Experiment set2S450 for Rhodopseudomonas palustris CGA009

Compare to:

PM with Sodium succinate dibasic hexahydrate and Sodium Formate aerobic in dark

Genes with specific phenotypes:

  gene name fitness t score description  
TX73_008250 -6.1 -7.3 Grx4 family monothiol glutaredoxin compare
TX73_012770 -5.2 -9.3 iron-sulfur cluster assembly accessory protein compare
TX73_016235 -5.0 -10.2 HIT family protein compare
TX73_020485 -4.9 -13.2 NAD(P)/FAD-dependent oxidoreductase compare
TX73_003780 -4.7 -18.3 LysR family transcriptional regulator compare
TX73_010175 -4.7 -15.5 Mrp/NBP35 family ATP-binding protein compare
TX73_003800 -4.7 -12.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
TX73_014290 -4.6 -13.1 COX15/CtaA family protein compare
TX73_003795 -4.6 -20.1 formate dehydrogenase subunit alpha compare
TX73_003790 -4.4 -20.0 NADH-quinone oxidoreductase subunit NuoF compare
TX73_004310 -4.4 -15.3 cytochrome c oxidase subunit 3 compare
TX73_005490 -4.2 -14.9 folate-binding protein YgfZ compare
TX73_018935 -4.2 -10.6 molybdenum cofactor guanylyltransferase MobA compare
TX73_017755 -4.0 -22.5 FAD-dependent monooxygenase compare
TX73_007780 -4.0 -10.0 oxygen-dependent coproporphyrinogen oxidase compare
TX73_014790 -3.9 -8.1 iron-sulfur cluster insertion protein ErpA compare
TX73_003805 -3.9 -5.4 formate dehydrogenase subunit delta compare
TX73_004300 -3.8 -6.9 CoxF protein compare
TX73_003785 -3.8 -9.4 formate dehydrogenase subunit gamma compare
TX73_013845 -3.7 -13.5 UbiH/UbiF family hydroxylase compare
TX73_004290 -3.7 -14.5 cytochrome c oxidase subunit I compare
TX73_004320 -3.7 -12.4 SURF1 family protein compare
TX73_004285 -3.4 -15.7 cytochrome c oxidase subunit II compare
TX73_004295 -3.4 -10.6 heme o synthase compare
TX73_001410 -3.1 -14.3 ubiquinone biosynthesis hydroxylase compare
TX73_004305 -2.9 -7.0 cytochrome c oxidase assembly protein compare
TX73_015200 -2.9 -7.4 DUF1467 family protein compare
TX73_012660 -2.7 -13.3 dicarboxylate/amino acid:cation symporter compare
TX73_016165 -2.7 -8.5 DUF983 domain-containing protein compare
TX73_019135 -2.6 -12.7 cytochrome c family protein compare
TX73_018015 -2.5 -5.1 hypothetical protein compare
TX73_014395 -2.2 -7.8 MBL fold metallo-hydrolase compare
TX73_001575 -2.2 -11.4 Tim44/TimA family putative adaptor protein compare
TX73_018000 -2.1 -9.4 tonB-system energizer ExbB compare
TX73_024450 -2.1 -7.6 DedA family protein compare
TX73_015275 -2.0 -7.7 FkbM family methyltransferase compare
TX73_012735 -2.0 -11.9 cysteine desulfurase family protein compare
TX73_011325 -1.9 -11.8 Ppx/GppA phosphatase family protein compare
TX73_017715 -1.9 -12.1 gamma carbonic anhydrase family protein compare
TX73_017995 -1.8 -7.0 TonB system transport protein ExbD compare
TX73_011780 -1.8 -8.4 branched-chain amino acid ABC transporter permease compare
TX73_003155 -1.8 -8.6 hydroxyacylglutathione hydrolase compare
TX73_011770 -1.8 -9.5 ABC transporter ATP-binding protein compare
TX73_018070 -1.8 -5.8 DUF2065 domain-containing protein compare
TX73_005515 -1.7 -8.2 NUDIX hydrolase compare
TX73_011785 -1.7 -9.4 branched-chain amino acid ABC transporter permease compare
TX73_014770 -1.7 -11.0 beta-N-acetylhexosaminidase compare
TX73_018660 -1.7 -9.5 (2Fe-2S)-binding protein compare
TX73_017990 -1.6 -8.1 energy transducer TonB compare
TX73_018005 -1.6 -8.1 Fe2+-dependent dioxygenase compare
TX73_018010 -1.6 -11.0 TonB-dependent receptor compare
TX73_015860 -1.5 -7.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
TX73_011775 -1.5 -8.6 ABC transporter ATP-binding protein compare
TX73_018180 -1.5 -6.5 ABC transporter permease compare
TX73_016370 -1.5 -6.3 DUF2384 domain-containing protein compare
TX73_024510 -1.4 -7.3 TOBE domain-containing protein compare
TX73_013840 -1.4 -7.6 AEC family transporter compare
TX73_024405 -1.4 -6.0 amidohydrolase family protein compare
