Experiment set2S454 for Rhodopseudomonas palustris CGA009

Compare to:

PM with Sodium succinate dibasic hexahydrate aerobic in dark

200 most important genes:

  gene name fitness t score description  
TX73_019145 -7.3 -5.0 prephenate dehydratase compare
TX73_010555 -6.0 -12.0 TRAP transporter small permease compare
TX73_024775 -5.8 -18.2 O-succinylhomoserine sulfhydrylase compare
TX73_023120 -5.7 -6.8 5-formyltetrahydrofolate cyclo-ligase compare
TX73_014855 -5.6 -19.4 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
TX73_014835 -5.6 -21.9 dihydrolipoyl dehydrogenase compare
TX73_010560 -5.6 -12.7 TRAP transporter large permease subunit compare
TX73_010550 -5.2 -14.5 TRAP transporter substrate-binding protein compare
TX73_018540 -5.2 -18.7 phosphomethylpyrimidine synthase ThiC compare
TX73_001320 -5.0 -16.9 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_022595 -4.9 -16.9 SAM-dependent methyltransferase compare
TX73_024110 -4.8 -2.1 transketolase compare
TX73_019175 -4.5 -3.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_014840 -4.4 -14.2 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase compare
TX73_002745 -4.1 -10.6 polyhydroxyalkanoate synthesis repressor PhaR compare
TX73_024230 -3.6 -2.5 trehalose-phosphatase compare
TX73_002205 -3.5 -10.0 Fur family transcriptional regulator compare
TX73_019180 -3.5 -3.0 methionine synthase compare
TX73_014850 -3.3 -12.0 pyruvate dehydrogenase complex E1 component subunit beta compare
TX73_002045 -3.2 -3.1 phosphatase PAP2 family protein compare
TX73_021975 -2.9 -6.0 CBS domain-containing protein compare
TX73_013225 -2.8 -3.8 glycosyltransferase family 2 protein compare
TX73_018875 -2.8 -9.5 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_015245 -2.8 -2.3 NADH-quinone oxidoreductase subunit NuoI compare
TX73_022005 -2.7 -11.2 PAS domain S-box protein compare
TX73_021835 -2.7 -4.4 DUF934 domain-containing protein compare
TX73_021845 -2.6 -3.7 DUF2849 domain-containing protein compare
TX73_005115 -2.6 -4.8 cysteine-rich small domain-containing protein compare
TX73_020625 -2.5 -5.8 NAD-dependent epimerase compare
TX73_000960 -2.4 -3.7 dihydrolipoyl dehydrogenase compare
TX73_013945 -2.4 -7.7 NYN domain-containing protein compare
TX73_001065 -2.4 -1.4 heme exporter protein CcmD compare
TX73_021840 -2.3 -5.6 nitrite/sulfite reductase compare
TX73_013965 -2.3 -1.7 holo-ACP synthase compare
TX73_009360 -2.3 -2.9 hypothetical protein compare
TX73_012760 -2.3 -3.1 SUF system Fe-S cluster assembly protein compare
TX73_013960 -2.2 -4.9 pyridoxine 5'-phosphate synthase compare
TX73_017750 -2.1 -5.1 zinc-finger domain-containing protein compare
TX73_013095 -2.1 -8.7 glycosyltransferase family 4 protein compare
TX73_008710 -2.1 -6.3 superoxide dismutase compare
TX73_007685 -2.1 -2.8 hypothetical protein compare
TX73_000335 -2.0 -2.8 30S ribosomal protein S1 compare
TX73_007900 -2.0 -9.3 transcriptional regulator PpsR compare
TX73_022015 -2.0 -4.7 response regulator compare
TX73_017730 -1.9 -2.5 DUF3126 family protein compare
TX73_018135 -1.9 -3.4 DUF4169 family protein compare
TX73_007475 -1.9 -2.5 cytochrome c compare
TX73_008350 -1.7 -5.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
TX73_021010 -1.7 -2.5 GtrA family protein compare
