Experiment set2S428 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Glucose-6-Phosphate sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS09675 -7.8 -5.4 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS11730 -6.8 -4.7 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS07200 -6.5 -8.9 tryptophan synthase subunit alpha compare
HMPREF1058_RS08840 -6.5 -10.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS14545 -6.2 -11.2 2-isopropylmalate synthase compare
HMPREF1058_RS08650 -6.2 -9.4 glutamate 5-kinase compare
HMPREF1058_RS14770 -6.1 -8.4 prephenate dehydrogenase compare
HMPREF1058_RS12490 -5.9 -4.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS06180 -5.9 -7.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS15870 -5.9 -9.0 ATP phosphoribosyltransferase compare
HMPREF1058_RS12780 -5.8 -11.8 M20 family metallo-hydrolase compare
HMPREF1058_RS03290 -5.8 -4.0 thiamine phosphate synthase compare
HMPREF1058_RS14725 -5.7 -11.0 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS08850 -5.7 -11.6 N-acetyltransferase compare
HMPREF1058_RS08645 -5.7 -13.2 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS14505 -5.7 -3.9 mechanosensitive ion channel compare
HMPREF1058_RS14920 -5.7 -12.7 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS07190 -5.7 -6.7 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS07175 -5.6 -12.0 anthranilate synthase component I family protein compare
HMPREF1058_RS12115 -5.6 -11.4 acetylglutamate kinase compare
HMPREF1058_RS08025 -5.6 -7.7 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS06195 -5.6 -6.7 diaminopimelate decarboxylase compare
HMPREF1058_RS14785 -5.5 -8.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS08830 -5.5 -9.2 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS16835 -5.5 -6.6 ketol-acid reductoisomerase compare
HMPREF1058_RS09585 -5.5 -19.5 argininosuccinate lyase compare
HMPREF1058_RS15075 -5.5 -11.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS14720 -5.5 -18.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS15885 -5.5 -9.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14550 -5.5 -13.6 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS07185 -5.4 -11.0 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS16760 -5.4 -3.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS15880 -5.4 -11.0 histidinol-phosphate transaminase compare
HMPREF1058_RS17935 -5.4 -11.0 glycosyltransferase compare
HMPREF1058_RS14565 -5.4 -15.4 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS08845 -5.4 -10.3 argininosuccinate synthase compare
HMPREF1058_RS07170 -5.4 -11.5 tryptophan synthase subunit beta compare
HMPREF1058_RS14790 -5.4 -12.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14730 -5.4 -12.4 threonine synthase compare
HMPREF1058_RS07955 -5.3 -15.1 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS14610 -5.3 -16.8 adenylosuccinate synthase compare
HMPREF1058_RS14560 -5.3 -13.3 2-isopropylmalate synthase compare
HMPREF1058_RS10075 -5.3 -14.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS17940 -5.3 -7.2 alpha-amylase compare
HMPREF1058_RS08545 -5.3 -17.8 ATPase compare
HMPREF1058_RS10995 -5.2 -8.7 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS14555 -5.2 -3.6 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS12105 -5.1 -6.1 shikimate kinase compare
HMPREF1058_RS14795 -5.1 -6.9 prephenate dehydratase compare
HMPREF1058_RS16815 -5.0 -14.2 dihydroxy-acid dehydratase compare
HMPREF1058_RS16820 -5.0 -11.6 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS15875 -5.0 -11.1 histidinol dehydrogenase compare
HMPREF1058_RS03000 -4.9 -8.9 IMP dehydrogenase compare
HMPREF1058_RS03075 -4.9 -5.8 DNA helicase RecQ compare
HMPREF1058_RS12110 -4.9 -16.2 biosynthetic arginine decarboxylase compare
HMPREF1058_RS03800 -4.9 -9.9 serine hydroxymethyltransferase compare
HMPREF1058_RS08325 -4.9 -8.1 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS08555 -4.9 -25.6 hypothetical protein compare
HMPREF1058_RS06165 -4.8 -8.6 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS03910 -4.8 -7.3 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS08640 -4.8 -4.2 acetylornithine carbamoyltransferase compare
HMPREF1058_RS13795 -4.7 -10.9 DUF4954 family protein compare
HMPREF1058_RS10080 -4.7 -17.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS06175 -4.7 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS06225 -4.6 -4.5 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS10820 -4.6 -17.1 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS06190 -4.5 -5.4 aspartate kinase compare
