Experiment set2S168 for Lysobacter sp. OAE881

Compare to:

Parafilmed volatile R2A_HEPES agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
ABIE51_RS15620 -4.8 -7.4 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS14085 -4.8 -2.9 DUF6165 family protein compare
ABIE51_RS05180 -4.4 -5.2 glycosyltransferase compare
ABIE51_RS17630 -4.2 -7.0 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS16260 -4.2 -4.0 hypothetical protein compare
ABIE51_RS09365 -4.2 -2.9 glycosyltransferase family 4 protein compare
ABIE51_RS15390 -4.0 -2.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS14070 -4.0 -5.4 glycosyltransferase family 9 protein compare
ABIE51_RS04125 -4.0 -6.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS18545 -3.8 -2.7 DUF6249 domain-containing protein compare
ABIE51_RS03160 -3.7 -21.0 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS17760 -3.6 -9.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS02280 -3.6 -7.6 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS05300 -3.6 -7.8 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS16395 -3.6 -2.3 PDZ domain-containing protein compare
ABIE51_RS19025 -3.5 -10.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABIE51_RS04805 -3.4 -3.3 A24 family peptidase compare
ABIE51_RS02300 -3.4 -7.8 lauroyl acyltransferase compare
ABIE51_RS03165 -3.4 -24.7 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS03940 -3.3 -9.3 response regulator transcription factor compare
ABIE51_RS15615 -3.3 -9.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS01280 -3.3 -5.8 lipid-binding SYLF domain-containing protein compare
ABIE51_RS04310 -3.2 -5.3 glycosyltransferase compare
ABIE51_RS06015 -2.9 -3.3 methylisocitrate lyase compare
ABIE51_RS09065 -2.9 -11.6 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS04245 -2.8 -6.7 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS06340 -2.8 -10.8 hypothetical protein compare
ABIE51_RS04505 -2.6 -7.0 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS14345 -2.6 -7.8 aminomethyl-transferring glycine dehydrogenase compare
ABIE51_RS00065 -2.5 -3.6 orotate phosphoribosyltransferase compare
ABIE51_RS15970 -2.4 -5.0 HPr(Ser) kinase/phosphatase compare
ABIE51_RS16015 -2.4 -2.3 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS04620 -2.3 -12.3 serine hydroxymethyltransferase compare
ABIE51_RS14555 -2.3 -1.8 M15 family metallopeptidase compare
ABIE51_RS19030 -2.3 -8.9 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS14060 -2.2 -5.6 MBL fold metallo-hydrolase compare
ABIE51_RS11490 -2.2 -17.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS02265 -2.1 -2.5 glycosyltransferase family 2 protein compare
ABIE51_RS01635 -2.1 -7.6 N-acetylglucosamine-6-phosphate deacetylase compare
ABIE51_RS14155 -2.1 -9.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS16485 -2.1 -2.1 adenosylhomocysteinase compare
ABIE51_RS00635 -2.0 -7.1 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS04390 -2.0 -8.5 glycoside hydrolase family 99-like domain-containing protein compare
ABIE51_RS16510 -2.0 -8.8 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS00035 -2.0 -15.1 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS08885 -1.9 -1.6 cell division protein ZipA compare
ABIE51_RS09045 -1.9 -3.8 GntR family transcriptional regulator compare
ABIE51_RS17190 -1.9 -3.8 penicillin-binding protein 1A compare