TX73_012935 -1.6 -4.5 LL-diaminopimelate aminotransferase compare
TX73_007780 -1.6 -7.8 oxygen-dependent coproporphyrinogen oxidase compare
TX73_018930 -1.6 -1.6 sulfurtransferase TusA family protein compare
TX73_000980 -1.6 -1.1 2-oxoglutarate dehydrogenase E1 component compare
TX73_012525 -1.6 -4.9 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_017755 -1.5 -11.8 FAD-dependent monooxygenase compare
TX73_020290 -1.5 -2.5 flagellar biosynthesis repressor FlbT compare
TX73_000085 -1.5 -5.8 cytochrome-c oxidase, cbb3-type subunit III compare
TX73_020465 -1.5 -5.8 glycosyltransferase compare
TX73_002960 -1.4 -2.3 ActR/PrrA/RegA family redox response regulator transcription factor compare
TX73_004430 -1.4 -5.4 metal ABC transporter permease compare
TX73_011775 -1.4 -6.7 ABC transporter ATP-binding protein compare
TX73_024840 -1.4 -2.5 phosphate ABC transporter permease subunit PstC compare
TX73_020460 -1.4 -7.9 glycosyltransferase family 1 protein compare
TX73_022590 -1.4 -1.3 prolipoprotein diacylglyceryl transferase compare
TX73_019780 -1.4 -2.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
TX73_002300 -1.4 -3.0 helix-turn-helix domain-containing protein compare
TX73_011785 -1.3 -7.6 branched-chain amino acid ABC transporter permease compare
TX73_011500 -1.3 -1.5 putative entry exclusion protein TrbK-alt compare
TX73_021025 -1.3 -4.5 glycosyltransferase family 2 protein compare
TX73_020455 -1.3 -8.9 O-antigen ligase family protein compare
TX73_004665 -1.3 -9.4 N-formylglutamate amidohydrolase compare
TX73_021865 -1.3 -1.5 hypothetical protein compare
TX73_015770 -1.3 -9.1 RNA degradosome polyphosphate kinase compare
TX73_000270 -1.3 -3.3 PTS IIA-like nitrogen regulatory protein PtsN compare
TX73_021000 -1.3 -5.4 NAD-dependent epimerase/dehydratase family protein compare
TX73_022760 -1.3 -2.3 metallophosphoesterase compare
TX73_018250 -1.3 -1.9 UDP-3-O-acyl-N-acetylglucosamine deacetylase compare
TX73_013765 -1.3 -6.2 beta-(1-6) glucans synthase compare
TX73_011770 -1.3 -6.5 ABC transporter ATP-binding protein compare
TX73_020485 -1.2 -5.7 NAD(P)/FAD-dependent oxidoreductase compare
TX73_011780 -1.2 -5.1 branched-chain amino acid ABC transporter permease compare
TX73_015855 -1.2 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_014285 -1.2 -1.7 DUF2842 domain-containing protein compare
TX73_002195 -1.2 -5.6 D-glycerate dehydrogenase compare
TX73_016270 -1.2 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
TX73_005760 -1.2 -7.9 EAL domain-containing protein compare
TX73_017175 -1.2 -6.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
TX73_006700 -1.2 -4.4 tRNA 2-thiouridine(34) synthase MnmA compare
TX73_024450 -1.1 -4.7 DedA family protein compare
TX73_024435 -1.1 -6.5 Gfo/Idh/MocA family oxidoreductase compare
TX73_021005 -1.1 -7.6 thiamine pyrophosphate-binding protein compare
TX73_017190 -1.1 -6.2 hypothetical protein compare
TX73_022860 -1.1 -2.9 glycerol-3-phosphate dehydrogenase compare
TX73_013955 -1.1 -4.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
TX73_004425 -1.1 -4.8 zinc ABC transporter ATP-binding protein AztA compare
TX73_017535 -1.1 -1.1 GTP cyclohydrolase I FolE compare
TX73_004320 -1.1 -5.5 SURF1 family protein compare
TX73_011440 -1.0 -2.7 hypothetical protein compare
