73_004875 -0.4 -0.9 DUF4164 domain-containing protein compare
TX73_011650 -0.4 -2.5 nuclease compare
TX73_006720 -0.4 -1.6 transposase compare
TX73_011270 -0.4 -2.2 NADPH:quinone oxidoreductase family protein compare
TX73_008985 -0.4 -2.2 putative hydro-lyase compare
TX73_000945 -0.4 -1.5 tyrosine recombinase XerC compare
TX73_021590 -0.4 -2.3 flavin reductase family protein compare
TX73_003060 -0.4 -0.8 [protein-PII] uridylyltransferase compare
TX73_012670 -0.4 -1.9 Rne/Rng family ribonuclease compare
TX73_010425 -0.4 -2.1 hypothetical protein compare
TX73_024305 -0.4 -1.7 MarR family transcriptional regulator compare
TX73_009425 -0.4 -1.9 type II toxin-antitoxin system VapC family toxin compare


Specific Phenotypes

None in this experiment

For Rhodopseudomonas palustris CGA009 in carbon source experiments

For carbon source Sodium butyrate across organisms