Experiment set2S113 for Escherichia coli Nissle 1917

D-Glucose

Group: carbon source
Media: M9_plus_D-Glucose + D-Glucose (20 mM)
Culturing: Ecoli_Nissle_ML2, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/16/2024

Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Glucose in Escherichia coli Nissle 1917

For carbon source D-Glucose across organisms

SEED Subsystems

Subsystem	#Specific
Cysteine Biosynthesis	1
Leucine Biosynthesis	1
Phosphate metabolism	1
Proteolysis in bacteria, ATP-dependent	1
Stringent Response, (p)ppGpp metabolism	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Selenoamino acid metabolism
• Sulfur metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
sulfate activation for sulfonation	2	2	1
polyphosphate metabolism	2	2	1
assimilatory sulfate reduction III	3	3	1
assimilatory sulfate reduction II	3	1	1
sulfite oxidation III	3	1	1
assimilatory sulfate reduction I	4	4	1
assimilatory sulfate reduction IV	4	3	1
selenate reduction	5	2	1
dissimilatory sulfate reduction I (to hydrogen sufide))	5	1	1
ppGpp metabolism	6	6	1
superpathway of sulfur metabolism (Desulfocapsa sulfoexigens)	6	1	1
superpathway of thiosulfate metabolism (Desulfovibrio sulfodismutans)	6	1	1
superpathway of sulfate assimilation and cysteine biosynthesis	9	9	1
superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae)	10	6	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	10	1
superpathway of sulfide oxidation (phototrophic sulfur bacteria)	12	2	1
superpathway of seleno-compound metabolism	19	6	1