Experiment set2S322 for Parabacteroides merdae CL09T00C40

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

Genes with specific phenotypes:

  gene name fitness t score description  
HMPREF1078_RS12455 -5.9 -12.0 transcriptional regulator compare
HMPREF1078_RS12825 -5.5 -11.8 dicarboxylate/amino acid:cation symporter compare
HMPREF1078_RS10430 -4.3 -15.6 amidophosphoribosyltransferase compare
HMPREF1078_RS10910 -4.0 -17.2 alpha-amylase family protein compare
HMPREF1078_RS15005 -3.8 -13.5 biosynthetic arginine decarboxylase compare
HMPREF1078_RS14075 -3.6 -13.2 glycosyltransferase compare
HMPREF1078_RS12460 -3.0 -12.0 FAD-dependent oxidoreductase compare
HMPREF1078_RS15515 -2.9 -13.8 glycoside hydrolase family 2 TIM barrel-domain containing protein compare
HMPREF1078_RS15525 -2.8 -10.6 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS15530 -2.6 -13.1 TonB-dependent receptor compare
HMPREF1078_RS15385 -2.1 -5.1 site-specific integrase compare
HMPREF1078_RS14395 -2.0 -7.7 beta-galactosidase GalB compare
HMPREF1078_RS00470 -2.0 -6.3 lipoyl(octanoyl) transferase LipB compare
HMPREF1078_RS00835 -1.7 -7.6 excinuclease ABC subunit UvrA compare
HMPREF1078_RS06550 -1.7 -6.8 RNA methyltransferase compare
HMPREF1078_RS02540 -1.7 -5.5 hypothetical protein compare
HMPREF1078_RS10730 -1.6 -9.5 4-alpha-glucanotransferase compare
HMPREF1078_RS01205 -1.6 -7.8 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS10925 -1.5 -6.0 glutamine synthetase III compare
HMPREF1078_RS16415 -1.5 -5.0 Do family serine endopeptidase compare
HMPREF1078_RS03930 -1.4 -7.5 PIG-L family deacetylase compare
HMPREF1078_RS07275 -1.3 -8.5 DUF4493 domain-containing protein compare
HMPREF1078_RS07270 -1.3 -7.5 DUF4493 domain-containing protein compare
HMPREF1078_RS15345 -1.2 -6.2 DUF6057 family protein compare
HMPREF1078_RS05625 -1.2 -6.0 metal ABC transporter permease compare
HMPREF1078_RS12195 -1.2 -8.6 sodium/solute symporter compare
HMPREF1078_RS07280 -1.2 -7.9 PCMD domain-containing protein compare


Specific phenotypes for mouse mixed community diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm across organisms