(10 mM) + Light intensity (30 µmol photons/m2/s from a 60-W incandescent light bulb)
| Pathway | #Steps | #Present | #Specific |
|---|
| L-glutamate biosynthesis I | 2 | 2 | 2 |
| acetaldehyde biosynthesis I | 1 | 1 | 1 |
| L-glutamine degradation I | 1 | 1 | 1 |
| L-glutamine degradation II | 1 | 1 | 1 |
| sulfide oxidation II (flavocytochrome c) | 1 | 1 | 1 |
| benzoate degradation II (aerobic and anaerobic) | 1 | 1 | 1 |
| long-chain fatty acid activation | 1 | 1 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 2 |
| phytol degradation | 4 | 3 | 2 |
| linoleate biosynthesis II (animals) | 2 | 1 | 1 |
| γ-linolenate biosynthesis II (animals) | 2 | 1 | 1 |
| pyruvate fermentation to ethanol II | 2 | 1 | 1 |
| ethanol degradation I | 2 | 1 | 1 |
| gallate degradation II | 5 | 4 | 2 |
| adenosine nucleotides degradation II | 5 | 3 | 2 |
| methylgallate degradation | 6 | 6 | 2 |
| fatty acid salvage | 6 | 6 | 2 |
| benzoyl-CoA biosynthesis | 3 | 3 | 1 |
| acrylate degradation II | 3 | 3 | 1 |
| ethanol degradation II | 3 | 3 | 1 |
| stearate biosynthesis II (bacteria and plants) | 6 | 5 | 2 |
| stearate biosynthesis IV | 6 | 4 | 2 |
| L-valine degradation II | 3 | 2 | 1 |
| L-isoleucine degradation II | 3 | 2 | 1 |
| L-leucine degradation III | 3 | 2 | 1 |
| 3-methyl-branched fatty acid α-oxidation | 6 | 3 | 2 |
| L-methionine degradation III | 3 | 1 | 1 |
| pyruvate fermentation to ethanol I | 3 | 1 | 1 |
| pyruvate fermentation to ethanol III | 3 | 1 | 1 |
| oleate biosynthesis I (plants) | 3 | 1 | 1 |
| alkane biosynthesis II | 3 | 1 | 1 |
| palmitate biosynthesis II (type II fatty acid synthase) | 31 | 29 | 9 |
| L-glutamate and L-glutamine biosynthesis | 7 | 5 | 2 |
| superpathway of fatty acid biosynthesis II (plant) | 43 | 38 | 12 |
| palmitate biosynthesis III | 29 | 28 | 8 |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 12 | 12 | 3 |
| protocatechuate degradation I (meta-cleavage pathway) | 8 | 8 | 2 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 4 | 1 |
| gallate degradation I | 4 | 4 | 1 |
| gondoate biosynthesis (anaerobic) | 4 | 4 | 1 |
| inosine 5'-phosphate degradation | 4 | 3 | 1 |
| guanosine nucleotides degradation II | 4 | 3 | 1 |
| L-phenylalanine degradation III | 4 | 3 | 1 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 3 | 1 |
| guanosine nucleotides degradation III | 4 | 3 | 1 |
| adenosine nucleotides degradation I | 8 | 5 | 2 |
| phenol degradation II (anaerobic) | 4 | 2 | 1 |
| salidroside biosynthesis | 4 | 2 | 1 |
| L-tyrosine degradation III | 4 | 2 | 1 |
| guanosine nucleotides degradation I | 4 | 2 | 1 |
| phosphatidylcholine acyl editing | 4 | 1 | 1 |
| long chain fatty acid ester synthesis (engineered) | 4 | 1 | 1 |
| cytidine-5'-diphosphate-glycerol biosynthesis | 4 | 1 | 1 |
| wax esters biosynthesis II | 4 | 1 | 1 |
| superpathway of fatty acids biosynthesis (E. coli) | 53 | 49 | 13 |
| tetradecanoate biosynthesis (mitochondria) | 25 | 23 | 6 |
| palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) | 9 | 8 | 2 |
| benzoyl-CoA degradation III (anaerobic) | 9 | 7 | 2 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 9 | 4 | 2 |
| sporopollenin precursors biosynthesis | 18 | 4 | 4 |
| oleate biosynthesis IV (anaerobic) | 14 | 13 | 3 |
| 2-methyl-branched fatty acid β-oxidation | 14 | 10 | 3 |
| adipate biosynthesis | 5 | 5 | 1 |
| chorismate biosynthesis from 3-dehydroquinate | 5 | 5 | 1 |
| fatty acid elongation -- saturated | 5 | 5 | 1 |
