Experiment set2S422 for Rhodopseudomonas palustris CGA009

Compare to:

Sodium 4-Hydroxybenzoate carbon source

200 most important genes:

  gene name fitness t score description  
TX73_005995 -5.7 -15.6 molybdenum cofactor biosynthesis protein MoaE compare
TX73_003385 -5.4 -7.4 2-ketocyclohexanecarboxyl-CoA hydrolase compare
TX73_005285 -5.4 -10.9 molybdenum cofactor biosynthesis protein B compare
TX73_003470 -5.3 -7.2 4-hydroxybenzoyl-CoA reductase subunit gamma compare
TX73_003440 -5.2 -10.3 GNAT family N-acetyltransferase compare
TX73_019665 -5.1 -7.8 XdhC family protein compare
TX73_023175 -5.1 -9.0 cytochrome c compare
TX73_019670 -5.0 -10.2 XdhC family protein compare
TX73_006000 -5.0 -3.8 molybdopterin converting factor subunit 1 compare
TX73_023190 -5.0 -8.3 thiosulfate oxidation carrier complex protein SoxZ compare
TX73_003420 -4.9 -17.2 benzoyl-CoA reductase subunit D compare
TX73_003410 -4.9 -10.9 benzoyl-CoA reductase subunit B compare
TX73_003405 -4.8 -9.8 benzoyl-CoA reductase subunit C compare
TX73_020255 -4.8 -3.3 RNA polymerase-binding protein DksA compare
TX73_003475 -4.6 -15.1 4-hydroxybenzoyl-CoA reductase subunit alpha compare
TX73_012970 -4.5 -15.7 FUSC family protein compare
TX73_010195 -4.5 -18.7 GTP 3',8-cyclase MoaA compare
TX73_002745 -4.5 -14.9 polyhydroxyalkanoate synthesis repressor PhaR compare
TX73_003480 -4.4 -10.2 4-hydroxybenzoyl-CoA reductase subunit beta compare
TX73_023195 -4.4 -8.4 thiosulfate oxidation carrier protein SoxY compare
TX73_003415 -4.4 -14.2 benzoyl-CoA reductase subunit A compare
TX73_015040 -4.3 -23.1 molybdopterin molybdotransferase MoeA compare
TX73_003510 -4.2 -17.3 NADPH-dependent glutamate synthase compare
TX73_014990 -4.2 -12.4 cyclic pyranopterin monophosphate synthase MoaC compare
TX73_023180 -4.2 -12.0 sulfite dehydrogenase compare
TX73_003390 -4.1 -10.1 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
TX73_022015 -4.1 -8.3 response regulator compare
TX73_023200 -4.1 -11.5 sulfur oxidation c-type cytochrome SoxA compare
TX73_003425 -4.0 -18.1 benzoate-CoA ligase family protein compare
TX73_023185 -4.0 -13.1 thiosulfohydrolase SoxB compare
TX73_023205 -3.9 -7.0 sulfur oxidation c-type cytochrome SoxX compare
TX73_021975 -3.9 -5.3 CBS domain-containing protein compare
TX73_005630 -3.8 -7.7 MBL fold metallo-hydrolase compare
TX73_023235 -3.8 -12.2 YeeE/YedE family protein compare
TX73_018930 -3.8 -3.6 sulfurtransferase TusA family protein compare
TX73_019660 -3.8 -9.7 molybdopterin-binding/glycosyltransferase family 2 protein compare
TX73_015245 -3.7 -2.7 NADH-quinone oxidoreductase subunit NuoI compare
TX73_003485 -3.7 -7.4 Crp/Fnr family transcriptional regulator compare
TX73_001320 -3.6 -16.5 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_023155 -3.6 -12.7 NAD(P)/FAD-dependent oxidoreductase compare
TX73_003400 -3.6 -9.8 zinc-binding dehydrogenase compare
TX73_005625 -3.5 -14.2 acyl-CoA dehydrogenase compare
TX73_010460 -3.5 -10.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
TX73_014020 -3.4 -14.0 Nramp family divalent metal transporter compare
TX73_024775 -3.3 -15.3 O-succinylhomoserine sulfhydrylase compare
TX73_018220 -3.3 -14.8 aminopeptidase P family protein compare
TX73_012525 -3.3 -5.6 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_008350 -3.3 -9.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
