Experiment set2S462 for Rhodopseudomonas palustris CGA009

Compare to:

PM with argon and Sodium bicarbonate 60 mM and Sodium thiosulfate pentahydrate 30 mM

200 most important genes:

  gene name fitness t score description  
TX73_015245 -4.0 -2.1 NADH-quinone oxidoreductase subunit NuoI compare
TX73_017730 -2.9 -3.1 DUF3126 family protein compare
TX73_022760 -2.6 -3.9 metallophosphoesterase compare
TX73_022860 -2.3 -5.1 glycerol-3-phosphate dehydrogenase compare
TX73_013225 -1.7 -3.3 glycosyltransferase family 2 protein compare
TX73_019175 -1.6 -4.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_024650 -1.6 -1.8 TlpA disulfide reductase family protein compare
TX73_013740 -1.5 -2.0 light-harvesting protein compare
TX73_010270 -1.5 -0.9 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_022590 -1.5 -1.2 prolipoprotein diacylglyceryl transferase compare
TX73_001350 -1.5 -2.4 HAMP domain-containing protein compare
TX73_005330 -1.3 -2.3 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_016180 -1.2 -1.0 50S ribosomal protein L33 compare
TX73_010825 -1.2 -1.1 XapX domain-containing protein compare
TX73_012855 -1.2 -3.2 DedA family protein compare
TX73_002045 -1.2 -2.1 phosphatase PAP2 family protein compare
TX73_021975 -1.1 -3.4 CBS domain-containing protein compare
TX73_002300 -1.1 -2.3 helix-turn-helix domain-containing protein compare
TX73_005640 -1.0 -2.2 YebC/PmpR family DNA-binding transcriptional regulator compare
TX73_011515 -1.0 -2.7 VirB3 family type IV secretion system protein compare
TX73_012670 -1.0 -3.3 Rne/Rng family ribonuclease compare
TX73_021010 -1.0 -2.2 GtrA family protein compare
TX73_000395 -1.0 -1.2 nucleotidyltransferase family protein compare
TX73_009890 -0.9 -1.0 c-type cytochrome biogenesis protein CcmI compare
TX73_018075 -0.9 -3.1 protease modulator HflC compare
TX73_024830 -0.9 -1.2 phosphate ABC transporter ATP-binding protein PstB compare
TX73_013955 -0.9 -3.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
TX73_004835 -0.9 -2.7 tetratricopeptide repeat protein compare
TX73_019780 -0.9 -1.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
TX73_019145 -0.9 -3.9 prephenate dehydratase compare
TX73_001570 -0.9 -1.5 protein-export chaperone SecB compare
TX73_023155 -0.9 -3.8 NAD(P)/FAD-dependent oxidoreductase compare
TX73_012445 -0.9 -0.7 hypothetical protein compare
TX73_017585 -0.9 -0.9 TenA/THI-4 family protein compare
TX73_000815 -0.8 -1.7 50S ribosomal protein L21 compare
TX73_016270 -0.8 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
TX73_011715 -0.8 -1.6 hypothetical protein compare
TX73_022570 -0.8 -2.3 redox-regulated ATPase YchF compare
TX73_024745 -0.8 -2.3 hypothetical protein compare
TX73_016075 -0.8 -0.9 BrnT family toxin compare
TX73_024230 -0.8 -1.6 trehalose-phosphatase compare
TX73_001735 -0.8 -1.1 molecular chaperone DnaJ compare
TX73_007680 -0.8 -2.0 hypothetical protein compare
TX73_002960 -0.8 -1.3 ActR/PrrA/RegA family redox response regulator transcription factor compare
TX73_019670 -0.8 -3.3 XdhC family protein compare
TX73_007415 -0.7 -1.0 hypothetical protein compare
TX73_003085 -0.7 -3.0 hypothetical protein compare
