Experiment set2S174 for Lysobacter sp. OAE881

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media

200 most important genes:

  gene name fitness t score description  
ABIE51_RS15620 -5.8 -4.0 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS16260 -5.2 -3.6 hypothetical protein compare
ABIE51_RS03940 -5.2 -7.9 response regulator transcription factor compare
ABIE51_RS01635 -5.1 -9.8 N-acetylglucosamine-6-phosphate deacetylase compare
ABIE51_RS19030 -5.0 -9.0 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS17630 -4.9 -3.4 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS16395 -4.6 -3.2 PDZ domain-containing protein compare
ABIE51_RS02300 -4.5 -8.4 lauroyl acyltransferase compare
ABIE51_RS08885 -4.2 -3.1 cell division protein ZipA compare
ABIE51_RS03160 -4.1 -24.9 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS18545 -4.0 -3.6 DUF6249 domain-containing protein compare
ABIE51_RS07575 -4.0 -3.9 FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein compare
ABIE51_RS01280 -3.9 -5.8 lipid-binding SYLF domain-containing protein compare
ABIE51_RS15390 -3.8 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS19025 -3.8 -9.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABIE51_RS16555 -3.7 -15.6 SLC13 family permease compare
ABIE51_RS15615 -3.7 -10.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS04310 -3.6 -5.5 glycosyltransferase compare
ABIE51_RS05300 -3.6 -7.9 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS04125 -3.6 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS03165 -3.6 -24.7 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS05180 -3.5 -6.3 glycosyltransferase compare
ABIE51_RS16510 -3.5 -10.3 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS04805 -3.3 -3.2 A24 family peptidase compare
ABIE51_RS14085 -3.3 -2.7 DUF6165 family protein compare
ABIE51_RS05295 -3.2 -6.8 response regulator transcription factor compare
ABIE51_RS06015 -3.0 -3.5 methylisocitrate lyase compare
ABIE51_RS09365 -2.9 -4.3 glycosyltransferase family 4 protein compare
ABIE51_RS17270 -2.9 -2.8 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS14555 -2.9 -1.9 M15 family metallopeptidase compare
ABIE51_RS04620 -2.9 -15.9 serine hydroxymethyltransferase compare
ABIE51_RS08700 -2.8 -13.6 heme lyase CcmF/NrfE family subunit compare
ABIE51_RS17760 -2.8 -9.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS06340 -2.8 -10.3 hypothetical protein compare
ABIE51_RS08715 -2.8 -12.6 heme ABC transporter permease CcmC compare
ABIE51_RS04245 -2.8 -6.6 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS00635 -2.7 -6.9 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS14155 -2.6 -9.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS00515 -2.5 -5.8 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABIE51_RS02265 -2.5 -3.4 glycosyltransferase family 2 protein compare
ABIE51_RS16015 -2.5 -3.7 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS04425 -2.5 -14.1 threonine/serine exporter family protein compare
ABIE51_RS11490 -2.5 -19.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS15885 -2.5 -5.2 DUF2066 domain-containing protein compare
ABIE51_RS09045 -2.4 -5.3 GntR family transcriptional regulator compare
ABIE51_RS00035 -2.3 -17.8 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS17190 -2.3 -3.2 penicillin-binding protein 1A compare