| adipate degradation | 5 | 5 | 1 |
| superpathway of unsaturated fatty acids biosynthesis (E. coli) | 20 | 18 | 4 |
| oleate β-oxidation | 35 | 28 | 7 |
| superpathway of vanillin and vanillate degradation | 10 | 8 | 2 |
| 8-amino-7-oxononanoate biosynthesis IV | 5 | 4 | 1 |
| ethanolamine utilization | 5 | 4 | 1 |
| cis-vaccenate biosynthesis | 5 | 4 | 1 |
| pyruvate fermentation to isobutanol (engineered) | 5 | 4 | 1 |
| (S)-propane-1,2-diol degradation | 5 | 3 | 1 |
| glutaryl-CoA degradation | 5 | 3 | 1 |
| fatty acid β-oxidation II (plant peroxisome) | 5 | 3 | 1 |
| acrylate degradation I | 5 | 3 | 1 |
| acetylene degradation (anaerobic) | 5 | 3 | 1 |
| fatty acid β-oxidation IV (unsaturated, even number) | 5 | 3 | 1 |
| propanoyl-CoA degradation II | 5 | 3 | 1 |
| sphingosine and sphingosine-1-phosphate metabolism | 10 | 4 | 2 |
| phenylethanol biosynthesis | 5 | 2 | 1 |
| octane oxidation | 5 | 2 | 1 |
| cis-zeatin biosynthesis | 5 | 1 | 1 |
| protein O-mannosylation III (mammals, core M3) | 5 | 1 | 1 |
| protein O-mannosylation II (mammals, core M1 and core M2) | 5 | 1 | 1 |
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 5 | 1 | 1 |
| 8-amino-7-oxononanoate biosynthesis I | 11 | 9 | 2 |
| pyruvate fermentation to hexanol (engineered) | 11 | 7 | 2 |
| purine nucleotides degradation II (aerobic) | 11 | 7 | 2 |
| (8E,10E)-dodeca-8,10-dienol biosynthesis | 11 | 6 | 2 |
| anteiso-branched-chain fatty acid biosynthesis | 34 | 30 | 6 |
| odd iso-branched-chain fatty acid biosynthesis | 34 | 30 | 6 |
| even iso-branched-chain fatty acid biosynthesis | 34 | 30 | 6 |
| benzoate fermentation (to acetate and cyclohexane carboxylate) | 17 | 7 | 3 |
| (5Z)-dodecenoate biosynthesis I | 6 | 6 | 1 |
| 4-coumarate degradation (anaerobic) | 6 | 5 | 1 |
| (5Z)-dodecenoate biosynthesis II | 6 | 5 | 1 |
| syringate degradation | 12 | 8 | 2 |
| β-alanine biosynthesis II | 6 | 4 | 1 |
| L-isoleucine degradation I | 6 | 4 | 1 |
| pyruvate fermentation to butanol II (engineered) | 6 | 4 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 15 | 4 |
| purine nucleotides degradation I (plants) | 12 | 7 | 2 |
| propanoate fermentation to 2-methylbutanoate | 6 | 3 | 1 |
| 4-ethylphenol degradation (anaerobic) | 6 | 3 | 1 |
| superpathway of guanosine nucleotides degradation (plants) | 6 | 3 | 1 |
| 6-gingerol analog biosynthesis (engineered) | 6 | 3 | 1 |
| methyl ketone biosynthesis (engineered) | 6 | 3 | 1 |
| petroselinate biosynthesis | 6 | 2 | 1 |
| stearate biosynthesis I (animals) | 6 | 1 | 1 |
| noradrenaline and adrenaline degradation | 13 | 8 | 2 |
| superpathway of Clostridium acetobutylicum solventogenic fermentation | 13 | 4 | 2 |
| streptorubin B biosynthesis | 34 | 20 | 5 |
| chorismate biosynthesis I | 7 | 7 | 1 |
| 3-methylbutanol biosynthesis (engineered) | 7 | 6 | 1 |
| benzoyl-CoA degradation I (aerobic) | 7 | 5 | 1 |
| fatty acid β-oxidation I (generic) | 7 | 5 | 1 |
| pyruvate fermentation to butanoate | 7 | 4 | 1 |
| serotonin degradation | 7 | 4 | 1 |
| ureide biosynthesis | 7 | 3 | 1 |
| fatty acid β-oxidation VI (mammalian peroxisome) | 7 | 3 | 1 |
| ceramide degradation by α-oxidation | 7 | 2 | 1 |
| benzoyl-CoA degradation II (anaerobic) | 7 | 2 | 1 |
| icosapentaenoate biosynthesis III (8-desaturase, mammals) | 7 | 1 | 1 |
| caffeine degradation III (bacteria, via demethylation) | 7 | 1 | 1 |
| icosapentaenoate biosynthesis II (6-desaturase, mammals) | 7 | 1 | 1 |
| capsaicin biosynthesis | 7 | 1 | 1 |