TX73_010335 -1.4 -10.8 ABC transporter ATP-binding protein/permease compare
TX73_018405 -1.3 -5.3 SDR family oxidoreductase compare
TX73_024410 -1.3 -5.5 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase compare
TX73_024400 -1.3 -7.8 4-oxalomesaconate tautomerase compare
TX73_019100 -1.3 -6.5 C40 family peptidase compare
TX73_002680 -1.2 -7.4 Fur family transcriptional regulator compare
TX73_020010 -1.2 -6.3 hypothetical protein compare
TX73_018175 -1.2 -7.1 ABC transporter ATP-binding protein compare
TX73_022865 -1.2 -7.4 DeoR/GlpR family DNA-binding transcription regulator compare
TX73_018725 -1.1 -7.9 3-mercaptopyruvate sulfurtransferase compare
TX73_019535 -1.0 -5.4 DUF6489 family protein compare
TX73_018370 -1.0 -5.5 TetR/AcrR family transcriptional regulator compare
TX73_015730 -1.0 -7.1 dihydrofolate reductase compare
TX73_010360 +1.0 8.7 flagellar motor protein MotB compare
TX73_003680 +1.1 9.1 5,6-dimethylbenzimidazole synthase compare
TX73_004845 +1.3 11.5 fructose-bisphosphate aldolase class I compare
TX73_018770 +1.3 8.6 hypothetical protein compare
TX73_013365 +1.3 11.3 DUF2497 domain-containing protein compare
TX73_015780 +1.5 11.9 CDP-alcohol phosphatidyltransferase family protein compare
TX73_016320 +1.5 8.2 hypothetical protein compare
TX73_020375 +1.5 13.7 flagellar hook-associated protein FlgK compare
TX73_019330 +1.6 10.7 aminobacteriohopanetriol synthase HpnO compare
TX73_013040 +1.6 14.2 cold-shock protein compare
TX73_006690 +1.7 13.0 flagellar hook capping FlgD N-terminal domain-containing protein compare
TX73_020165 +1.8 9.6 flagellar biosynthetic protein FliO compare
TX73_008135 +1.8 11.4 YcjX family protein compare
TX73_020275 +1.9 12.6 hypothetical protein compare
TX73_024615 +2.0 17.5 zinc-ribbon domain-containing protein compare
TX73_019055 +2.1 9.6 Flp pilus assembly protein CpaB compare
TX73_025010 +2.3 11.2 MAPEG family protein compare
TX73_020370 +2.5 22.3 flagellar biosynthesis protein FlgL compare
TX73_004195 +2.5 17.3 hypothetical protein compare
TX73_020135 +2.6 17.0 flagellar biosynthesis protein FlhB compare
TX73_005845 +2.6 24.3 NAD(P)-binding protein compare
TX73_020230 +2.6 19.1 flagellar basal body L-ring protein FlgH compare
TX73_017520 +2.6 21.0 transglycosylase SLT domain-containing protein compare
TX73_020200 +2.7 13.0 DUF6468 domain-containing protein compare
TX73_017690 +2.8 20.8 transglutaminase-like cysteine peptidase compare
TX73_020145 +2.8 26.8 flagellar biosynthesis protein FliQ compare
TX73_020140 +2.9 27.1 flagellar biosynthetic protein FliR compare
TX73_020150 +3.0 26.1 flagellar hook-basal body complex protein FliE compare
TX73_006510 +3.1 27.5 sigma-54 dependent transcriptional regulator compare
TX73_000885 +3.1 29.8 divergent polysaccharide deacetylase family protein compare
TX73_020160 +3.1 25.8 flagellar basal body rod protein FlgB compare
TX73_020195 +3.2 29.2 flagellar protein FlbB compare
TX73_020175 +3.2 30.5 tetratricopeptide repeat protein compare
TX73_020210 +3.2 22.1 flagellar basal body-associated protein FliL compare
TX73_006695 +3.3 31.5 flagellar hook-length control protein FliK compare
TX73_010355 +3.3 28.2 MotA/TolQ/ExbB proton channel family protein compare
TX73_020285 +3.3 30.8 flagellar biosynthesis regulator FlaF compare
TX73_020225 +3.3 30.7 flagellar basal body P-ring formation chaperone FlgA compare
TX73_020380 +3.4 30.0 flagellar hook-basal body complex protein compare
TX73_020260 +3.4 28.7 flagellar assembly protein FliX compare
TX73_015760 +3.4 31.5 bestrophin family protein compare
TX73_020265 +3.6 34.3 flagellar basal body P-ring protein FlgI compare
TX73_020270 +3.6 22.4 flagellar assembly peptidoglycan hydrolase FlgJ compare
TX73_012655 +3.6 7.4 biotin transporter BioY compare
TX73_020215 +3.9 38.2 flagellar basal-body rod protein FlgF compare


Specific phenotypes for carbon source dark aerobic Sodium succinate dibasic hexahydrate across organisms