Experiment set2S429 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Glucose-6-Phosphate sodium salt carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS14270 +2.8 23.4 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS12035 +1.3 9.1 phosphate butyryltransferase compare
HMPREF1058_RS03980 +1.2 3.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS14130 +1.2 5.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS02620 +1.1 7.9 [FeFe] hydrogenase H-cluster radical SAM maturase HydG compare
HMPREF1058_RS02780 +1.1 9.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS03215 +1.1 8.2 AhpC/TSA family protein compare
HMPREF1058_RS14680 +1.1 7.1 homoserine O-succinyltransferase compare
HMPREF1058_RS08615 +1.1 8.3 RluA family pseudouridine synthase compare
HMPREF1058_RS02610 +1.0 8.4 4Fe-4S dicluster domain-containing protein compare
HMPREF1058_RS12805 +1.0 6.5 RNA polymerase sigma factor compare
HMPREF1058_RS21520 +1.0 1.7 hypothetical protein compare
HMPREF1058_RS02625 +1.0 7.1 [FeFe] hydrogenase H-cluster maturation GTPase HydF compare
HMPREF1058_RS02775 +1.0 8.8 response regulator compare
HMPREF1058_RS11315 +1.0 7.4 tRNA pseudouridine(55) synthase TruB compare
HMPREF1058_RS09990 +0.9 6.8 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS16775 +0.9 5.2 tRNA pseudouridine(38-40) synthase TruA compare
HMPREF1058_RS02785 +0.9 4.3 hypothetical protein compare
HMPREF1058_RS00245 +0.9 4.7 DUF5110 domain-containing protein compare
HMPREF1058_RS14605 +0.9 1.7 transcriptional repressor compare
HMPREF1058_RS18660 +0.9 2.1 hypothetical protein compare
HMPREF1058_RS14835 +0.9 4.1 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS00600 +0.8 5.8 diaminopimelate dehydrogenase compare
HMPREF1058_RS02615 +0.8 5.1 [FeFe] hydrogenase H-cluster radical SAM maturase HydE compare
HMPREF1058_RS05790 +0.8 1.9 hypothetical protein compare
HMPREF1058_RS03130 +0.8 4.2 DUF177 domain-containing protein compare
HMPREF1058_RS07735 +0.8 2.9 chloride channel protein compare
HMPREF1058_RS07960 +0.8 6.9 response regulator compare
HMPREF1058_RS09440 +0.8 3.5 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS14915 +0.8 5.1 N-acetyltransferase compare
HMPREF1058_RS20985 +0.8 1.6 tyrosine-type recombinase/integrase compare
HMPREF1058_RS12065 +0.7 1.7 DUF4491 family protein compare
HMPREF1058_RS16935 +0.7 4.1 hypothetical protein compare
HMPREF1058_RS09775 +0.7 1.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS10500 +0.7 3.0 HU family DNA-binding protein compare
HMPREF1058_RS01605 +0.7 5.2 MBL fold metallo-hydrolase compare
HMPREF1058_RS01240 +0.7 5.8 DEAD/DEAH box helicase compare
HMPREF1058_RS15740 +0.7 4.0 hypothetical protein compare
HMPREF1058_RS03135 +0.7 1.9 5S ribosomal RNA compare
HMPREF1058_RS01665 +0.7 1.8 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS04970 +0.7 2.9 hypothetical protein compare
HMPREF1058_RS18565 +0.7 1.1 hypothetical protein compare
HMPREF1058_RS03890 +0.7 5.5 phosphatidylinositol-4-phosphate 5-kinase compare
HMPREF1058_RS05940 +0.7 3.9 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS18235 +0.7 3.2 3'-5' exonuclease compare
HMPREF1058_RS01995 +0.7 1.4 hypothetical protein compare
HMPREF1058_RS15795 +0.7 4.9 TolC family protein compare
HMPREF1058_RS21475 +0.7 0.9 smalltalk protein compare
HMPREF1058_RS01615 +0.7 0.8 tRNA-Lys compare
HMPREF1058_RS10945 +0.7 4.8 tRNA dihydrouridine synthase DusB compare
