Experiment set2S451 for Rhodopseudomonas palustris CGA009

Compare to:

PM with Sodium succinate dibasic hexahydrate and Sodium Formate aerobic in dark

Genes with specific phenotypes:

  gene name fitness t score description  
TX73_008250 -5.6 -7.7 Grx4 family monothiol glutaredoxin compare
TX73_003785 -4.8 -10.7 formate dehydrogenase subunit gamma compare
TX73_010175 -4.5 -15.9 Mrp/NBP35 family ATP-binding protein compare
TX73_016235 -4.5 -8.0 HIT family protein compare
TX73_014790 -4.5 -9.6 iron-sulfur cluster insertion protein ErpA compare
TX73_007780 -4.3 -11.8 oxygen-dependent coproporphyrinogen oxidase compare
TX73_003795 -4.3 -17.9 formate dehydrogenase subunit alpha compare
TX73_003790 -4.1 -16.5 NADH-quinone oxidoreductase subunit NuoF compare
TX73_012770 -4.0 -7.4 iron-sulfur cluster assembly accessory protein compare
TX73_018935 -4.0 -9.7 molybdenum cofactor guanylyltransferase MobA compare
TX73_005490 -3.8 -13.8 folate-binding protein YgfZ compare
TX73_003800 -3.8 -11.3 formate dehydrogenase accessory sulfurtransferase FdhD compare
TX73_013845 -3.8 -13.0 UbiH/UbiF family hydroxylase compare
TX73_014290 -3.6 -12.0 COX15/CtaA family protein compare
TX73_003780 -3.5 -15.8 LysR family transcriptional regulator compare
TX73_017755 -3.4 -18.6 FAD-dependent monooxygenase compare
TX73_020485 -3.4 -11.2 NAD(P)/FAD-dependent oxidoreductase compare
TX73_004310 -3.4 -11.7 cytochrome c oxidase subunit 3 compare
TX73_015200 -3.0 -7.8 DUF1467 family protein compare
TX73_004305 -2.9 -5.5 cytochrome c oxidase assembly protein compare
TX73_004295 -2.9 -9.2 heme o synthase compare
TX73_004290 -2.9 -10.6 cytochrome c oxidase subunit I compare
TX73_004285 -2.9 -11.0 cytochrome c oxidase subunit II compare
TX73_004320 -2.8 -8.7 SURF1 family protein compare
TX73_001410 -2.8 -12.3 ubiquinone biosynthesis hydroxylase compare
TX73_012660 -2.7 -11.0 dicarboxylate/amino acid:cation symporter compare
TX73_014395 -2.5 -8.0 MBL fold metallo-hydrolase compare
TX73_019135 -2.3 -11.9 cytochrome c family protein compare
TX73_016165 -2.1 -6.6 DUF983 domain-containing protein compare
TX73_015860 -1.9 -6.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
TX73_015275 -1.9 -6.7 FkbM family methyltransferase compare
TX73_017715 -1.9 -10.4 gamma carbonic anhydrase family protein compare
TX73_009305 -1.8 -6.7 hypothetical protein compare
TX73_011780 -1.8 -6.7 branched-chain amino acid ABC transporter permease compare
TX73_017990 -1.7 -8.6 energy transducer TonB compare
TX73_012735 -1.7 -10.0 cysteine desulfurase family protein compare
TX73_003155 -1.7 -6.3 hydroxyacylglutathione hydrolase compare
TX73_011325 -1.6 -9.6 Ppx/GppA phosphatase family protein compare
TX73_018005 -1.6 -6.7 Fe2+-dependent dioxygenase compare
TX73_011785 -1.5 -10.1 branched-chain amino acid ABC transporter permease compare
TX73_018660 -1.5 -7.2 (2Fe-2S)-binding protein compare
TX73_014770 -1.5 -10.1 beta-N-acetylhexosaminidase compare
TX73_018070 -1.5 -5.0 DUF2065 domain-containing protein compare
TX73_018000 -1.5 -6.7 tonB-system energizer ExbB compare
TX73_011775 -1.5 -7.9 ABC transporter ATP-binding protein compare
TX73_001575 -1.4 -7.8 Tim44/TimA family putative adaptor protein compare
TX73_011770 -1.4 -7.6 ABC transporter ATP-binding protein compare
TX73_009995 -1.4 -8.2 cation-efflux pump compare
TX73_010335 -1.3 -9.8 ABC transporter ATP-binding protein/permease compare
TX73_002680 -1.3 -7.3 Fur family transcriptional regulator compare
TX73_013840 -1.2 -5.9 AEC family transporter compare
TX73_022865 -1.2 -6.8 DeoR/GlpR family DNA-binding transcription regulator compare