ABIE51_RS09375 -1.9 -6.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS00515 -1.9 -4.4 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABIE51_RS05295 -1.9 -5.7 response regulator transcription factor compare
ABIE51_RS06000 -1.8 -9.2 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS16360 -1.7 -3.3 glycine cleavage system protein GcvH compare
ABIE51_RS08720 -1.7 -5.8 heme exporter protein CcmB compare
ABIE51_RS06180 -1.7 -6.0 amidophosphoribosyltransferase compare
ABIE51_RS13300 -1.6 -5.8 imidazole glycerol phosphate synthase subunit HisF compare
ABIE51_RS00250 -1.6 -3.2 olefin beta-lactone synthetase compare
ABIE51_RS07575 -1.6 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein compare
ABIE51_RS05540 -1.5 -2.2 hypothetical protein compare
ABIE51_RS03185 -1.5 -7.3 carboxy terminal-processing peptidase compare
ABIE51_RS04335 -1.5 -8.1 hypothetical protein compare
ABIE51_RS13260 -1.5 -8.8 amino acid permease compare
ABIE51_RS08695 -1.4 -5.1 DsbE family thiol:disulfide interchange protein compare
ABIE51_RS14090 -1.4 -6.1 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS11495 -1.4 -6.0 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS15890 -1.4 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS07320 -1.4 -4.9 packaged DNA stabilization gp4 family protein compare
ABIE51_RS14530 -1.4 -5.2 hypothetical protein compare
ABIE51_RS14150 -1.3 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS13205 -1.3 -1.9 hydroxymethylglutaryl-CoA lyase compare
ABIE51_RS17770 -1.3 -2.4 phosphoribosylamine--glycine ligase compare
ABIE51_RS08265 -1.3 -6.8 tryptophan synthase subunit alpha compare
ABIE51_RS18715 -1.3 -1.6 DUF2784 domain-containing protein compare
ABIE51_RS05005 -1.3 -1.2 PhzF family phenazine biosynthesis isomerase compare
ABIE51_RS11615 -1.3 -7.2 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS04835 -1.3 -5.6 glycosyltransferase family 2 protein compare
ABIE51_RS03155 -1.3 -7.8 lytic murein transglycosylase B compare
ABIE51_RS08520 -1.2 -1.5 response regulator transcription factor compare
ABIE51_RS17705 -1.2 -9.2 protein-disulfide reductase DsbD compare
ABIE51_RS17270 -1.2 -2.1 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS08700 -1.2 -8.1 heme lyase CcmF/NrfE family subunit compare
ABIE51_RS08690 -1.2 -2.1 cytochrome c-type biogenesis protein compare
ABIE51_RS09425 -1.2 -1.4 helix-turn-helix domain-containing protein compare
ABIE51_RS09370 -1.2 -8.5 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS17200 -1.2 -6.1 citrate synthase compare
ABIE51_RS15870 -1.2 -3.9 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABIE51_RS07275 -1.2 -1.7 hypothetical protein compare
ABIE51_RS16365 -1.2 -2.4 glycine cleavage system aminomethyltransferase GcvT compare
ABIE51_RS09340 -1.2 -3.3 (d)CMP kinase compare
ABIE51_RS08715 -1.2 -7.1 heme ABC transporter permease CcmC compare
ABIE51_RS08250 -1.1 -2.5 phosphoribosylanthranilate isomerase compare
ABIE51_RS15015 -1.1 -2.2 preprotein translocase subunit YajC compare
ABIE51_RS14885 -1.1 -1.2 DUF1428 domain-containing protein compare
ABIE51_RS11625 -1.1 -4.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
ABIE51_RS08260 -1.0 -5.8 tryptophan synthase subunit beta compare
ABIE51_RS09105 -1.0 -3.2 NAD-glutamate dehydrogenase domain-containing protein compare
ABIE51_RS00270 -1.0 -2.3 DUF4156 domain-containing protein compare