HMPREF1058_RS18895 +0.7 1.1 hypothetical protein compare
HMPREF1058_RS05885 +0.6 4.5 3'-5' exonuclease domain-containing protein 2 compare
HMPREF1058_RS13085 +0.6 2.9 HU family DNA-binding protein compare
HMPREF1058_RS06585 +0.6 2.4 PstS family phosphate ABC transporter substrate-binding protein compare
HMPREF1058_RS13910 +0.6 2.5 nucleoside deaminase compare
HMPREF1058_RS16805 +0.6 3.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS10175 +0.6 1.7 hypothetical protein compare
HMPREF1058_RS12810 +0.6 2.5 VanZ family protein compare
HMPREF1058_RS18795 +0.6 3.3 DUF3298 and DUF4163 domain-containing protein compare
HMPREF1058_RS21730 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS13905 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS00435 +0.6 3.1 zeta toxin family protein compare
HMPREF1058_RS01075 +0.5 1.8 site-specific integrase compare
HMPREF1058_RS06805 +0.5 2.7 endonuclease/exonuclease/phosphatase family protein compare
HMPREF1058_RS12990 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS05695 +0.5 2.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS07845 +0.5 2.4 S26 family signal peptidase compare
HMPREF1058_RS10055 +0.5 4.3 translational GTPase TypA compare
HMPREF1058_RS14065 +0.5 3.7 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS03540 +0.5 1.6 sensor histidine kinase compare
HMPREF1058_RS18790 +0.5 2.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
HMPREF1058_RS16920 +0.5 2.6 nucleoside triphosphate pyrophosphohydrolase compare
HMPREF1058_RS04700 +0.5 2.8 RNA-binding S4 domain-containing protein compare
HMPREF1058_RS05415 +0.5 1.7 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS16235 +0.5 3.7 AMP-binding protein compare
HMPREF1058_RS01085 +0.5 2.6 DUF134 domain-containing protein compare
HMPREF1058_RS03050 +0.5 1.0 hypothetical protein compare
HMPREF1058_RS04445 +0.5 1.0 porin family protein compare
HMPREF1058_RS09980 +0.5 1.1 PcfK-like family protein compare
HMPREF1058_RS12200 +0.5 2.9 CvpA family protein compare
HMPREF1058_RS10510 +0.5 2.3 virulence RhuM family protein compare
HMPREF1058_RS06045 +0.5 3.1 large-conductance mechanosensitive channel protein MscL compare
HMPREF1058_RS03765 +0.5 3.2 trimeric intracellular cation channel family protein compare
HMPREF1058_RS21635 +0.5 1.0 transcriptional regulator compare
HMPREF1058_RS16770 +0.5 2.2 hypothetical protein compare
HMPREF1058_RS14690 +0.5 3.6 zinc ribbon domain-containing protein compare
HMPREF1058_RS03185 +0.5 3.2 V-type ATP synthase subunit B compare
HMPREF1058_RS20500 +0.5 2.2 YbaN family protein compare
HMPREF1058_RS17535 +0.5 0.9 IS21-like element helper ATPase IstB compare
HMPREF1058_RS02975 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS14750 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS16245 +0.5 2.4 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS14985 +0.5 1.8 DUF2149 domain-containing protein compare
HMPREF1058_RS18685 +0.5 2.5 F0F1 ATP synthase subunit delta compare
HMPREF1058_RS02485 +0.5 2.9 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS17300 +0.5 3.1 putative colanic acid biosynthesis acetyltransferase compare
HMPREF1058_RS17285 +0.4 3.2 glycosyltransferase compare
HMPREF1058_RS12895 +0.4 3.4 signal peptide peptidase SppA compare
HMPREF1058_RS21720 +0.4 2.0 ribonucleoside-triphosphate reductase compare