TX73_023175 -0.7 -3.2 cytochrome c compare
TX73_013585 -0.7 -2.3 aliphatic sulfonate ABC transporter substrate-binding protein compare
TX73_020740 -0.7 -1.1 hypothetical protein compare
TX73_017425 -0.7 -0.7 sodium:solute symporter compare
TX73_009180 -0.7 -1.0 DUF3237 domain-containing protein compare
TX73_017370 -0.7 -3.0 hypothetical protein compare
TX73_023195 -0.7 -2.9 thiosulfate oxidation carrier protein SoxY compare
TX73_007900 -0.7 -4.5 transcriptional regulator PpsR compare
TX73_004910 -0.7 -1.2 exodeoxyribonuclease VII small subunit compare
TX73_014020 -0.7 -3.9 Nramp family divalent metal transporter compare
TX73_012510 -0.7 -3.2 porin compare
TX73_007015 -0.7 -1.1 thiosulfate oxidation carrier complex protein SoxZ compare
TX73_005995 -0.7 -3.3 molybdenum cofactor biosynthesis protein MoaE compare
TX73_018930 -0.7 -1.3 sulfurtransferase TusA family protein compare
TX73_001835 -0.6 -2.4 HPr family phosphocarrier protein compare
TX73_012375 -0.6 -1.9 epoxyqueuosine reductase QueH compare
TX73_013340 -0.6 -2.1 hypothetical protein compare
TX73_023205 -0.6 -1.7 sulfur oxidation c-type cytochrome SoxX compare
TX73_006095 -0.6 -1.0 DUF6111 family protein compare
TX73_018745 -0.6 -2.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
TX73_023325 -0.6 -2.0 adenine phosphoribosyltransferase compare
TX73_018165 -0.6 -1.9 UvrD-helicase domain-containing protein compare
TX73_009305 -0.6 -1.9 hypothetical protein compare
TX73_024920 -0.6 -1.3 DUF2474 domain-containing protein compare
TX73_024040 -0.6 -1.0 4Fe-4S binding protein compare
TX73_011275 -0.6 -2.0 MaoC family dehydratase compare
TX73_013380 -0.6 -2.1 hypothetical protein compare
TX73_019425 -0.6 -2.4 cache domain-containing protein compare
TX73_005270 -0.6 -1.5 cytochrome b5-like heme/steroid binding domain-containing protein compare
TX73_010900 -0.6 -1.6 cyanase compare
TX73_009905 -0.6 -1.0 cytochrome c-type biogenesis protein CcmH compare
TX73_021560 -0.6 -2.2 ABC transporter permease compare
TX73_023225 -0.6 -2.0 thioredoxin fold domain-containing protein compare
TX73_012550 -0.6 -1.0 DUF2155 domain-containing protein compare
TX73_019330 -0.6 -2.6 aminobacteriohopanetriol synthase HpnO compare
TX73_006985 -0.6 -2.1 hypothetical protein compare
TX73_013665 -0.6 -0.9 L-2-amino-thiazoline-4-carboxylic acid hydrolase compare
TX73_020755 -0.6 -1.5 hypothetical protein compare
TX73_012525 -0.5 -3.0 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_019265 -0.5 -1.4 ABC transporter ATP-binding protein compare
TX73_022735 -0.5 -2.1 hypothetical protein compare
TX73_009780 -0.5 -2.0 DUF3168 domain-containing protein compare
TX73_023190 -0.5 -2.3 thiosulfate oxidation carrier complex protein SoxZ compare
TX73_024685 -0.5 -3.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
TX73_019180 -0.5 -1.1 methionine synthase compare
TX73_006700 -0.5 -2.0 tRNA 2-thiouridine(34) synthase MnmA compare
TX73_009050 -0.5 -1.6 DUF6285 domain-containing protein compare
TX73_001260 -0.5 -1.0 ribosome maturation factor RimM compare
TX73_005595 -0.5 -1.6 hypothetical protein compare
TX73_023200 -0.5 -2.4 sulfur oxidation c-type cytochrome SoxA compare