HMPREF1058_RS11270 -4.5 -12.8 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS04080 -4.5 -3.1 AAA family ATPase compare
HMPREF1058_RS02115 -4.5 -11.9 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS08835 -4.4 -10.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS02755 -4.4 -9.4 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS07440 -4.4 -7.9 aspartate--ammonia ligase compare
HMPREF1058_RS08855 -4.4 -9.4 arginine repressor compare
HMPREF1058_RS16730 -4.4 -3.0 chorismate synthase compare
HMPREF1058_RS07195 -4.3 -4.7 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS03295 -4.3 -2.7 sulfur carrier protein ThiS compare
HMPREF1058_RS03285 -4.3 -9.1 thiazole synthase compare
HMPREF1058_RS04295 -4.3 -5.1 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS17885 -4.2 -18.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS02750 -4.2 -9.0 BamA/TamA family outer membrane protein compare
HMPREF1058_RS02220 -4.2 -5.0 branched-chain amino acid aminotransferase compare
HMPREF1058_RS15665 -4.2 -6.4 MFS transporter compare
HMPREF1058_RS16825 -4.1 -9.0 acetolactate synthase small subunit compare
HMPREF1058_RS03265 -4.1 -15.2 2-iminoacetate synthase ThiH compare
HMPREF1058_RS17035 -4.1 -9.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS11205 -4.1 -2.8 radical SAM protein compare
HMPREF1058_RS06170 -4.0 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS17155 -4.0 -6.1 dCMP deaminase family protein compare
HMPREF1058_RS16750 -4.0 -2.8 shikimate dehydrogenase compare
HMPREF1058_RS00560 -4.0 -3.9 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS13970 -3.9 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS03245 -3.9 -2.7 thiamine phosphate synthase compare
HMPREF1058_RS03970 -3.9 -2.7 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS06820 -3.9 -13.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS04065 -3.8 -3.7 VWA domain-containing protein compare
HMPREF1058_RS04075 -3.8 -2.6 DUF58 domain-containing protein compare
HMPREF1058_RS08550 -3.8 -12.0 phosphatase PAP2 family protein compare
HMPREF1058_RS16845 -3.8 -6.3 SurA N-terminal domain-containing protein compare
HMPREF1058_RS04070 -3.7 -3.6 hypothetical protein compare
HMPREF1058_RS07180 -3.7 -7.1 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS15395 -3.6 -2.5 dihydroorotase compare
HMPREF1058_RS04300 -3.5 -7.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS03535 -3.5 -2.4 UvrD-helicase domain-containing protein compare
HMPREF1058_RS14005 -3.5 -2.4 3-dehydroquinate synthase compare
HMPREF1058_RS03260 -3.4 -10.2 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS17060 -3.4 -8.8 HAD family hydrolase compare
HMPREF1058_RS01650 -3.2 -7.6 hypothetical protein compare
HMPREF1058_RS04050 -3.2 -3.7 protein BatD compare
HMPREF1058_RS14590 -3.1 -2.2 AraC family transcriptional regulator compare
HMPREF1058_RS11040 -3.1 -6.6 polysaccharide deacetylase family protein compare
HMPREF1058_RS05140 -3.0 -2.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS18265 -3.0 -4.9 aspartate 1-decarboxylase compare
HMPREF1058_RS17130 -2.9 -2.8 tetratricopeptide repeat protein compare
HMPREF1058_RS02110 -2.9 -16.6 NADP-dependent malic enzyme compare
HMPREF1058_RS15975 -2.9 -9.0 saccharopine dehydrogenase family protein compare
HMPREF1058_RS03280 -2.8 -10.9 phosphomethylpyrimidine synthase ThiC compare
HMPREF1058_RS03085 -2.8 -3.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS04045 -2.8 -6.8 tetratricopeptide repeat protein compare
HMPREF1058_RS11375 -2.7 -1.6 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS03310 -2.7 -10.3 carboxynorspermidine decarboxylase compare
HMPREF1058_RS06560 -2.6 -9.0 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS17045 -2.6 -5.1 hypothetical protein compare
HMPREF1058_RS14930 -2.5 -10.3 AraC family transcriptional regulator compare
HMPREF1058_RS11490 -2.5 -6.3 redox-regulated ATPase YchF compare
HMPREF1058_RS04375 -2.5 -7.5 carbon-nitrogen hydrolase compare
HMPREF1058_RS08535 -2.4 -4.3 elongation factor P compare
HMPREF1058_RS03530 -2.4 -2.8 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS05145 -2.4 -7.9 ATP-binding protein compare
HMPREF1058_RS06160 -2.4 -6.9 formyltetrahydrofolate deformylase compare
HMPREF1058_RS17050 -2.4 -8.8 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS00590 -2.3 -5.9 hypothetical protein compare
HMPREF1058_RS11890 -2.3 -5.0 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS00595 -2.2 -4.1 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS01745 -2.2 -6.2 PorT family protein compare