HMPREF1058_RS16465 +0.4 2.8 transcriptional repressor compare
HMPREF1058_RS11800 +0.4 2.1 carbohydrate kinase compare
HMPREF1058_RS01630 +0.4 3.2 hypothetical protein compare
HMPREF1058_RS21590 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS00440 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS10230 +0.4 0.7 hypothetical protein compare
HMPREF1058_RS14120 +0.4 3.0 DUF349 domain-containing protein compare
HMPREF1058_RS01285 +0.4 1.6 alpha-ribazole phosphatase compare
HMPREF1058_RS15010 +0.4 3.4 dicarboxylate/amino acid:cation symporter compare
HMPREF1058_RS15330 +0.4 1.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03195 +0.4 2.9 V-type ATP synthase subunit I compare
HMPREF1058_RS03710 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS07875 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS04270 +0.4 0.8 ferredoxin compare
HMPREF1058_RS16240 +0.4 1.3 o-succinylbenzoate synthase compare
HMPREF1058_RS10455 +0.4 2.8 glycine C-acetyltransferase compare
HMPREF1058_RS14510 +0.4 2.6 threonylcarbamoyl-AMP synthase compare
HMPREF1058_RS03690 +0.4 2.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS06850 +0.4 2.6 hypothetical protein compare
HMPREF1058_RS17170 +0.4 2.8 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS01205 +0.4 1.3 methyltransferase compare
HMPREF1058_RS02145 +0.4 1.8 hypothetical protein compare
HMPREF1058_RS21005 +0.4 1.5 nitrous oxide-stimulated promoter family protein compare
HMPREF1058_RS17195 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS16115 +0.4 2.3 polysaccharide export protein compare
HMPREF1058_RS01450 +0.4 1.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
HMPREF1058_RS14160 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS11990 +0.4 2.2 MarR family transcriptional regulator compare
HMPREF1058_RS12815 +0.4 3.3 sodium-dependent transporter compare
HMPREF1058_RS12800 +0.4 3.2 TonB-dependent receptor compare
HMPREF1058_RS04580 +0.4 0.8 hypothetical protein compare
HMPREF1058_RS01845 +0.4 1.0 site-specific integrase compare
HMPREF1058_RS04605 +0.4 0.7 HNH endonuclease compare
HMPREF1058_RS16830 +0.4 1.8 acyl-ACP thioesterase compare
HMPREF1058_RS18890 +0.4 1.2 DUF3127 domain-containing protein compare
HMPREF1058_RS13245 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS16630 +0.4 1.5 DMP19 family protein compare
HMPREF1058_RS02550 +0.4 2.4 NUDIX domain-containing protein compare
HMPREF1058_RS17755 +0.4 1.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS01725 +0.4 1.9 peptide MFS transporter compare
HMPREF1058_RS11950 +0.4 1.9 HAD family phosphatase compare
HMPREF1058_RS04715 +0.4 2.2 PUR family DNA/RNA-binding protein compare
HMPREF1058_RS16485 +0.4 2.8 cyclomaltodextrinase C-terminal domain-containing protein compare
HMPREF1058_RS0120000 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS09185 +0.4 1.8 DUF4252 domain-containing protein compare
HMPREF1058_RS16395 +0.4 1.8 TrkA family potassium uptake protein compare
HMPREF1058_RS18005 +0.4 1.8 anaerobic C4-dicarboxylate transporter compare
HMPREF1058_RS02480 +0.4 2.2 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS15580 +0.4 2.3 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1058_RS03770 +0.4 2.3 RNA polymerase sigma factor compare
HMPREF1058_RS10460 +0.4 3.2 NAD-dependent epimerase/dehydratase family protein compare