TX73_023180 -0.5 -2.5 sulfite dehydrogenase compare
TX73_008860 -0.5 -2.6 DNA oxidative demethylase AlkB compare
TX73_014045 -0.5 -3.4 arginyltransferase compare
TX73_008365 -0.5 -1.0 chemotaxis protein CheW compare
TX73_006445 -0.5 -2.5 acetamidase/formamidase family protein compare
TX73_000050 -0.5 -1.6 Lrp/AsnC family transcriptional regulator compare
TX73_016325 -0.5 -1.5 hypothetical protein compare
TX73_011380 -0.5 -3.0 AlpA family phage regulatory protein compare
TX73_005075 -0.5 -1.6 branched-chain amino acid ABC transporter permease compare
TX73_013265 -0.5 -0.6 cysteine synthase A compare
TX73_018685 -0.5 -3.4 trans-aconitate 2-methyltransferase compare
TX73_013760 -0.5 -0.5 beta-1-3, beta-1-6-glucan biosynthesis protein compare
TX73_009330 -0.5 -2.5 DUF1109 domain-containing protein compare
TX73_018875 -0.5 -2.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_008905 -0.5 -1.5 sulfite oxidase-like oxidoreductase compare
TX73_003095 -0.5 -2.1 glutaredoxin 3 compare
TX73_023160 -0.5 -2.8 FCSD flavin-binding domain-containing protein compare
TX73_007485 -0.5 -0.8 CbbQ/NirQ/NorQ/GpvN family protein compare
TX73_005670 -0.5 -1.8 tol-pal system-associated acyl-CoA thioesterase compare
TX73_020585 -0.5 -1.3 cytochrome c compare
TX73_018590 -0.5 -1.0 hypothetical protein compare
TX73_016155 -0.5 -1.1 type I DNA topoisomerase compare
TX73_008220 -0.5 -1.5 BolA family transcriptional regulator compare
TX73_022525 -0.5 -1.8 (2Fe-2S) ferredoxin domain-containing protein compare
TX73_004665 -0.5 -4.0 N-formylglutamate amidohydrolase compare
TX73_011560 -0.5 -2.4 hypothetical protein compare
TX73_018170 -0.5 -0.6 type II toxin-antitoxin system HicB family antitoxin compare
TX73_010425 -0.5 -2.6 hypothetical protein compare
TX73_023240 -0.5 -1.9 DsrE family protein compare
TX73_022405 -0.5 -2.0 hypothetical protein compare
TX73_001795 -0.5 -1.4 sulfate transporter family protein compare
TX73_009560 -0.5 -1.8 peptidoglycan-binding protein compare
TX73_007620 -0.5 -2.6 alpha/beta fold hydrolase compare
TX73_005610 -0.5 -2.1 DUF2892 domain-containing protein compare
TX73_006845 -0.5 -1.1 STN domain-containing protein compare
TX73_023330 -0.5 -1.9 hypothetical protein compare
TX73_003335 -0.5 -1.5 hypothetical protein compare
TX73_024540 -0.5 -1.4 hypothetical protein compare
TX73_023760 -0.5 -1.7 hypothetical protein compare
TX73_024015 -0.5 -1.3 nitrogen fixation protein NifZ compare
TX73_005260 -0.5 -1.9 hypothetical protein compare
TX73_008050 -0.4 -2.2 ABC transporter ATP-binding protein compare
TX73_022015 -0.4 -1.8 response regulator compare
TX73_024600 -0.4 -2.8 YdcF family protein compare
TX73_001320 -0.4 -3.5 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_011840 -0.4 -2.3 tetratricopeptide repeat protein compare
TX73_009400 -0.4 -1.9 hypothetical protein compare
TX73_006680 -0.4 -1.8 hypothetical protein compare
TX73_023235 -0.4 -2.4 YeeE/YedE family protein compare
TX73_015590 -0.4 -0.8 light-harvesting protein compare
TX73_004690 -0.4 -1.8 NAD(P)H:quinone oxidoreductase compare
TX73_016445 -0.4 -0.9 histone compare
TX73_001550 -0.4 -3.3 kinase/pyrophosphorylase compare