HMPREF1058_RS17080 -2.1 -3.9 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS17205 -2.1 -2.8 DUF4199 domain-containing protein compare
HMPREF1058_RS09610 -2.1 -8.4 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS11310 -2.1 -6.4 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS06080 -2.1 -7.0 glutamine synthetase III compare
HMPREF1058_RS17040 -2.1 -5.6 NTP transferase domain-containing protein compare
HMPREF1058_RS08295 -2.0 -7.7 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS16505 -2.0 -8.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS20295 -2.0 -1.7 hypothetical protein compare
HMPREF1058_RS00565 -2.0 -10.0 hemolysin III family protein compare
HMPREF1058_RS02135 -2.0 -14.4 phosphoenolpyruvate synthase compare
HMPREF1058_RS05805 -2.0 -12.3 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
HMPREF1058_RS16625 -2.0 -8.9 hypothetical protein compare
HMPREF1058_RS03510 -1.9 -6.3 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS16500 -1.9 -6.3 OadG family protein compare
HMPREF1058_RS14035 -1.9 -2.5 hypothetical protein compare
HMPREF1058_RS02170 -1.9 -8.2 hypothetical protein compare
HMPREF1058_RS11535 -1.9 -8.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS07040 -1.8 -9.7 tetratricopeptide repeat protein compare
HMPREF1058_RS17985 -1.8 -8.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS09680 -1.8 -4.7 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS01800 -1.8 -4.8 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS16620 -1.8 -8.4 GGGtGRT protein compare
HMPREF1058_RS14215 -1.7 -4.8 (d)CMP kinase compare
HMPREF1058_RS09970 -1.7 -1.7 hypothetical protein compare
HMPREF1058_RS16510 -1.7 -3.0 methylmalonyl-CoA epimerase compare
HMPREF1058_RS01265 -1.7 -3.9 FHA domain-containing protein compare
HMPREF1058_RS15435 -1.7 -8.1 hypothetical protein compare
HMPREF1058_RS15375 -1.6 -1.8 DUF4369 domain-containing protein compare
HMPREF1058_RS15265 -1.5 -3.1 queuosine precursor transporter compare
HMPREF1058_RS16690 -1.5 -5.9 NTP transferase domain-containing protein compare
HMPREF1058_RS09445 -1.5 -2.6 tyrosine-type recombinase/integrase compare
HMPREF1058_RS10255 -1.5 -2.8 hypothetical protein compare
HMPREF1058_RS12070 -1.5 -3.5 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS00515 -1.5 -7.6 YicC family protein compare
HMPREF1058_RS05780 -1.5 -8.7 PD40 domain-containing protein compare
HMPREF1058_RS05925 -1.5 -2.0 DUF5024 domain-containing protein compare
HMPREF1058_RS04370 -1.4 -5.3 agmatine deiminase family protein compare
HMPREF1058_RS15920 -1.4 -2.5 hypothetical protein compare
HMPREF1058_RS17815 -1.4 -6.3 MFS transporter compare
HMPREF1058_RS10835 -1.4 -5.1 UDP-galactopyranose mutase compare
HMPREF1058_RS17950 -1.4 -5.8 biotin synthase BioB compare
HMPREF1058_RS09240 -1.4 -8.0 type I methionyl aminopeptidase compare
HMPREF1058_RS00700 -1.4 -8.1 DUF4831 family protein compare
HMPREF1058_RS07695 -1.4 -5.1 DUF4827 domain-containing protein compare
HMPREF1058_RS13735 -1.3 -3.9 hypothetical protein compare
HMPREF1058_RS10840 -1.3 -2.2 hypothetical protein compare
HMPREF1058_RS14200 -1.3 -9.4 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS17055 -1.3 -4.5 flippase-like domain-containing protein compare
HMPREF1058_RS10920 -1.3 -3.2 viroplasmin family protein compare
HMPREF1058_RS10955 -1.3 -5.5 phosphatase PAP2 family protein compare
HMPREF1058_RS02405 -1.3 -9.8 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS10720 -1.2 -4.1 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS08065 -1.2 -7.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS05755 -1.2 -6.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS02410 -1.2 -10.0 methylmalonyl-CoA mutase compare
HMPREF1058_RS11215 -1.2 -2.7 DUF4294 domain-containing protein compare
HMPREF1058_RS13730 -1.2 -3.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS17025 -1.2 -5.6 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
HMPREF1058_RS00140 -1.2 -6.7 L-rhamnose mutarotase compare
HMPREF1058_RS11940 -1.2 -2.2 DUF3836 domain-containing protein compare
HMPREF1058_RS16495 -1.2 -3.2 biotin/lipoyl-binding protein compare
HMPREF1058_RS19025 -1.2 -1.7 hypothetical protein compare
HMPREF1058_RS00710 -1.2 -3.5 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS12795 -1.1 -5.2 CYTH domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Glucose-6-Phosphate sodium salt in Phocaeicola vulgatus CL09T03C04

For carbon source D-Glucose-6-Phosphate sodium salt across organisms