Experiment set2S322 for Parabacteroides merdae CL09T00C40

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS00795 -8.2 -5.7 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS14505 -8.0 -5.5 hypothetical protein compare
HMPREF1078_RS10475 -7.9 -7.7 glycosyltransferase family 4 protein compare
HMPREF1078_RS00195 -7.8 -7.7 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1078_RS06805 -7.6 -5.2 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS06740 -7.3 -5.1 DUF4271 domain-containing protein compare
HMPREF1078_RS07315 -7.3 -5.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS00925 -7.3 -5.0 UpxY family transcription antiterminator compare
HMPREF1078_RS10470 -7.2 -5.0 glycosyltransferase compare
HMPREF1078_RS00070 -7.2 -5.0 glycosyltransferase compare
HMPREF1078_RS15255 -7.2 -5.0 ribosome maturation factor RimM compare
HMPREF1078_RS05545 -7.1 -4.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS03090 -7.1 -4.9 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS16730 -7.1 -4.9 acyltransferase compare
HMPREF1078_RS10465 -7.1 -4.9 hypothetical protein compare
HMPREF1078_RS00090 -7.1 -9.7 GNAT family N-acetyltransferase compare
HMPREF1078_RS00080 -7.0 -4.9 polysaccharide deacetylase family protein compare
HMPREF1078_RS00085 -7.0 -4.9 PIG-L family deacetylase compare
HMPREF1078_RS14670 -7.0 -4.8 DUF4270 domain-containing protein compare
HMPREF1078_RS07320 -6.9 -9.5 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS10660 -6.8 -4.7 acetylornithine carbamoyltransferase compare
HMPREF1078_RS04325 -6.8 -4.7 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS19150 -6.7 -4.7 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1078_RS16160 -6.7 -4.6 gliding motility lipoprotein GldH compare
HMPREF1078_RS05835 -6.7 -2.8 M20 family metallo-hydrolase compare
HMPREF1078_RS11315 -6.6 -4.5 argininosuccinate lyase compare
HMPREF1078_RS10580 -6.5 -4.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1078_RS10570 -6.4 -4.4 GNAT family N-acetyltransferase compare
HMPREF1078_RS17255 -6.4 -4.4 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS13545 -6.3 -10.6 diaminopimelate decarboxylase compare
HMPREF1078_RS00075 -6.3 -4.4 glycosyltransferase compare
HMPREF1078_RS17495 -6.3 -30.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS10575 -6.3 -4.4 argininosuccinate synthase compare
HMPREF1078_RS10780 -6.3 -6.1 capsule assembly Wzi family protein compare
HMPREF1078_RS14540 -6.3 -8.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1078_RS07755 -6.3 -3.5 outer membrane protein assembly factor BamD compare
HMPREF1078_RS11820 -6.2 -4.3 M28 family peptidase compare
HMPREF1078_RS16055 -6.2 -4.3 aminoglycoside phosphotransferase family protein compare
HMPREF1078_RS12115 -6.2 -4.3 thioredoxin compare
HMPREF1078_RS17540 -6.2 -4.3 glycosyltransferase family 2 protein compare
HMPREF1078_RS15400 -6.1 -15.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS04110 -6.0 -5.9 hypothetical protein compare
HMPREF1078_RS15845 -6.0 -7.1 copper homeostasis protein CutC compare
HMPREF1078_RS10585 -5.9 -7.1 aspartate aminotransferase family protein compare
HMPREF1078_RS05610 -5.9 -9.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1078_RS17490 -5.9 -16.4 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS14685 -5.9 -4.1 aspartate 1-decarboxylase compare
HMPREF1078_RS12455 -5.9 -12.0 transcriptional regulator compare
HMPREF1078_RS06560 -5.9 -9.9 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS00825 -5.9 -5.7 gliding motility-associated C-terminal domain-containing protein compare
