Experiment set2S476 for Rhodopseudomonas palustris CGA009

Compare to:

MDC_bicarb with Sodium butyrate and Adenine

200 most important genes:

  gene name fitness t score description  
TX73_009360 -5.9 -3.6 hypothetical protein compare
TX73_018135 -4.9 -3.8 DUF4169 family protein compare
TX73_000310 -4.7 -1.7 tRNA-Ala compare
TX73_001065 -4.2 -1.5 heme exporter protein CcmD compare
TX73_014755 -4.0 -2.0 twin-arginine translocase TatA/TatE family subunit compare
TX73_021975 -3.7 -4.8 CBS domain-containing protein compare
TX73_000335 -3.5 -2.4 30S ribosomal protein S1 compare
TX73_020255 -3.5 -5.3 RNA polymerase-binding protein DksA compare
TX73_022860 -3.4 -2.4 glycerol-3-phosphate dehydrogenase compare
TX73_013960 -3.4 -3.3 pyridoxine 5'-phosphate synthase compare
TX73_017750 -3.4 -5.4 zinc-finger domain-containing protein compare
TX73_019145 -3.3 -8.0 prephenate dehydratase compare
TX73_018565 -3.2 -2.2 DUF1778 domain-containing protein compare
TX73_018930 -3.0 -3.0 sulfurtransferase TusA family protein compare
TX73_007475 -2.8 -2.0 cytochrome c compare
TX73_014180 -2.5 -1.9 outer membrane protein assembly factor BamE compare
TX73_019175 -2.5 -6.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_005330 -2.4 -3.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_016020 -2.3 -3.5 tetratricopeptide repeat protein compare
TX73_001735 -2.3 -1.6 molecular chaperone DnaJ compare
TX73_021845 -2.3 -1.8 DUF2849 domain-containing protein compare
TX73_017130 -2.2 -2.2 hypothetical protein compare
TX73_022570 -2.2 -6.0 redox-regulated ATPase YchF compare
TX73_015245 -2.2 -1.7 NADH-quinone oxidoreductase subunit NuoI compare
TX73_018140 -2.1 -2.1 ribbon-helix-helix domain-containing protein compare
TX73_022015 -2.0 -5.0 response regulator compare
TX73_022760 -2.0 -3.5 metallophosphoesterase compare
TX73_009115 -2.0 -7.3 phosphoenolpyruvate carboxylase compare
TX73_016180 -1.9 -1.6 50S ribosomal protein L33 compare
TX73_018520 -1.9 -1.1 FAD-dependent oxidoreductase compare
TX73_004430 -1.9 -6.3 metal ABC transporter permease compare
TX73_020625 -1.8 -5.0 NAD-dependent epimerase compare
TX73_010930 -1.8 -1.6 hemin uptake protein HemP compare
TX73_012550 -1.7 -1.2 DUF2155 domain-containing protein compare
TX73_004435 -1.7 -4.6 metal ABC transporter substrate-binding protein compare
TX73_018540 -1.7 -9.1 phosphomethylpyrimidine synthase ThiC compare
TX73_019180 -1.6 -1.8 methionine synthase compare
TX73_023680 -1.6 -2.6 MaoC family dehydratase compare
TX73_015590 -1.6 -1.5 light-harvesting protein compare
TX73_013265 -1.5 -1.2 cysteine synthase A compare
TX73_004425 -1.5 -5.4 zinc ABC transporter ATP-binding protein AztA compare
TX73_003225 -1.5 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
TX73_024110 -1.5 -1.0 transketolase compare
TX73_013740 -1.5 -1.6 light-harvesting protein compare
TX73_015855 -1.4 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_024670 -1.4 -3.8 3-hydroxybutyryl-CoA dehydrogenase compare
TX73_024775 -1.4 -6.9 O-succinylhomoserine sulfhydrylase compare
TX73_012525 -1.3 -4.3 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_006945 -1.3 -0.9 hypothetical protein compare