ABIE51_RS04180 -1.0 -4.1 anthranilate phosphoribosyltransferase compare
ABIE51_RS07005 -1.0 -4.6 asparagine synthase B compare
ABIE51_RS06430 -1.0 -1.3 hypothetical protein compare
ABIE51_RS13310 -1.0 -1.7 imidazole glycerol phosphate synthase subunit HisH compare
ABIE51_RS15020 -1.0 -4.4 tRNA guanosine(34) transglycosylase Tgt compare
ABIE51_RS16215 -1.0 -1.2 DUF1294 domain-containing protein compare
ABIE51_RS15990 -1.0 -2.1 PTS sugar transporter subunit IIA compare
ABIE51_RS08780 -1.0 -3.3 SMC-Scp complex subunit ScpB compare
ABIE51_RS06555 -1.0 -4.1 protease modulator HflC compare
ABIE51_RS13115 -1.0 -6.0 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein compare
ABIE51_RS08880 -1.0 -5.2 chromosome segregation protein SMC compare
ABIE51_RS04475 -1.0 -6.4 leucyl aminopeptidase compare
ABIE51_RS03265 -1.0 -4.7 trypsin-like peptidase domain-containing protein compare
ABIE51_RS14495 -0.9 -6.5 acyl-CoA thioesterase II compare
ABIE51_RS10470 -0.9 -5.5 SMP-30/gluconolactonase/LRE family protein compare
ABIE51_RS08705 -0.9 -4.6 cytochrome c maturation protein CcmE compare
ABIE51_RS10670 -0.9 -0.8 LysR family transcriptional regulator compare
ABIE51_RS09770 -0.9 -6.3 cytochrome o ubiquinol oxidase subunit I compare
ABIE51_RS13455 -0.9 -2.5 membrane protein insertion efficiency factor YidD compare
ABIE51_RS07290 -0.9 -3.1 DUF5681 domain-containing protein compare
ABIE51_RS04920 -0.9 -0.8 trehalose-phosphatase compare
ABIE51_RS13320 -0.9 -4.2 histidinol-phosphate transaminase compare
ABIE51_RS10240 -0.9 -1.3 hemerythrin domain-containing protein compare
ABIE51_RS01815 -0.9 -1.5 shikimate dehydrogenase compare
ABIE51_RS13315 -0.9 -1.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABIE51_RS02450 -0.9 -3.0 MarR family transcriptional regulator compare
ABIE51_RS13380 -0.8 -3.6 argininosuccinate lyase compare
ABIE51_RS03835 -0.8 -2.5 hypothetical protein compare
ABIE51_RS07310 -0.8 -4.6 hypothetical protein compare
ABIE51_RS15725 -0.8 -1.0 SUF system Fe-S cluster assembly regulator compare
ABIE51_RS12620 -0.8 -1.7 fumarate hydratase compare
ABIE51_RS18520 -0.8 -1.6 hypothetical protein compare
ABIE51_RS05375 -0.8 -4.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABIE51_RS01095 -0.8 -3.5 cell division protein ZapE compare
ABIE51_RS00085 -0.8 -2.7 dUTP diphosphatase compare
ABIE51_RS18515 -0.8 -1.8 tRNA-Leu compare
ABIE51_RS02175 -0.8 -5.6 signal peptide peptidase SppA compare
ABIE51_RS11520 -0.8 -3.9 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
ABIE51_RS07190 -0.8 -1.8 SANT/Myb-like DNA-binding domain-containing protein compare
ABIE51_RS07360 -0.8 -6.3 hypothetical protein compare
ABIE51_RS07270 -0.8 -3.5 hypothetical protein compare
ABIE51_RS09000 -0.7 -3.9 cupin domain-containing protein compare
ABIE51_RS06980 -0.7 -0.5 [protein-PII] uridylyltransferase compare
ABIE51_RS15030 -0.7 -1.8 Lrp/AsnC family transcriptional regulator compare
ABIE51_RS06820 -0.7 -2.5 exodeoxyribonuclease VII small subunit compare
ABIE51_RS05060 -0.7 -3.1 tol-pal system-associated acyl-CoA thioesterase compare
ABIE51_RS12565 -0.7 -5.0 acyl-CoA dehydrogenase family protein compare
ABIE51_RS15095 -0.7 -2.5 TMEM43 family protein compare
ABIE51_RS06730 -0.7 -2.7 LPS assembly lipoprotein LptE compare
ABIE51_RS13480 -0.7 -1.5 phytoene/squalene synthase family protein compare
ABIE51_RS03135 -0.7 -2.4 rod shape-determining protein MreC compare