HMPREF1078_RS12080 -5.9 -9.0 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS01870 -5.8 -4.0 phosphatase PAP2 family protein compare
HMPREF1078_RS05935 -5.7 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS14070 -5.7 -19.3 alpha-glucan family phosphorylase compare
HMPREF1078_RS04840 -5.7 -5.5 type IX secretion system sortase PorU compare
HMPREF1078_RS14700 -5.6 -13.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS15335 -5.6 -3.9 acetylglutamate kinase compare
HMPREF1078_RS04685 -5.6 -1.2 30S ribosome-binding factor RbfA compare
HMPREF1078_RS13550 -5.6 -12.4 aspartate kinase compare
HMPREF1078_RS02175 -5.5 -3.8 patatin-like phospholipase family protein compare
HMPREF1078_RS12825 -5.5 -11.8 dicarboxylate/amino acid:cation symporter compare
HMPREF1078_RS16315 -5.5 -3.8 GGGtGRT protein compare
HMPREF1078_RS07705 -5.5 -3.8 sugar transferase compare
HMPREF1078_RS06345 -5.5 -3.8 redox-regulated ATPase YchF compare
HMPREF1078_RS17480 -5.5 -19.5 glycosyltransferase compare
HMPREF1078_RS06530 -5.5 -3.8 radical SAM protein compare
HMPREF1078_RS17485 -5.4 -21.7 glycosyl transferase compare
HMPREF1078_RS16325 -5.4 -3.7 nitrogen-fixing protein NifU compare
HMPREF1078_RS02430 -5.4 -3.7 lipocalin-like domain-containing protein compare
HMPREF1078_RS13185 -5.4 -3.7 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS14665 -5.3 -10.8 glycoside hydrolase family 57 protein compare
HMPREF1078_RS14660 -5.3 -11.4 glycosyltransferase compare
HMPREF1078_RS04655 -5.3 -2.7 penicillin-binding protein compare
HMPREF1078_RS15315 -5.3 -3.6 DUF4831 family protein compare
HMPREF1078_RS08660 -5.3 -3.6 glycosyltransferase family 2 protein compare
HMPREF1078_RS14655 -5.3 -14.4 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1078_RS07610 -5.2 -3.6 glycosyltransferase family 2 protein compare
HMPREF1078_RS04820 -5.2 -3.6 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS05870 -5.1 -7.0 PglZ domain-containing protein compare
HMPREF1078_RS11105 -5.1 -3.5 type IX secretion system protein PorQ compare
HMPREF1078_RS04555 -5.1 -3.5 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS13725 -5.1 -7.7 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS13270 -5.0 -3.5 ATP-binding protein compare
HMPREF1078_RS16405 -5.0 -12.0 MATE family efflux transporter compare
HMPREF1078_RS08505 -4.9 -3.4 glycosyltransferase family 39 protein compare
HMPREF1078_RS04370 -4.9 -1.8 30S ribosomal protein S1 compare
HMPREF1078_RS13915 -4.9 -3.4 tetratricopeptide repeat protein compare
HMPREF1078_RS19630 -4.9 -4.3 hypothetical protein compare
HMPREF1078_RS05505 -4.9 -3.4 gliding motility protein GldL compare
HMPREF1078_RS05500 -4.8 -3.3 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS08715 -4.8 -3.3 galactokinase compare
HMPREF1078_RS00110 -4.8 -14.9 saccharopine dehydrogenase family protein compare
HMPREF1078_RS09885 -4.8 -3.3 alpha amylase C-terminal domain-containing protein compare
HMPREF1078_RS04420 -4.8 -2.6 RelA/SpoT family protein compare
HMPREF1078_RS10005 -4.8 -3.3 TonB-dependent receptor compare
HMPREF1078_RS02570 -4.8 -7.3 LytTR family DNA-binding domain-containing protein compare
HMPREF1078_RS01865 -4.8 -3.3 tetratricopeptide repeat protein compare
HMPREF1078_RS13995 -4.8 -17.3 hypothetical protein compare
HMPREF1078_RS14600 -4.7 -1.0 tRNA-Gly compare
HMPREF1078_RS05515 -4.7 -8.5 gliding motility protein GldN compare