ABIE51_RS08720 -2.3 -6.8 heme exporter protein CcmB compare
ABIE51_RS14070 -2.3 -4.6 glycosyltransferase family 9 protein compare
ABIE51_RS08705 -2.3 -9.3 cytochrome c maturation protein CcmE compare
ABIE51_RS06180 -2.2 -7.0 amidophosphoribosyltransferase compare
ABIE51_RS08695 -2.2 -6.2 DsbE family thiol:disulfide interchange protein compare
ABIE51_RS16360 -2.1 -4.3 glycine cleavage system protein GcvH compare
ABIE51_RS16365 -2.1 -4.4 glycine cleavage system aminomethyltransferase GcvT compare
ABIE51_RS13455 -2.1 -4.4 membrane protein insertion efficiency factor YidD compare
ABIE51_RS14090 -2.1 -7.3 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS15890 -2.0 -4.4 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS17705 -2.0 -12.5 protein-disulfide reductase DsbD compare
ABIE51_RS08690 -2.0 -3.1 cytochrome c-type biogenesis protein compare
ABIE51_RS09425 -2.0 -1.3 helix-turn-helix domain-containing protein compare
ABIE51_RS06000 -2.0 -9.7 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS16820 -1.9 -7.5 flagellar motor switch protein FliN compare
ABIE51_RS04505 -1.9 -6.4 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS14345 -1.9 -6.1 aminomethyl-transferring glycine dehydrogenase compare
ABIE51_RS15870 -1.8 -6.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABIE51_RS16815 -1.8 -9.2 flagellar motor switch protein FliM compare
ABIE51_RS09105 -1.8 -5.5 NAD-glutamate dehydrogenase domain-containing protein compare
ABIE51_RS02280 -1.8 -6.4 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS17770 -1.8 -4.4 phosphoribosylamine--glycine ligase compare
ABIE51_RS05540 -1.8 -2.7 hypothetical protein compare
ABIE51_RS04335 -1.8 -8.9 hypothetical protein compare
ABIE51_RS00325 -1.8 -8.2 fatty acid desaturase compare
ABIE51_RS15400 -1.7 -4.0 Trm112 family protein compare
ABIE51_RS04390 -1.7 -7.9 glycoside hydrolase family 99-like domain-containing protein compare
ABIE51_RS11615 -1.7 -8.2 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS12620 -1.7 -3.0 fumarate hydratase compare
ABIE51_RS11495 -1.7 -7.8 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS14060 -1.7 -5.9 MBL fold metallo-hydrolase compare
ABIE51_RS15990 -1.6 -1.9 PTS sugar transporter subunit IIA compare
ABIE51_RS11680 -1.6 -2.8 SsrA-binding protein SmpB compare
ABIE51_RS09375 -1.6 -6.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS00250 -1.6 -4.4 olefin beta-lactone synthetase compare
ABIE51_RS17200 -1.6 -9.1 citrate synthase compare
ABIE51_RS16785 -1.5 -3.0 flagellar motor switch protein FliG compare
ABIE51_RS14490 -1.5 -7.3 N-acetylmuramoyl-L-alanine amidase compare
ABIE51_RS09065 -1.5 -7.8 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS03265 -1.5 -4.6 trypsin-like peptidase domain-containing protein compare
ABIE51_RS13260 -1.5 -8.7 amino acid permease compare
ABIE51_RS14150 -1.5 -8.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS06980 -1.4 -1.4 [protein-PII] uridylyltransferase compare
ABIE51_RS00065 -1.4 -2.4 orotate phosphoribosyltransferase compare
ABIE51_RS04190 -1.4 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABIE51_RS04835 -1.4 -6.8 glycosyltransferase family 2 protein compare
ABIE51_RS07005 -1.3 -5.5 asparagine synthase B compare
ABIE51_RS19265 -1.3 -9.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABIE51_RS03155 -1.2 -7.7 lytic murein transglycosylase B compare
