Experiment set2S434 for Phocaeicola vulgatus CL09T03C04

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Galactose 1-phosphate dipotassium salt pentahydrate carbon source

Group: carbon source
Media: Varel_Bryant_medium + Galactose 1-phosphate dipotassium salt pentahydrate (20 mM)
Culturing: Bvulgatus_CL09T03C04_ML5, 24-well microplate; 1.2 mL volume, Anaerobic, at 34 (C), shaken=0 rpm
By: Surya Tripathi on 3-Jul-23
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)

Specific Phenotypes

For 12 genes in this experiment

For carbon source Galactose 1-phosphate dipotassium salt pentahydrate in Phocaeicola vulgatus CL09T03C04

For carbon source Galactose 1-phosphate dipotassium salt pentahydrate across organisms

SEED Subsystems

Subsystem #Specific
Chitin and N-acetylglucosamine utilization 1
N-Acetyl-Galactosamine and Galactosamine Utilization 1
Phosphate metabolism 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
diethylphosphate degradation 2 1 1
chitin degradation II (Vibrio) 6 3 2
pyruvate-derived opine biosynthesis I (bacteria) 3 1 1
pyruvate-derived opine biosynthesis II (marine invertebrates) 5 1 1
chitin degradation III (Serratia) 7 3 1
peptidoglycan recycling II 10 2 1
peptidoglycan recycling I 14 6 1