TX73_005530 -1.3 -2.9 FAD-binding oxidoreductase compare
TX73_012760 -1.3 -1.2 SUF system Fe-S cluster assembly protein compare
TX73_002805 -1.2 -1.6 disulfide bond formation protein B compare
TX73_006785 -1.2 -2.4 DUF3551 domain-containing protein compare
TX73_001570 -1.2 -1.9 protein-export chaperone SecB compare
TX73_024840 -1.2 -2.1 phosphate ABC transporter permease subunit PstC compare
TX73_004770 -1.2 -1.1 hypothetical protein compare
TX73_018080 -1.1 -3.1 FtsH protease activity modulator HflK compare
TX73_013225 -1.1 -1.6 glycosyltransferase family 2 protein compare
TX73_013095 -1.1 -5.3 glycosyltransferase family 4 protein compare
TX73_003845 -1.1 -1.2 high potential iron sulfur protein compare
TX73_008350 -1.0 -3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
TX73_005235 -1.0 -1.0 DUF2892 domain-containing protein compare
TX73_013420 -1.0 -3.9 nitrogen regulation protein NR(I) compare
TX73_002300 -1.0 -1.5 helix-turn-helix domain-containing protein compare
TX73_018330 -1.0 -1.4 hypothetical protein compare
TX73_007080 -1.0 -1.4 V-containing nitrogenase subunit delta compare
TX73_014975 -1.0 -2.8 SurA N-terminal domain-containing protein compare
TX73_000270 -1.0 -2.4 PTS IIA-like nitrogen regulatory protein PtsN compare
TX73_000815 -0.9 -2.2 50S ribosomal protein L21 compare
TX73_007980 -0.9 -2.2 putative photosynthetic complex assembly protein PuhE compare
TX73_009930 -0.9 -2.6 ferritin family protein compare
TX73_021865 -0.9 -0.8 hypothetical protein compare
TX73_011520 -0.9 -2.2 TrbC/VirB2 family protein compare
TX73_002270 -0.9 -1.0 RNA-binding protein compare
TX73_022005 -0.9 -3.8 PAS domain S-box protein compare
TX73_015270 -0.9 -1.5 NADH-quinone oxidoreductase subunit NuoE compare
TX73_018335 -0.9 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
TX73_024230 -0.9 -1.6 trehalose-phosphatase compare
TX73_016285 -0.9 -1.0 serine hydrolase compare
TX73_017535 -0.8 -0.7 GTP cyclohydrolase I FolE compare
TX73_000615 -0.8 -2.3 dTDP-4-dehydrorhamnose reductase compare
TX73_021040 -0.8 -2.5 glycosyltransferase family 2 protein compare
TX73_004875 -0.8 -1.6 DUF4164 domain-containing protein compare
TX73_007665 -0.8 -2.2 light-harvesting antenna LH1, beta subunit compare
TX73_018870 -0.8 -5.4 4-alpha-glucanotransferase compare
TX73_018705 -0.8 -1.8 energy-dependent translational throttle protein EttA compare
TX73_012280 -0.8 -0.8 hypothetical protein compare
TX73_000945 -0.8 -2.3 tyrosine recombinase XerC compare
TX73_025125 -0.8 -2.5 hypothetical protein compare
TX73_003025 -0.8 -1.9 Tex family protein compare
TX73_005890 -0.8 -2.6 ChbG/HpnK family deacetylase compare
TX73_023105 -0.8 -1.3 hypothetical protein compare
TX73_017145 -0.7 -2.2 hypothetical protein compare
TX73_012510 -0.7 -2.9 porin compare
TX73_021000 -0.7 -3.0 NAD-dependent epimerase/dehydratase family protein compare
TX73_009780 -0.7 -2.0 DUF3168 domain-containing protein compare
TX73_014645 -0.7 -5.0 phytoene/squalene synthase family protein compare
TX73_001795 -0.7 -1.7 sulfate transporter family protein compare