TX73_014020 -1.0 -5.8 Nramp family divalent metal transporter compare
TX73_000075 -1.0 -3.5 FixH family protein compare
TX73_000070 -1.0 -6.9 cation-translocating P-type ATPase compare
TX73_000100 -1.0 -8.1 cytochrome-c oxidase, cbb3-type subunit I compare
TX73_001570 -1.0 -1.9 protein-export chaperone SecB compare
TX73_020640 -1.0 -6.0 nucleoside-diphosphate sugar epimerase/dehydratase compare
TX73_013845 -1.0 -5.1 UbiH/UbiF family hydroxylase compare
TX73_000095 -1.0 -4.8 cytochrome-c oxidase, cbb3-type subunit II compare
TX73_001550 -1.0 -7.1 kinase/pyrophosphorylase compare
TX73_023800 -1.0 -4.3 UDP-glucose 4-epimerase GalE compare
TX73_005960 -1.0 -2.7 exodeoxyribonuclease VII large subunit compare
TX73_000090 -1.0 -2.4 cbb3-type cytochrome c oxidase subunit 3 compare
TX73_010825 -1.0 -1.1 XapX domain-containing protein compare
TX73_004290 -1.0 -6.4 cytochrome c oxidase subunit I compare
TX73_005530 -1.0 -2.4 FAD-binding oxidoreductase compare
TX73_003885 -1.0 -5.4 sulfate adenylyltransferase subunit 2 compare
TX73_004435 -0.9 -3.7 metal ABC transporter substrate-binding protein compare
TX73_003075 -0.9 -2.7 (deoxy)nucleoside triphosphate pyrophosphohydrolase compare
TX73_003890 -0.9 -6.0 adenylyl-sulfate kinase compare
TX73_012750 -0.9 -1.9 Fe-S cluster assembly protein SufD compare
TX73_008250 -0.9 -4.4 Grx4 family monothiol glutaredoxin compare
TX73_019070 -0.9 -6.1 AAA family ATPase compare
TX73_020985 -0.9 -3.9 aldolase/citrate lyase family protein compare
TX73_020980 -0.9 -4.7 CDP-glucose 4,6-dehydratase compare
TX73_021850 -0.9 -4.4 siroheme synthase CysG compare
TX73_010165 -0.9 -5.8 ATP-binding protein compare
TX73_004305 -0.9 -2.7 cytochrome c oxidase assembly protein compare
TX73_011445 -0.9 -3.6 WYL domain-containing protein compare
TX73_004310 -0.9 -5.5 cytochrome c oxidase subunit 3 compare
TX73_000050 -0.9 -3.4 Lrp/AsnC family transcriptional regulator compare
TX73_000615 -0.9 -2.9 dTDP-4-dehydrorhamnose reductase compare
TX73_018585 -0.8 -1.6 hypothetical protein compare
TX73_003025 -0.8 -2.9 Tex family protein compare
TX73_001410 -0.8 -5.5 ubiquinone biosynthesis hydroxylase compare
TX73_006140 -0.8 -5.4 SDR family NAD(P)-dependent oxidoreductase compare
TX73_020010 -0.8 -4.8 hypothetical protein compare
TX73_016285 -0.8 -1.1 serine hydrolase compare
TX73_007620 -0.8 -4.5 alpha/beta fold hydrolase compare
TX73_024400 -0.8 -5.4 4-oxalomesaconate tautomerase compare
TX73_020975 -0.8 -3.8 glucose-1-phosphate cytidylyltransferase compare
TX73_020710 -0.8 -1.3 hypothetical protein compare
TX73_020990 -0.8 -2.9 SDR family NAD(P)-dependent oxidoreductase compare
TX73_021015 -0.8 -4.2 class I SAM-dependent methyltransferase compare
TX73_005890 -0.8 -3.3 ChbG/HpnK family deacetylase compare
TX73_018925 -0.8 -2.5 DUF6496 domain-containing protein compare
TX73_001835 -0.8 -2.9 HPr family phosphocarrier protein compare
TX73_021860 -0.8 -2.2 CsbD family protein compare
TX73_019135 -0.7 -5.5 cytochrome c family protein compare
TX73_014665 -0.7 -2.7 preprotein translocase subunit YajC compare
TX73_011020 -0.7 -1.7 c-type cytochrome compare
TX73_019960 -0.7 -1.9 hypothetical protein compare
TX73_008685 -0.7 -3.1 hypothetical protein compare
TX73_001350 -0.7 -1.3 HAMP domain-containing protein compare