TX73_018180 -1.2 -6.2 ABC transporter permease compare
TX73_018010 -1.2 -8.7 TonB-dependent receptor compare
TX73_024510 -1.2 -6.5 TOBE domain-containing protein compare
TX73_024400 -1.1 -6.2 4-oxalomesaconate tautomerase compare
TX73_005515 -1.1 -5.1 NUDIX hydrolase compare
TX73_000160 -1.0 -5.6 DUF1674 domain-containing protein compare
TX73_013300 +1.0 8.8 efflux transporter outer membrane subunit compare
TX73_010360 +1.1 8.8 flagellar motor protein MotB compare
TX73_013305 +1.1 9.7 efflux RND transporter periplasmic adaptor subunit compare
TX73_004845 +1.1 9.4 fructose-bisphosphate aldolase class I compare
TX73_013315 +1.1 10.2 efflux RND transporter permease subunit compare
TX73_013365 +1.2 9.5 DUF2497 domain-containing protein compare
TX73_013310 +1.2 10.9 efflux RND transporter permease subunit compare
TX73_018770 +1.3 7.9 hypothetical protein compare
TX73_008580 +1.4 6.2 hypothetical protein compare
TX73_006690 +1.5 10.6 flagellar hook capping FlgD N-terminal domain-containing protein compare
TX73_020375 +1.6 13.0 flagellar hook-associated protein FlgK compare
TX73_013040 +1.6 14.0 cold-shock protein compare
TX73_000410 +1.7 5.9 PAS-domain containing protein compare
TX73_020165 +1.8 9.5 flagellar biosynthetic protein FliO compare
TX73_024615 +1.8 14.3 zinc-ribbon domain-containing protein compare
TX73_008135 +1.8 10.0 YcjX family protein compare
TX73_016320 +1.8 9.0 hypothetical protein compare
TX73_020275 +1.9 13.1 hypothetical protein compare
TX73_019055 +2.1 7.9 Flp pilus assembly protein CpaB compare
TX73_025010 +2.1 12.9 MAPEG family protein compare
TX73_020135 +2.4 17.0 flagellar biosynthesis protein FlhB compare
TX73_020370 +2.4 21.2 flagellar biosynthesis protein FlgL compare
TX73_020200 +2.5 13.1 DUF6468 domain-containing protein compare
TX73_020230 +2.5 16.6 flagellar basal body L-ring protein FlgH compare
TX73_005845 +2.5 23.7 NAD(P)-binding protein compare
TX73_017520 +2.6 20.4 transglycosylase SLT domain-containing protein compare
TX73_020145 +2.6 22.8 flagellar biosynthesis protein FliQ compare
TX73_017690 +2.7 19.8 transglutaminase-like cysteine peptidase compare
TX73_020140 +2.8 24.7 flagellar biosynthetic protein FliR compare
TX73_004195 +2.8 17.8 hypothetical protein compare
TX73_006510 +2.8 23.9 sigma-54 dependent transcriptional regulator compare
TX73_020150 +2.9 25.6 flagellar hook-basal body complex protein FliE compare
TX73_000885 +2.9 27.6 divergent polysaccharide deacetylase family protein compare
TX73_020160 +2.9 23.4 flagellar basal body rod protein FlgB compare
TX73_020210 +3.0 20.8 flagellar basal body-associated protein FliL compare
TX73_020285 +3.1 26.2 flagellar biosynthesis regulator FlaF compare
TX73_020175 +3.1 29.4 tetratricopeptide repeat protein compare
TX73_006695 +3.1 29.7 flagellar hook-length control protein FliK compare
TX73_020195 +3.1 28.6 flagellar protein FlbB compare
TX73_010355 +3.2 26.9 MotA/TolQ/ExbB proton channel family protein compare
TX73_020380 +3.2 27.5 flagellar hook-basal body complex protein compare
TX73_020225 +3.2 29.0 flagellar basal body P-ring formation chaperone FlgA compare
TX73_015760 +3.3 29.5 bestrophin family protein compare
TX73_020260 +3.3 28.8 flagellar assembly protein FliX compare
TX73_020265 +3.5 33.1 flagellar basal body P-ring protein FlgI compare
TX73_020270 +3.6 21.8 flagellar assembly peptidoglycan hydrolase FlgJ compare
TX73_012655 +3.7 7.6 biotin transporter BioY compare
TX73_020215 +3.7 35.5 flagellar basal-body rod protein FlgF compare


Specific phenotypes for carbon source dark aerobic Sodium succinate dibasic hexahydrate across organisms