TX73_011515 -0.7 -1.7 VirB3 family type IV secretion system protein compare
TX73_024450 -0.7 -2.7 DedA family protein compare
TX73_021010 -0.7 -1.5 GtrA family protein compare
TX73_009400 -0.7 -2.3 hypothetical protein compare
TX73_002365 -0.7 -2.4 murein biosynthesis integral membrane protein MurJ compare
TX73_007630 -0.7 -2.1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
TX73_024640 -0.7 -1.8 lipoprotein compare
TX73_006095 -0.7 -1.1 DUF6111 family protein compare
TX73_020465 -0.7 -2.8 glycosyltransferase compare
TX73_009645 -0.7 -3.2 PepSY-associated TM helix domain-containing protein compare
TX73_009435 -0.7 -3.8 methylmalonyl-CoA mutase compare
TX73_006450 -0.7 -1.5 zinc ribbon domain-containing protein compare
TX73_006565 -0.7 -3.0 GatB/YqeY domain-containing protein compare
TX73_024565 -0.7 -5.4 glycogen/starch/alpha-glucan phosphorylase compare
TX73_017645 -0.7 -2.1 hypothetical protein compare
TX73_009585 -0.7 -2.1 hypothetical protein compare
TX73_019195 -0.7 -1.1 hypothetical protein compare
TX73_023135 -0.7 -2.0 cadmium ABC transporter ATPase compare
TX73_010115 -0.7 -1.7 hypothetical protein compare
TX73_023665 -0.7 -2.0 TRAP transporter small permease compare
TX73_023610 -0.7 -1.7 hypothetical protein compare
TX73_001320 -0.7 -4.1 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_013475 -0.7 -2.4 peptidylprolyl isomerase compare
TX73_001000 -0.6 -4.3 cell division protein ZapE compare
TX73_001350 -0.6 -1.2 HAMP domain-containing protein compare
TX73_012965 -0.6 -1.9 hypothetical protein compare
TX73_017550 -0.6 -2.0 membrane protein insertion efficiency factor YidD compare
TX73_002960 -0.6 -1.2 ActR/PrrA/RegA family redox response regulator transcription factor compare
TX73_009445 -0.6 -4.2 methylmalonyl-CoA mutase subunit beta compare
TX73_007950 -0.6 -2.0 BCD family MFS transporter compare
TX73_005395 -0.6 -1.6 DUF3096 domain-containing protein compare
TX73_018975 -0.6 -1.9 HD domain-containing protein compare
TX73_010135 -0.6 -1.1 TetR/AcrR family transcriptional regulator compare
TX73_010900 -0.6 -2.2 cyanase compare
TX73_011645 -0.6 -2.6 hypothetical protein compare
TX73_010540 -0.6 -1.2 hypothetical protein compare
TX73_023110 -0.6 -1.7 pyridoxal-dependent decarboxylase compare
TX73_001250 -0.6 -1.2 50S ribosomal protein L19 compare
TX73_010840 -0.6 -1.8 glyoxalase compare
TX73_009305 -0.6 -2.2 hypothetical protein compare
TX73_020455 -0.6 -3.6 O-antigen ligase family protein compare
TX73_003165 -0.6 -3.9 sugar kinase compare
TX73_009555 -0.6 -1.9 PAS domain-containing sensor histidine kinase compare
TX73_001315 -0.6 -1.5 EVE domain-containing protein compare
TX73_016085 -0.6 -1.8 hypothetical protein compare
TX73_003330 -0.6 -1.2 flagellar protein FliS compare
TX73_007675 -0.6 -2.4 PucC family protein compare
TX73_018075 -0.6 -1.8 protease modulator HflC compare
TX73_021105 -0.6 -2.3 Lrp/AsnC family transcriptional regulator compare
TX73_023065 -0.6 -1.5 DUF1499 domain-containing protein compare
TX73_005955 -0.6 -1.2 DUF2093 domain-containing protein compare
TX73_013720 -0.6 -1.9 BrnA antitoxin family protein compare