HMPREF1078_RS05510 -4.7 -3.3 gliding motility protein GldM compare
HMPREF1078_RS11275 -4.7 -3.2 DUF6089 family protein compare
HMPREF1078_RS05495 -4.7 -4.6 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS07885 -4.7 -6.4 hypothetical protein compare
HMPREF1078_RS04385 -4.7 -3.4 HU family DNA-binding protein compare
HMPREF1078_RS12450 -4.7 -3.2 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1078_RS16875 -4.6 -7.0 type I methionyl aminopeptidase compare
HMPREF1078_RS15325 -4.6 -3.2 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS02230 -4.6 -15.8 DUF5103 domain-containing protein compare
HMPREF1078_RS16115 -4.6 -5.4 hypothetical protein compare
HMPREF1078_RS01805 -4.5 -13.2 carboxynorspermidine decarboxylase compare
HMPREF1078_RS15765 -4.5 -8.6 RNA polymerase sigma factor compare
HMPREF1078_RS13315 -4.5 -3.1 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1078_RS17080 -4.5 -9.5 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS13935 -4.4 -6.8 hypothetical protein compare
HMPREF1078_RS11260 -4.4 -9.0 OmpH family outer membrane protein compare
HMPREF1078_RS06225 -4.4 -10.4 exo-alpha-sialidase compare
HMPREF1078_RS12535 -4.4 -4.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1078_RS06175 -4.4 -2.9 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1078_RS04355 -4.4 -5.2 hypothetical protein compare
HMPREF1078_RS11100 -4.3 -4.2 (d)CMP kinase compare
HMPREF1078_RS13020 -4.3 -5.2 cell surface protein SprA compare
HMPREF1078_RS06745 -4.3 -3.0 uroporphyrinogen-III synthase compare
HMPREF1078_RS10430 -4.3 -15.6 amidophosphoribosyltransferase compare
HMPREF1078_RS11320 -4.3 -10.5 hypothetical protein compare
HMPREF1078_RS07780 -4.3 -3.4 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS10265 -4.3 -5.9 pyridoxine 5'-phosphate synthase compare
HMPREF1078_RS10030 -4.2 -14.7 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1078_RS09705 -4.2 -2.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1078_RS16230 -4.1 -2.8 porin family protein compare
HMPREF1078_RS10685 -4.1 -3.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
HMPREF1078_RS04925 -4.1 -2.8 elongation factor P compare
HMPREF1078_RS07805 -4.1 -26.0 TonB-dependent receptor compare
HMPREF1078_RS10020 -4.0 -8.8 OadG family transporter subunit compare
HMPREF1078_RS10910 -4.0 -17.2 alpha-amylase family protein compare
HMPREF1078_RS00220 -4.0 -19.6 tetratricopeptide repeat protein compare
HMPREF1078_RS07775 -4.0 -6.7 twin-arginine translocase subunit TatC compare
HMPREF1078_RS10015 -4.0 -17.0 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS10745 -4.0 -12.2 MlaD family protein compare
HMPREF1078_RS04785 -4.0 -7.6 nucleoside deaminase compare
HMPREF1078_RS01385 -4.0 -1.7 LemA family protein compare
HMPREF1078_RS11555 -4.0 -1.2 tRNA-Asn compare
HMPREF1078_RS14285 -3.9 -2.7 IMP dehydrogenase compare
HMPREF1078_RS07310 -3.9 -4.6 methionine--tRNA ligase compare
HMPREF1078_RS07810 -3.9 -22.3 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS13015 -3.9 -2.7 Holliday junction branch migration protein RuvA compare
HMPREF1078_RS17065 -3.9 -5.3 CPBP family intramembrane metalloprotease compare
HMPREF1078_RS02390 -3.9 -2.7 tetratricopeptide repeat protein compare
HMPREF1078_RS10160 -3.8 -2.6 OmpA family protein compare
HMPREF1078_RS07160 -3.8 -2.6 DUF4254 domain-containing protein compare
HMPREF1078_RS05855 -3.8 -12.2 tetratricopeptide repeat protein compare
HMPREF1078_RS15005 -3.8 -13.5 biosynthetic arginine decarboxylase compare