ABIE51_RS11625 -1.2 -5.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
ABIE51_RS05005 -1.2 -1.3 PhzF family phenazine biosynthesis isomerase compare
ABIE51_RS05185 -1.2 -8.6 penicillin-binding protein 1B compare
ABIE51_RS03185 -1.2 -6.0 carboxy terminal-processing peptidase compare
ABIE51_RS00085 -1.2 -4.3 dUTP diphosphatase compare
ABIE51_RS08725 -1.2 -3.4 heme ABC exporter ATP-binding protein CcmA compare
ABIE51_RS13300 -1.2 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
ABIE51_RS04475 -1.2 -7.9 leucyl aminopeptidase compare
ABIE51_RS09770 -1.1 -7.8 cytochrome o ubiquinol oxidase subunit I compare
ABIE51_RS16840 -1.1 -7.0 flagellar biosynthetic protein FliR compare
ABIE51_RS13205 -1.1 -2.2 hydroxymethylglutaryl-CoA lyase compare
ABIE51_RS09370 -1.1 -7.3 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS09790 -1.1 -3.7 ATP-binding protein compare
ABIE51_RS07090 -1.1 -5.8 recombination protein NinB compare
ABIE51_RS06430 -1.1 -1.3 hypothetical protein compare
ABIE51_RS08265 -1.1 -6.0 tryptophan synthase subunit alpha compare
ABIE51_RS09780 -1.1 -2.5 cytochrome o ubiquinol oxidase subunit IV compare
ABIE51_RS08260 -1.1 -6.1 tryptophan synthase subunit beta compare
ABIE51_RS09765 -1.0 -5.8 ubiquinol oxidase subunit II compare
ABIE51_RS01000 -1.0 -7.2 ABC transporter substrate-binding protein compare
ABIE51_RS13885 -1.0 -3.0 sigma-E factor negative regulatory protein compare
ABIE51_RS18820 -1.0 -2.4 NADP-dependent malic enzyme compare
ABIE51_RS09355 -1.0 -1.5 lipopolysaccharide assembly protein LapA domain-containing protein compare
ABIE51_RS05575 -1.0 -1.1 helix-turn-helix transcriptional regulator compare
ABIE51_RS07060 -1.0 -3.3 hypothetical protein compare
ABIE51_RS07100 -1.0 -3.0 hypothetical protein compare
ABIE51_RS05175 -1.0 -4.4 hypothetical protein compare
ABIE51_RS07250 -1.0 -2.1 hypothetical protein compare
ABIE51_RS07245 -1.0 -7.5 lysozyme compare
ABIE51_RS07235 -1.0 -5.4 tRNA-Ser compare
ABIE51_RS16780 -1.0 -5.1 flagellar basal-body MS-ring/collar protein FliF compare
ABIE51_RS01515 -1.0 -5.2 phospholipase D family protein compare
ABIE51_RS15015 -1.0 -2.7 preprotein translocase subunit YajC compare
ABIE51_RS13305 -1.0 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE51_RS07270 -0.9 -5.4 hypothetical protein compare
ABIE51_RS02450 -0.9 -2.4 MarR family transcriptional regulator compare
ABIE51_RS15725 -0.9 -1.4 SUF system Fe-S cluster assembly regulator compare
ABIE51_RS09430 -0.9 -3.8 tetratricopeptide repeat protein compare
ABIE51_RS06905 -0.9 -5.2 RIP metalloprotease RseP compare
ABIE51_RS06105 -0.9 -3.9 OmpA family protein compare
ABIE51_RS12565 -0.9 -7.1 acyl-CoA dehydrogenase family protein compare
ABIE51_RS07260 -0.9 -4.4 hypothetical protein compare
ABIE51_RS16830 -0.9 -6.7 flagellar type III secretion system pore protein FliP compare
ABIE51_RS04825 -0.9 -4.5 pilin compare
ABIE51_RS07110 -0.9 -2.1 hypothetical protein compare
ABIE51_RS13115 -0.9 -6.0 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein compare
ABIE51_RS07310 -0.9 -6.6 hypothetical protein compare
ABIE51_RS08865 -0.9 -3.6 glucokinase compare
ABIE51_RS13815 -0.9 -5.6 beta-N-acetylhexosaminidase compare
ABIE51_RS07075 -0.9 -5.2 single-stranded DNA-binding protein compare
ABIE51_RS09775 -0.9 -3.6 cytochrome o ubiquinol oxidase subunit III compare
ABIE51_RS07130 -0.9 -5.1 hypothetical protein compare