TX73_001570 -3.2 -2.2 protein-export chaperone SecB compare
TX73_024505 -3.2 -10.7 molybdate ABC transporter substrate-binding protein compare
TX73_004435 -3.2 -6.5 metal ABC transporter substrate-binding protein compare
TX73_014750 -3.2 -4.4 Sec-independent protein translocase protein TatB compare
TX73_002300 -3.2 -4.8 helix-turn-helix domain-containing protein compare
TX73_019145 -3.2 -6.4 prephenate dehydratase compare
TX73_024675 -3.1 -2.0 FAD-binding protein compare
TX73_023220 -3.1 -10.9 cytochrome c biogenesis protein CcdA compare
TX73_013955 -3.1 -6.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
TX73_019240 -3.1 -9.6 pimeloyl-CoA dehydrogenase large subunit compare
TX73_018540 -3.0 -15.6 phosphomethylpyrimidine synthase ThiC compare
TX73_019235 -3.0 -9.7 pimeloyl-CoA dehydrogenase small subunit compare
TX73_024435 -2.9 -12.9 Gfo/Idh/MocA family oxidoreductase compare
TX73_005895 -2.8 -10.6 glycosyltransferase family 2 protein compare
TX73_014045 -2.8 -12.7 arginyltransferase compare
TX73_004430 -2.7 -6.4 metal ABC transporter permease compare
TX73_024500 -2.6 -7.8 molybdate ABC transporter permease subunit compare
TX73_003430 -2.6 -4.3 YfhL family 4Fe-4S dicluster ferredoxin compare
TX73_019180 -2.5 -2.4 methionine synthase compare
TX73_019175 -2.5 -3.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_016270 -2.5 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
TX73_018875 -2.5 -1.7 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_016275 -2.4 -6.5 ATP-dependent Clp protease adapter ClpS compare
TX73_015830 -2.3 -14.1 leucyl aminopeptidase compare
TX73_002350 -2.3 -13.9 NifU family protein compare
TX73_002315 -2.3 -6.7 rRNA maturation RNase YbeY compare
TX73_006140 -2.2 -14.7 SDR family NAD(P)-dependent oxidoreductase compare
TX73_001735 -2.1 -3.2 molecular chaperone DnaJ compare
TX73_000335 -2.1 -3.4 30S ribosomal protein S1 compare
TX73_009435 -2.1 -10.7 methylmalonyl-CoA mutase compare
TX73_009995 -2.1 -12.8 cation-efflux pump compare
TX73_024495 -2.1 -7.1 molybdenum ABC transporter ATP-binding protein compare
TX73_023225 -2.1 -5.2 thioredoxin fold domain-containing protein compare
TX73_018135 -2.0 -4.0 DUF4169 family protein compare
TX73_021845 -2.0 -2.4 DUF2849 domain-containing protein compare
TX73_002260 -2.0 -2.2 30S ribosome-binding factor RbfA compare
TX73_004425 -2.0 -8.6 zinc ABC transporter ATP-binding protein AztA compare
TX73_015770 -1.9 -13.9 RNA degradosome polyphosphate kinase compare
TX73_014855 -1.9 -14.3 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
TX73_021835 -1.9 -5.8 DUF934 domain-containing protein compare
TX73_013960 -1.9 -1.3 pyridoxine 5'-phosphate synthase compare
TX73_004665 -1.9 -14.9 N-formylglutamate amidohydrolase compare
TX73_005955 -1.9 -5.0 DUF2093 domain-containing protein compare
TX73_017750 -1.9 -5.7 zinc-finger domain-containing protein compare
TX73_008770 -1.9 -6.4 TetR family transcriptional regulator compare
TX73_018140 -1.9 -3.2 ribbon-helix-helix domain-containing protein compare
TX73_021840 -1.8 -6.3 nitrite/sulfite reductase compare
TX73_010270 -1.8 -2.3 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_013225 -1.8 -1.2 glycosyltransferase family 2 protein compare
TX73_000270 -1.8 -5.4 PTS IIA-like nitrogen regulatory protein PtsN compare