TX73_004295 -0.7 -3.7 heme o synthase compare
TX73_000950 -0.7 -4.1 DUF4337 domain-containing protein compare
TX73_016370 -0.7 -3.9 DUF2384 domain-containing protein compare
TX73_024595 -0.7 -1.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
TX73_017850 -0.7 -1.5 type II toxin-antitoxin system VapC family toxin compare
TX73_018035 -0.7 -1.8 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_016275 -0.7 -1.7 ATP-dependent Clp protease adapter ClpS compare
TX73_014290 -0.7 -4.5 COX15/CtaA family protein compare
TX73_014045 -0.7 -4.3 arginyltransferase compare
TX73_003130 -0.7 -3.5 phosphoenolpyruvate--protein phosphotransferase compare
TX73_006095 -0.7 -1.7 DUF6111 family protein compare
TX73_001000 -0.7 -5.3 cell division protein ZapE compare
TX73_004300 -0.7 -2.4 CoxF protein compare
TX73_014845 -0.7 -1.9 DUF5076 domain-containing protein compare
TX73_004440 -0.7 -3.9 GTP-binding protein compare
TX73_007645 -0.6 -2.5 DUF2249 domain-containing protein compare
TX73_020755 -0.6 -2.2 hypothetical protein compare
TX73_021245 -0.6 -3.2 MarR family transcriptional regulator compare
TX73_024405 -0.6 -2.9 amidohydrolase family protein compare
TX73_021040 -0.6 -2.2 glycosyltransferase family 2 protein compare
TX73_000815 -0.6 -1.4 50S ribosomal protein L21 compare
TX73_024425 -0.6 -3.5 protocatechuate 4,5-dioxygenase subunit alpha compare
TX73_021020 -0.6 -3.3 glycosyltransferase family 2 protein compare
TX73_001510 -0.6 -1.8 hypothetical protein compare
TX73_012585 -0.6 -2.4 response regulator compare
TX73_015200 -0.6 -3.1 DUF1467 family protein compare
TX73_009305 -0.6 -2.0 hypothetical protein compare
TX73_000310 -0.6 -0.7 tRNA-Ala compare
TX73_004285 -0.6 -4.4 cytochrome c oxidase subunit II compare
TX73_015830 -0.6 -4.3 leucyl aminopeptidase compare
TX73_012735 -0.6 -4.4 cysteine desulfurase family protein compare
TX73_002625 -0.6 -2.4 site-specific tyrosine recombinase XerD compare
TX73_013770 -0.6 -3.2 hypothetical protein compare
TX73_014210 -0.6 -1.5 MerR family transcriptional regulator compare
TX73_009970 -0.6 -1.4 hypothetical protein compare
TX73_020630 -0.6 -3.3 lysylphosphatidylglycerol synthase transmembrane domain-containing protein compare
TX73_007415 -0.6 -0.9 hypothetical protein compare
TX73_006840 -0.6 -1.2 tyrosine-type recombinase/integrase compare
TX73_022485 -0.6 -1.8 TetR/AcrR family transcriptional regulator compare
TX73_019065 -0.6 -4.1 CpaD family pilus assembly protein compare
TX73_024830 -0.6 -0.6 phosphate ABC transporter ATP-binding protein PstB compare
TX73_009905 -0.6 -1.3 cytochrome c-type biogenesis protein CcmH compare
TX73_018220 -0.6 -3.7 aminopeptidase P family protein compare
TX73_014645 -0.6 -4.8 phytoene/squalene synthase family protein compare
TX73_014140 -0.6 -1.1 transcription antitermination factor NusB compare
TX73_011600 -0.6 -2.9 hypothetical protein compare
TX73_024670 -0.6 -2.1 3-hydroxybutyryl-CoA dehydrogenase compare
TX73_006040 -0.6 -2.1 tautomerase family protein compare
TX73_000895 -0.6 -3.1 glycosyltransferase family 1 protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source dark aerobic Sodium succinate dibasic hexahydrate in Rhodopseudomonas palustris CGA009

For carbon source dark aerobic Sodium succinate dibasic hexahydrate across organisms