HMPREF1058_RS14050 +0.4 2.2 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS03170 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS13200 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS04095 +0.4 1.8 30S ribosomal protein S12 methylthiotransferase RimO compare
HMPREF1058_RS08520 +0.4 1.1 DUF59 domain-containing protein compare
HMPREF1058_RS17640 +0.4 2.8 L-lactate permease compare
HMPREF1058_RS12705 +0.4 2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS18570 +0.4 1.6 GNAT family N-acetyltransferase compare
HMPREF1058_RS14685 +0.4 2.8 U32 family peptidase compare
HMPREF1058_RS15755 +0.4 2.3 HlyD family efflux transporter periplasmic adaptor subunit compare
HMPREF1058_RS12495 +0.4 1.6 glycine cleavage system protein GcvH compare
HMPREF1058_RS07965 +0.4 2.4 chromate transporter compare
HMPREF1058_RS07000 +0.4 2.4 DNA/RNA non-specific endonuclease compare
HMPREF1058_RS14140 +0.3 2.1 aminoacyl-histidine dipeptidase compare
HMPREF1058_RS15525 +0.3 1.0 hypothetical protein compare
HMPREF1058_RS10290 +0.3 1.9 hypothetical protein compare
HMPREF1058_RS17665 +0.3 1.1 hypothetical protein compare
HMPREF1058_RS16275 +0.3 2.3 FAD-dependent oxidoreductase compare
HMPREF1058_RS16310 +0.3 2.1 hypothetical protein compare
HMPREF1058_RS08485 +0.3 2.8 GNAT family N-acetyltransferase compare
HMPREF1058_RS02005 +0.3 1.6 hypothetical protein compare
HMPREF1058_RS10825 +0.3 2.2 glycosyltransferase family 9 protein compare
HMPREF1058_RS07465 +0.3 0.8 S26 family signal peptidase compare
HMPREF1058_RS03450 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS15300 +0.3 1.5 DUF3575 domain-containing protein compare
HMPREF1058_RS08945 +0.3 2.0 FecR domain-containing protein compare
HMPREF1058_RS11915 +0.3 0.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS08285 +0.3 1.4 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS04555 +0.3 1.4 YqaJ viral recombinase family protein compare
HMPREF1058_RS09455 +0.3 2.8 aminopeptidase P family protein compare
HMPREF1058_RS18820 +0.3 1.6 PepSY-like domain-containing protein compare
HMPREF1058_RS18850 +0.3 1.6 hypothetical protein compare
HMPREF1058_RS06785 +0.3 2.1 glycosyltransferase family 4 protein compare
HMPREF1058_RS15305 +0.3 2.4 hypothetical protein compare
HMPREF1058_RS00630 +0.3 2.1 carbohydrate kinase compare
HMPREF1058_RS12600 +0.3 1.9 hypothetical protein compare
HMPREF1058_RS07365 +0.3 1.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS20715 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS03180 +0.3 2.2 V-type ATP synthase subunit A compare
HMPREF1058_RS14950 +0.3 2.1 helix-turn-helix domain-containing protein compare
HMPREF1058_RS0119435 +0.3 1.9 IS982 family transposase compare
HMPREF1058_RS10200 +0.3 1.1 hypothetical protein compare
HMPREF1058_RS21310 +0.3 0.8 hypothetical protein compare
HMPREF1058_RS03630 +0.3 1.6 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS05440 +0.3 1.2 ferritin compare
HMPREF1058_RS05660 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS13220 +0.3 1.4 hypothetical protein compare
HMPREF1058_RS15910 +0.3 1.6 thioredoxin compare
HMPREF1058_RS05355 +0.3 1.1 helix-turn-helix domain-containing protein compare
HMPREF1058_RS05935 +0.3 1.9 bifunctional nuclease family protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Glucose-6-Phosphate sodium salt in Phocaeicola vulgatus CL09T03C04

For carbon source D-Glucose-6-Phosphate sodium salt across organisms