TX73_023355 -0.6 -1.8 hypothetical protein compare
TX73_013045 -0.6 -1.7 DUF192 domain-containing protein compare
TX73_013800 -0.6 -2.2 succinate dehydrogenase assembly factor 2 compare
TX73_009565 -0.6 -1.3 DUF1491 family protein compare
TX73_008645 -0.5 -1.9 response regulator compare
TX73_013355 -0.5 -3.4 protein-L-isoaspartate O-methyltransferase compare
TX73_015765 -0.5 -2.6 exopolyphosphatase compare
TX73_023745 -0.5 -0.9 BA14K family protein compare
TX73_022735 -0.5 -1.2 hypothetical protein compare
TX73_021605 -0.5 -1.7 hypothetical protein compare
TX73_007485 -0.5 -1.0 CbbQ/NirQ/NorQ/GpvN family protein compare
TX73_015680 -0.5 -1.1 DUF1328 domain-containing protein compare
TX73_019330 -0.5 -2.3 aminobacteriohopanetriol synthase HpnO compare
TX73_003105 -0.5 -1.9 DUF1178 family protein compare
TX73_014655 -0.5 -1.2 protein translocase subunit SecF compare
TX73_013975 -0.5 -0.9 ribonuclease III compare
TX73_020010 -0.5 -2.6 hypothetical protein compare
TX73_010675 -0.5 -0.7 DUF378 domain-containing protein compare
TX73_023215 -0.5 -1.6 thioredoxin family protein compare
TX73_018690 -0.5 -1.4 hypothetical protein compare
TX73_007545 -0.5 -2.3 AtzE family amidohydrolase compare
TX73_019070 -0.5 -3.0 AAA family ATPase compare
TX73_002755 -0.5 -1.3 beta-ketoacyl-ACP reductase compare
TX73_007900 -0.5 -3.0 transcriptional regulator PpsR compare
TX73_001720 -0.5 -0.8 nucleotide exchange factor GrpE compare
TX73_019990 -0.5 -1.2 hypothetical protein compare
TX73_023320 -0.5 -2.6 autotransporter domain-containing protein compare
TX73_008220 -0.5 -0.9 BolA family transcriptional regulator compare
TX73_022590 -0.5 -0.5 prolipoprotein diacylglyceryl transferase compare
TX73_006680 -0.5 -2.0 hypothetical protein compare
TX73_018785 -0.5 -2.0 hypothetical protein compare
TX73_021840 -0.5 -1.7 nitrite/sulfite reductase compare
TX73_014020 -0.5 -2.4 Nramp family divalent metal transporter compare
TX73_017195 -0.5 -1.7 hypothetical protein compare
TX73_006700 -0.5 -1.6 tRNA 2-thiouridine(34) synthase MnmA compare
TX73_015770 -0.5 -3.6 RNA degradosome polyphosphate kinase compare
TX73_002580 -0.5 -1.7 GNAT family N-acetyltransferase compare
TX73_020025 -0.5 -1.5 peptidylprolyl isomerase compare
TX73_010035 -0.5 -0.7 pyrroloquinoline quinone precursor peptide PqqA compare
TX73_015935 -0.5 -1.9 50S ribosomal protein L9 compare
TX73_004935 -0.5 -3.1 acyl-CoA dehydrogenase compare
TX73_012120 -0.5 -1.6 dimethylsulfonioproprionate lyase family protein compare
TX73_004440 -0.5 -2.4 GTP-binding protein compare
TX73_004685 -0.5 -1.7 hypothetical protein compare
TX73_015670 -0.5 -2.1 potassium transporter Kup compare
TX73_009890 -0.5 -0.5 c-type cytochrome biogenesis protein CcmI compare
TX73_020460 -0.5 -2.6 glycosyltransferase family 1 protein compare
TX73_011270 -0.5 -2.0 NADPH:quinone oxidoreductase family protein compare
TX73_021220 -0.5 -0.7 hypothetical protein compare
TX73_006780 -0.5 -1.3 sensor histidine kinase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium butyrate in Rhodopseudomonas palustris CGA009

For carbon source Sodium butyrate across organisms