ABIE51_RS06785 -0.7 -5.0 ribonuclease G compare
ABIE51_RS07300 -0.7 -4.9 portal protein compare
ABIE51_RS13720 -0.7 -3.5 aldehyde dehydrogenase family protein compare
ABIE51_RS07335 -0.7 -3.1 hypothetical protein compare
ABIE51_RS07280 -0.7 -1.9 hypothetical protein compare
ABIE51_RS07295 -0.7 -4.7 hypothetical protein compare
ABIE51_RS10645 -0.7 -0.7 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein compare
ABIE51_RS10345 -0.7 -1.4 type 1 glutamine amidotransferase domain-containing protein compare
ABIE51_RS03275 -0.7 -1.2 hypothetical protein compare
ABIE51_RS11805 -0.7 -2.4 ribonuclease E compare
ABIE51_RS06500 -0.7 -2.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS03845 -0.7 -1.3 cbb3-type cytochrome c oxidase subunit 3 compare
ABIE51_RS12965 -0.7 -1.3 hypothetical protein compare
ABIE51_RS15205 -0.7 -1.4 hypothetical protein compare
ABIE51_RS08785 -0.7 -4.3 ScpA family protein compare
ABIE51_RS17950 -0.7 -2.6 6-carboxytetrahydropterin synthase QueD compare
ABIE51_RS01000 -0.7 -4.9 ABC transporter substrate-binding protein compare
ABIE51_RS17495 -0.7 -6.3 TonB-dependent receptor compare
ABIE51_RS17530 -0.7 -3.6 threonine synthase compare
ABIE51_RS07325 -0.7 -4.1 hypothetical protein compare
ABIE51_RS11680 -0.7 -1.7 SsrA-binding protein SmpB compare
ABIE51_RS08245 -0.7 -2.6 tRNA pseudouridine(38-40) synthase TruA compare
ABIE51_RS13885 -0.7 -1.8 sigma-E factor negative regulatory protein compare
ABIE51_RS04995 -0.7 -0.9 YbaL family putative K(+) efflux transporter compare
ABIE51_RS07225 -0.7 -3.3 hypothetical protein compare
ABIE51_RS07285 -0.6 -2.4 hypothetical protein compare
ABIE51_RS16375 -0.6 -2.2 NfeD family protein compare
ABIE51_RS07330 -0.6 -2.8 hypothetical protein compare
ABIE51_RS01505 -0.6 -2.0 hypothetical protein compare
ABIE51_RS01045 -0.6 -1.3 hypothetical protein compare
ABIE51_RS05985 -0.6 -3.2 DUF2127 domain-containing protein compare
ABIE51_RS01390 -0.6 -3.3 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS15975 -0.6 -3.6 RNase adapter RapZ compare
ABIE51_RS00785 -0.6 -3.1 energy transducer TonB compare
ABIE51_RS04190 -0.6 -1.5 indole-3-glycerol phosphate synthase TrpC compare
ABIE51_RS07355 -0.6 -4.3 hypothetical protein compare
ABIE51_RS07595 -0.6 -0.7 enoyl-CoA hydratase/isomerase family protein compare
ABIE51_RS07375 -0.6 -2.9 hypothetical protein compare
ABIE51_RS15510 -0.6 -1.4 transporter associated domain-containing protein compare
ABIE51_RS16320 -0.6 -4.1 TetR/AcrR family transcriptional regulator compare
ABIE51_RS01720 -0.6 -3.8 NAD-dependent epimerase/dehydratase family protein compare
ABIE51_RS07365 -0.6 -5.3 glycosyl hydrolase family 28-related protein compare
ABIE51_RS07235 -0.6 -2.6 tRNA-Ser compare
ABIE51_RS01440 -0.6 -0.9 P-II family nitrogen regulator compare
ABIE51_RS00480 -0.6 -1.6 hypothetical protein compare
ABIE51_RS19165 -0.6 -2.7 heme o synthase compare
ABIE51_RS07135 -0.6 -1.0 YdaS family helix-turn-helix protein compare
ABIE51_RS07315 -0.6 -4.0 P22 phage major capsid protein family protein compare
ABIE51_RS07350 -0.6 -2.5 hypothetical protein compare
ABIE51_RS16555 -0.6 -4.4 SLC13 family permease compare
ABIE51_RS10805 -0.6 -1.6 PQQ-dependent catabolism-associated beta-propeller protein compare
ABIE51_RS10760 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Lysobacter sp. OAE881 in agar plate interaction control experiments