HMPREF1078_RS10565 -3.8 -7.7 arginine repressor compare
HMPREF1078_RS00095 -3.8 -12.5 recombinase RecA compare
HMPREF1078_RS04440 -3.8 -5.9 AAA family ATPase compare
HMPREF1078_RS14555 -3.8 -5.1 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1078_RS08590 -3.7 -14.6 HlyD family efflux transporter periplasmic adaptor subunit compare
HMPREF1078_RS14205 -3.7 -2.5 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1078_RS15460 -3.7 -4.4 DUF3078 domain-containing protein compare
HMPREF1078_RS10025 -3.7 -7.0 biotin/lipoyl-binding protein compare
HMPREF1078_RS04660 -3.7 -1.1 FtsL-like putative cell division protein compare
HMPREF1078_RS04665 -3.7 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
HMPREF1078_RS01215 -3.6 -4.7 hypothetical protein compare
HMPREF1078_RS14075 -3.6 -13.2 glycosyltransferase compare
HMPREF1078_RS20105 -3.6 -15.0 peptidylprolyl isomerase compare
HMPREF1078_RS13635 -3.6 -10.1 mannonate dehydratase compare
HMPREF1078_RS14210 -3.5 -1.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1078_RS09775 -3.5 -14.0 translocation/assembly module TamB compare
HMPREF1078_RS07175 -3.5 -2.4 lipopolysaccharide kinase InaA family protein compare
HMPREF1078_RS11980 -3.5 -5.8 thiamine diphosphokinase compare
HMPREF1078_RS13930 -3.4 -4.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1078_RS14995 -3.4 -10.2 BamA/TamA family outer membrane protein compare
HMPREF1078_RS05620 -3.4 -11.7 tetratricopeptide repeat protein compare
HMPREF1078_RS17050 -3.4 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1078_RS08405 -3.4 -1.9 DUF2148 domain-containing protein compare
HMPREF1078_RS04435 -3.4 -7.4 ParB/RepB/Spo0J family partition protein compare
HMPREF1078_RS15405 -3.4 -6.2 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS17005 -3.4 -2.4 DNA mismatch repair endonuclease MutL compare
HMPREF1078_RS02855 -3.4 -2.5 hypothetical protein compare
HMPREF1078_RS11005 -3.4 -17.1 tetratricopeptide repeat protein compare
HMPREF1078_RS15270 -3.4 -8.4 RIP metalloprotease RseP compare
HMPREF1078_RS14085 -3.4 -4.8 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS10280 -3.4 -2.0 energy transducer TonB compare
HMPREF1078_RS10270 -3.3 -5.6 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1078_RS11135 -3.3 -1.9 hypothetical protein compare
HMPREF1078_RS16710 -3.3 -2.3 chorismate synthase compare
HMPREF1078_RS16790 -3.3 -2.3 S9 family peptidase compare
HMPREF1078_RS16320 -3.3 -3.3 hypothetical protein compare
HMPREF1078_RS14200 -3.3 -2.9 shikimate dehydrogenase compare
HMPREF1078_RS11010 -3.3 -12.9 hypothetical protein compare
HMPREF1078_RS01170 -3.3 -2.3 carbon-nitrogen hydrolase compare
HMPREF1078_RS12530 -3.3 -9.8 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1078_RS17075 -3.3 -6.9 ABC transporter permease compare
HMPREF1078_RS11545 -3.3 -12.3 S41 family peptidase compare
HMPREF1078_RS06810 -3.3 -9.6 hypothetical protein compare
HMPREF1078_RS09625 -3.3 -1.0 tRNA-Leu compare
HMPREF1078_RS07165 -3.3 -5.8 glycosyltransferase family 9 protein compare
HMPREF1078_RS05605 -3.2 -7.0 sugar kinase compare
HMPREF1078_RS11310 -3.2 -5.2 polyketide cyclase compare
HMPREF1078_RS12790 -3.2 -10.5 Lrp/AsnC ligand binding domain-containing protein compare


Specific Phenotypes

For 27 genes in this experiment

For mouse mixed community diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm in Parabacteroides merdae CL09T00C40

For mouse mixed community diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm across organisms