Experiment set2S419 for Phocaeicola vulgatus CL09T03C04
D-Mannose carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + D-Mannose (20 mM)
Culturing: Bvulgatus_CL09T03C04_ML5, 24-well microplate; 1.2 mL volume, Anaerobic, at 34 (C), shaken=0 rpm
By: Surya Tripathi on 3-Jul-23
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 6 genes in this experiment
For carbon source D-Mannose in Phocaeicola vulgatus CL09T03C04
For carbon source D-Mannose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Campylobacter Iron Metabolism | 1 |
| Carboxysome | 1 |
| Entner-Doudoroff Pathway | 1 |
| Glycolysis and Gluconeogenesis | 1 |
| Pentose phosphate pathway | 1 |
| Respiratory dehydrogenases 1 | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose phosphate pathway
- Glycolysis / Gluconeogenesis
- Fructose and mannose metabolism
- Oxidative phosphorylation
- Carbon fixation in photosynthetic organisms
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: