Experiment set2S160 for Escherichia coli Nissle 1917

L-Arabinose

Group: carbon source
Media: M9_plus_L-Arabinose + L-Arabinose (20 mM)
Culturing: Ecoli_Nissle_ML2, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/16/2024

Specific Phenotypes

For 14 genes in this experiment

For carbon source L-Arabinose in Escherichia coli Nissle 1917

For carbon source L-Arabinose across organisms

SEED Subsystems

Subsystem	#Specific
L-Arabinose utilization	2
Phosphate metabolism	2
Acetoin, butanediol metabolism	1
Branched-Chain Amino Acid Biosynthesis	1
Folate Biosynthesis	1
Fructose utilization	1
Leucine Biosynthesis	1
Pentose phosphate pathway	1
Peptidoglycan Biosynthesis	1
Proteolysis in bacteria, ATP-dependent	1
Stringent Response, (p)ppGpp metabolism	1
Type IV pilus	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Lysine degradation
• Purine metabolism
• Peptidoglycan biosynthesis
• Pentose phosphate pathway
• Ascorbate and aldarate metabolism
• Ubiquinone and menaquinone biosynthesis
• Valine, leucine and isoleucine biosynthesis
• Nucleotide sugars metabolism
• Glycosaminoglycan degradation
• Butanoate metabolism
• C5-Branched dibasic acid metabolism
• Nicotinate and nicotinamide metabolism
• Pantothenate and CoA biosynthesis
• Biotin metabolism
• Biosynthesis of phenylpropanoids
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of alkaloids derived from histidine and purine
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
aerobactin biosynthesis	4	4	3
NAD phosphorylation and transhydrogenation	2	2	1
polyphosphate metabolism	2	2	1
pyruvate fermentation to (R)-acetoin II	2	1	1
pyruvate fermentation to (S)-acetoin	3	3	1
NAD phosphorylation and dephosphorylation	3	3	1
pyruvate fermentation to (R)-acetoin I	3	2	1
L-valine biosynthesis	4	4	1
peptidoglycan maturation (meso-diaminopimelate containing)	12	6	3
pentose phosphate pathway (non-oxidative branch) I	5	5	1
pyruvate fermentation to isobutanol (engineered)	5	4	1
superpathway of (R,R)-butanediol biosynthesis	5	2	1
ppGpp metabolism	6	6	1
L-isoleucine biosynthesis IV	6	4	1
NAD(P)/NADPH interconversion	6	4	1
superpathway of 2,3-butanediol biosynthesis	6	3	1
L-isoleucine biosynthesis I (from threonine)	7	7	1
L-isoleucine biosynthesis III	7	4	1
pentose phosphate pathway	8	8	1
L-isoleucine biosynthesis II	8	4	1
superpathway of branched chain amino acid biosynthesis	17	17	2
peptidoglycan biosynthesis II (staphylococci)	17	12	2
peptidoglycan biosynthesis IV (Enterococcus faecium)	17	12	2
peptidoglycan biosynthesis V (β-lactam resistance)	17	11	2
formaldehyde assimilation II (assimilatory RuMP Cycle)	9	8	1
Rubisco shunt	10	9	1
peptidoglycan recycling II	10	7	1
mycobactin biosynthesis	11	4	1
peptidoglycan biosynthesis I (meso-diaminopimelate containing)	12	12	1
formaldehyde assimilation III (dihydroxyacetone cycle)	12	10	1
superpathway of L-isoleucine biosynthesis I	13	13	1
peptidoglycan recycling I	14	14	1
Bifidobacterium shunt	15	13	1
peptidoglycan biosynthesis III (mycobacteria)	15	11	1
superpathway of glucose and xylose degradation	17	17	1
superpathway of L-threonine metabolism	18	15	1