TX73_023185 -0.4 -2.3 thiosulfohydrolase SoxB compare
TX73_012210 -0.4 -1.5 PLP-dependent transferase compare
TX73_010195 -0.4 -2.9 GTP 3',8-cyclase MoaA compare
TX73_008630 -0.4 -1.6 PilZ domain-containing protein compare
TX73_010250 -0.4 -1.1 hypothetical protein compare
TX73_012840 -0.4 -2.3 hypothetical protein compare
TX73_016085 -0.4 -1.9 hypothetical protein compare
TX73_014160 -0.4 -0.9 hypothetical protein compare
TX73_002170 -0.4 -1.8 nuclear transport factor 2 family protein compare
TX73_017160 -0.4 -1.7 Crp/Fnr family transcriptional regulator compare
TX73_018035 -0.4 -1.3 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_015855 -0.4 -0.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_018695 -0.4 -1.7 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_023355 -0.4 -1.6 hypothetical protein compare
TX73_009140 -0.4 -1.4 Zn-ribbon domain-containing OB-fold protein compare
TX73_004850 -0.4 -1.7 type II toxin-antitoxin system PemK/MazF family toxin compare
TX73_013890 -0.4 -1.6 alpha/beta hydrolase compare
TX73_011650 -0.4 -1.9 nuclease compare
TX73_020290 -0.4 -0.7 flagellar biosynthesis repressor FlbT compare
TX73_020180 -0.4 -1.0 hypothetical protein compare
TX73_010525 -0.4 -2.4 ABC transporter substrate-binding protein compare
TX73_010840 -0.4 -1.5 glyoxalase compare
TX73_011665 -0.4 -1.7 hypothetical protein compare
TX73_022415 -0.4 -2.1 SulP family inorganic anion transporter compare
TX73_010985 -0.4 -1.2 hypothetical protein compare
TX73_008135 -0.4 -1.6 YcjX family protein compare
TX73_008490 -0.4 -1.4 flagellar hook basal-body protein compare
TX73_003125 -0.4 -0.6 aspartate kinase compare
TX73_013215 -0.4 -1.2 glycosyltransferase family 39 protein compare
TX73_014655 -0.4 -0.7 protein translocase subunit SecF compare
TX73_008645 -0.4 -1.4 response regulator compare
TX73_004455 -0.4 -1.8 hypothetical protein compare
TX73_003105 -0.4 -1.5 DUF1178 family protein compare
TX73_024775 -0.4 -2.9 O-succinylhomoserine sulfhydrylase compare
TX73_015040 -0.4 -3.0 molybdopterin molybdotransferase MoeA compare
TX73_004710 -0.4 -2.6 YqgE/AlgH family protein compare
TX73_003600 -0.4 -1.6 phosphonate metabolism transcriptional regulator PhnF compare
TX73_004305 -0.4 -1.7 cytochrome c oxidase assembly protein compare
TX73_011305 -0.4 -1.5 YaiI/YqxD family protein compare
TX73_024020 -0.4 -1.5 nitrogen fixation protein NifZ compare
TX73_003155 -0.4 -1.9 hydroxyacylglutathione hydrolase compare
TX73_016275 -0.4 -1.0 ATP-dependent Clp protease adapter ClpS compare
TX73_024050 -0.4 -1.0 4Fe-4S binding protein compare
TX73_012485 -0.4 -1.9 acetamidase/formamidase family protein compare
TX73_009970 -0.4 -1.1 hypothetical protein compare
TX73_018555 -0.4 -1.9 DUF6429 family protein compare
TX73_019665 -0.4 -1.5 XdhC family protein compare
TX73_013175 -0.4 -2.0 threonine/serine exporter family protein compare
TX73_014395 -0.4 -2.1 MBL fold metallo-hydrolase compare
TX73_005055 -0.4 -1.9 IclR family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium bicarbonate in Rhodopseudomonas palustris CGA009

For carbon source Sodium bicarbonate across organisms