| arachidonate biosynthesis III (6-desaturase, mammals) | 7 | 1 | 1 |
| biotin biosynthesis I | 15 | 13 | 2 |
| superpathway of fatty acid biosynthesis I (E. coli) | 16 | 16 | 2 |
| L-citrulline biosynthesis | 8 | 7 | 1 |
| L-valine degradation I | 8 | 6 | 1 |
| butanol and isobutanol biosynthesis (engineered) | 8 | 3 | 1 |
| pyruvate fermentation to butanol I | 8 | 3 | 1 |
| ceramide and sphingolipid recycling and degradation (yeast) | 16 | 4 | 2 |
| 2-allylmalonyl-CoA biosynthesis | 8 | 2 | 1 |
| 2-deoxy-D-ribose degradation II | 8 | 2 | 1 |
| protein O-mannosylation I (yeast) | 8 | 1 | 1 |
| superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation | 17 | 7 | 2 |
| 3-hydroxypropanoate/4-hydroxybutanate cycle | 18 | 12 | 2 |
| superpathway of Clostridium acetobutylicum acidogenic fermentation | 9 | 6 | 1 |
| phenylacetate degradation I (aerobic) | 9 | 5 | 1 |
| valproate β-oxidation | 9 | 5 | 1 |
| superpathway of purines degradation in plants | 18 | 8 | 2 |
| superpathway of fermentation (Chlamydomonas reinhardtii) | 9 | 4 | 1 |
| anaerobic aromatic compound degradation (Thauera aromatica) | 27 | 8 | 3 |
| toluene degradation VI (anaerobic) | 18 | 5 | 2 |
| theophylline degradation | 9 | 1 | 1 |
| superpathway of L-tyrosine biosynthesis | 10 | 10 | 1 |
| superpathway of L-phenylalanine biosynthesis | 10 | 10 | 1 |
| superpathway of coenzyme A biosynthesis II (plants) | 10 | 8 | 1 |
| L-glutamate degradation V (via hydroxyglutarate) | 10 | 4 | 1 |
| 3-phenylpropanoate degradation | 10 | 4 | 1 |
| suberin monomers biosynthesis | 20 | 3 | 2 |
| caffeine degradation IV (bacteria, via demethylation and oxidation) | 10 | 1 | 1 |
| superpathway of phenylethylamine degradation | 11 | 6 | 1 |
| gallate degradation III (anaerobic) | 11 | 3 | 1 |
| Spodoptera littoralis pheromone biosynthesis | 22 | 4 | 2 |
| protein N-glycosylation (Haloferax volcanii) | 11 | 1 | 1 |
| superpathway of L-citrulline metabolism | 12 | 9 | 1 |
| chorismate biosynthesis II (archaea) | 12 | 8 | 1 |
| L-glutamate degradation VII (to butanoate) | 12 | 5 | 1 |
| superpathway of L-tryptophan biosynthesis | 13 | 13 | 1 |
| 3-hydroxypropanoate cycle | 13 | 9 | 1 |
| glyoxylate assimilation | 13 | 6 | 1 |
| (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase) | 13 | 2 | 1 |
| L-tryptophan degradation V (side chain pathway) | 13 | 1 | 1 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 12 | 1 |
| docosahexaenoate biosynthesis III (6-desaturase, mammals) | 14 | 2 | 1 |
| L-tryptophan degradation III (eukaryotic) | 15 | 3 | 1 |
| mixed acid fermentation | 16 | 11 | 1 |
| glycerol degradation to butanol | 16 | 9 | 1 |
| crotonate fermentation (to acetate and cyclohexane carboxylate) | 16 | 5 | 1 |
| cutin biosynthesis | 16 | 1 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 1 |
| heterolactic fermentation | 18 | 11 | 1 |
| superpathway of the 3-hydroxypropanoate cycle | 18 | 9 | 1 |
| superpathway of anaerobic sucrose degradation | 19 | 14 | 1 |
| hexitol fermentation to lactate, formate, ethanol and acetate | 19 | 12 | 1 |
| protein N-glycosylation initial phase (eukaryotic) | 19 | 1 | 1 |
| superpathway of N-acetylneuraminate degradation | 22 | 12 | 1 |
| platensimycin biosynthesis | 26 | 6 | 1 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 21 | 1 |
| mycolate biosynthesis | 205 | 26 | 5 |
| superpathway of mycolate biosynthesis | 239 | 27 | 5 |
| superpathway of chorismate metabolism | 59 | 40 | 1 |