TX73_020630 -1.7 -8.2 lysylphosphatidylglycerol synthase transmembrane domain-containing protein compare
TX73_002205 -1.7 -11.1 Fur family transcriptional regulator compare
TX73_013215 -1.7 -1.9 glycosyltransferase family 39 protein compare
TX73_022005 -1.6 -7.2 PAS domain S-box protein compare
TX73_023110 -1.6 -3.4 pyridoxal-dependent decarboxylase compare
TX73_022105 -1.6 -12.4 long-chain fatty acid--CoA ligase compare
TX73_004840 -1.6 -5.6 thiamine phosphate synthase compare
TX73_000050 -1.6 -7.7 Lrp/AsnC family transcriptional regulator compare
TX73_007900 -1.6 -9.4 transcriptional regulator PpsR compare
TX73_005890 -1.6 -5.8 ChbG/HpnK family deacetylase compare
TX73_016020 -1.6 -1.5 tetratricopeptide repeat protein compare
TX73_005530 -1.6 -1.5 FAD-binding oxidoreductase compare
TX73_025025 -1.5 -11.2 molecular chaperone HtpG compare
TX73_025030 -1.5 -8.6 HAMP domain-containing sensor histidine kinase compare
TX73_000895 -1.5 -8.2 glycosyltransferase family 1 protein compare
TX73_023120 -1.5 -6.9 5-formyltetrahydrofolate cyclo-ligase compare
TX73_023115 -1.5 -5.8 TIGR00282 family metallophosphoesterase compare
TX73_014840 -1.5 -12.0 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase compare
TX73_009835 -1.5 -6.2 MarR family winged helix-turn-helix transcriptional regulator compare
TX73_021900 -1.5 -7.5 sigma-70 family RNA polymerase sigma factor compare
TX73_001550 -1.5 -9.4 kinase/pyrophosphorylase compare
TX73_024840 -1.5 -4.2 phosphate ABC transporter permease subunit PstC compare
TX73_021685 -1.5 -3.4 aa3-type cytochrome c oxidase subunit IV compare
TX73_002980 -1.4 -10.8 polyhydroxyalkanoate depolymerase compare
TX73_017175 -1.4 -9.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
TX73_014645 -1.4 -12.1 phytoene/squalene synthase family protein compare
TX73_018880 -1.4 -9.1 maltose alpha-D-glucosyltransferase compare
TX73_014850 -1.4 -10.2 pyruvate dehydrogenase complex E1 component subunit beta compare
TX73_001830 -1.4 -11.2 glycosyltransferase family 39 protein compare
TX73_003130 -1.4 -6.8 phosphoenolpyruvate--protein phosphotransferase compare
TX73_024110 -1.4 -1.7 transketolase compare
TX73_010175 -1.4 -8.9 Mrp/NBP35 family ATP-binding protein compare
TX73_014665 -1.4 -4.8 preprotein translocase subunit YajC compare
TX73_021000 -1.3 -7.7 NAD-dependent epimerase/dehydratase family protein compare
TX73_021890 -1.3 -8.5 response regulator compare
TX73_003880 -1.3 -4.4 phosphoadenylyl-sulfate reductase compare
TX73_012510 -1.3 -6.7 porin compare
TX73_004485 -1.3 -9.0 type III PLP-dependent enzyme compare
TX73_002155 -1.3 -4.2 YggT family protein compare
TX73_019780 -1.3 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
TX73_019590 -1.3 -7.7 glycosyltransferase family 2 protein compare
TX73_013095 -1.3 -7.9 glycosyltransferase family 4 protein compare
TX73_022860 -1.3 -2.0 glycerol-3-phosphate dehydrogenase compare
TX73_023170 -1.2 -6.7 YeeE/YedE family protein compare
TX73_000395 -1.2 -0.8 nucleotidyltransferase family protein compare
TX73_003225 -1.2 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
TX73_001350 -1.2 -2.5 HAMP domain-containing protein compare
TX73_024835 -1.2 -4.0 phosphate ABC transporter permease PstA compare
TX73_014835 -1.2 -9.8 dihydrolipoyl dehydrogenase compare
TX73_020625 -1.2 -2.4 NAD-dependent epimerase compare
TX73_002045 -1.2 -1.7 phosphatase PAP2 family protein compare