ABIE51_RS05105 -0.9 -3.7 7-cyano-7-deazaguanine synthase QueC compare
ABIE51_RS16760 -0.9 -1.3 RNA polymerase factor sigma-54 compare
ABIE51_RS13310 -0.9 -1.7 imidazole glycerol phosphate synthase subunit HisH compare
ABIE51_RS08250 -0.9 -2.4 phosphoribosylanthranilate isomerase compare
ABIE51_RS07265 -0.9 -4.4 DUF3307 domain-containing protein compare
ABIE51_RS15970 -0.9 -2.7 HPr(Ser) kinase/phosphatase compare
ABIE51_RS06555 -0.9 -4.1 protease modulator HflC compare
ABIE51_RS01360 -0.9 -2.5 nitrogen regulation protein NR(I) compare
ABIE51_RS06595 -0.9 -1.0 MGMT family protein compare
ABIE51_RS18715 -0.9 -1.4 DUF2784 domain-containing protein compare
ABIE51_RS08015 -0.9 -3.6 polynucleotide adenylyltransferase PcnB compare
ABIE51_RS07275 -0.8 -1.6 hypothetical protein compare
ABIE51_RS07290 -0.8 -3.4 DUF5681 domain-containing protein compare
ABIE51_RS18995 -0.8 -4.9 alpha-glucosidase family protein compare
ABIE51_RS00555 -0.8 -3.6 histidine kinase compare
ABIE51_RS07070 -0.8 -6.0 hypothetical protein compare
ABIE51_RS14530 -0.8 -4.0 hypothetical protein compare
ABIE51_RS07155 -0.8 -3.5 hypothetical protein compare
ABIE51_RS09340 -0.8 -2.1 (d)CMP kinase compare
ABIE51_RS16845 -0.8 -6.0 flagellar biosynthesis protein FlhB compare
ABIE51_RS17405 -0.8 -4.1 rubredoxin compare
ABIE51_RS15975 -0.8 -4.8 RNase adapter RapZ compare
ABIE51_RS07295 -0.8 -5.0 hypothetical protein compare
ABIE51_RS01045 -0.8 -1.8 hypothetical protein compare
ABIE51_RS17095 -0.8 -5.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABIE51_RS01095 -0.8 -3.9 cell division protein ZapE compare
ABIE51_RS18515 -0.8 -2.9 tRNA-Leu compare
ABIE51_RS04295 -0.8 -3.6 cystathionine gamma-synthase compare
ABIE51_RS17060 -0.8 -4.6 phosphoglycerate kinase compare
ABIE51_RS07325 -0.8 -5.4 hypothetical protein compare
ABIE51_RS14045 -0.8 -2.6 MoaD/ThiS family protein compare
ABIE51_RS07315 -0.8 -5.6 P22 phage major capsid protein family protein compare
ABIE51_RS13890 -0.8 -6.5 RNA polymerase sigma factor RpoE compare
ABIE51_RS07335 -0.8 -2.9 hypothetical protein compare
ABIE51_RS02380 -0.8 -1.1 hypothetical protein compare
ABIE51_RS12110 -0.8 -2.0 LysR family transcriptional regulator compare
ABIE51_RS16250 -0.8 -6.2 monofunctional biosynthetic peptidoglycan transglycosylase compare
ABIE51_RS00940 -0.8 -5.6 ferredoxin reductase compare
ABIE51_RS07080 -0.7 -3.3 YqaJ viral recombinase family protein compare
ABIE51_RS17450 -0.7 -6.0 Mur ligase family protein compare
ABIE51_RS07220 -0.7 -4.7 hypothetical protein compare
ABIE51_RS00540 -0.7 -4.9 NADP-dependent isocitrate dehydrogenase compare
ABIE51_RS07375 -0.7 -2.3 hypothetical protein compare
ABIE51_RS04690 -0.7 -2.1 penicillin-binding protein activator compare
ABIE51_RS07195 -0.7 -3.8 hypothetical protein compare
ABIE51_RS07165 -0.7 -3.5 DnaB-like helicase C-terminal domain-containing protein compare
ABIE51_RS07185 -0.7 -4.2 DUF968 domain-containing protein compare
ABIE51_RS13145 -0.7 -4.5 acetyl-CoA C-acyltransferase compare
ABIE51_RS16850 -0.7 -6.2 flagellar biosynthesis protein FlhA compare
ABIE51_RS07280 -0.7 -2.3 hypothetical protein compare
ABIE51_RS04210 -0.7 -5.9 cAMP-activated global transcriptional regulator CRP compare
ABIE51_RS07345 -0.7 -5.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Lysobacter sp. OAE881 in agar plate interaction experiments