TX73_024830 -1.1 -1.8 phosphate ABC transporter ATP-binding protein PstB compare
TX73_009330 -1.1 -7.0 DUF1109 domain-containing protein compare
TX73_015855 -1.1 -1.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_012580 -1.1 -8.2 histidine kinase dimerization/phosphoacceptor domain -containing protein compare
TX73_002195 -1.1 -7.5 D-glycerate dehydrogenase compare
TX73_001535 -1.1 -9.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
TX73_006700 -1.1 -4.6 tRNA 2-thiouridine(34) synthase MnmA compare
TX73_005640 -1.0 -2.8 YebC/PmpR family DNA-binding transcriptional regulator compare
TX73_013800 -1.0 -3.4 succinate dehydrogenase assembly factor 2 compare
TX73_023355 -1.0 -6.0 hypothetical protein compare
TX73_003150 -1.0 -6.1 class I SAM-dependent methyltransferase compare
TX73_014710 -1.0 -7.1 5'/3'-nucleotidase SurE compare
TX73_009445 -1.0 -7.0 methylmalonyl-CoA mutase subunit beta compare
TX73_024230 -1.0 -0.9 trehalose-phosphatase compare
TX73_022895 -1.0 -8.2 ATP-binding protein compare
TX73_005330 -1.0 -1.1 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_024400 -1.0 -6.8 4-oxalomesaconate tautomerase compare
TX73_012670 -1.0 -4.7 Rne/Rng family ribonuclease compare
TX73_007620 -1.0 -6.1 alpha/beta fold hydrolase compare
TX73_008250 -1.0 -4.2 Grx4 family monothiol glutaredoxin compare
TX73_001000 -1.0 -8.2 cell division protein ZapE compare
TX73_014700 -1.0 -4.2 response regulator compare
TX73_009115 -1.0 -7.4 phosphoenolpyruvate carboxylase compare
TX73_003125 -0.9 -1.5 aspartate kinase compare
TX73_003890 -0.9 -6.9 adenylyl-sulfate kinase compare
TX73_019585 -0.9 -6.3 glycosyltransferase family 39 protein compare
TX73_008535 -0.9 -7.9 heavy metal translocating P-type ATPase compare
TX73_001260 -0.9 -1.4 ribosome maturation factor RimM compare
TX73_014770 -0.9 -7.4 beta-N-acetylhexosaminidase compare
TX73_022415 -0.9 -5.5 SulP family inorganic anion transporter compare
TX73_004855 -0.9 -2.9 antitoxin MazE family protein compare
TX73_003885 -0.9 -6.5 sulfate adenylyltransferase subunit 2 compare
TX73_010825 -0.9 -1.4 XapX domain-containing protein compare
TX73_010545 -0.9 -2.9 2-isopropylmalate synthase compare
TX73_024845 -0.9 -4.7 phosphate ABC transporter substrate-binding protein PstS compare
TX73_017170 -0.9 -5.0 phosphomannomutase/phosphoglucomutase compare
TX73_015240 -0.9 -1.7 NADH-quinone oxidoreductase subunit J compare
TX73_016180 -0.9 -1.1 50S ribosomal protein L33 compare
TX73_024750 -0.9 -4.4 tRNA-Gly compare
TX73_013740 -0.9 -2.1 light-harvesting protein compare
TX73_001835 -0.9 -3.4 HPr family phosphocarrier protein compare
TX73_020465 -0.8 -5.4 glycosyltransferase compare
TX73_012590 -0.8 -6.8 CHASE3 domain-containing protein compare
TX73_011335 -0.8 -5.1 RlmE family RNA methyltransferase compare
TX73_004200 -0.8 -5.8 TetR/AcrR family transcriptional regulator compare
TX73_002805 -0.8 -1.7 disulfide bond formation protein B compare
TX73_009990 -0.8 -0.9 ATP-binding protein compare
TX73_004475 -0.8 -1.2 hypothetical protein compare
TX73_001905 -0.8 -6.7 RluA family pseudouridine synthase compare
TX73_021450 -0.8 -6.2 phasin compare
TX73_024450 -0.8 -4.1 DedA family protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Sodium 4-Hydroxybenzoate in Rhodopseudomonas palustris CGA009

For carbon source Sodium 4-Hydroxybenzoate across organisms