Experiment set2S105 for Rhodanobacter denitrificans MT42

Compare to:

R2A_PIPES pH 4.25

Group: pH
Media: R2A, pH=4.3
Culturing: Rhodanobacter_MT42_ML2, 96 well deep well block, Aerobic, at 23 (C), shaken=700 rpm
By: Hans and Hira on 1/10/25
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 2 genes in this experiment

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-glutamine degradation I 1 1 1
L-glutamate biosynthesis I 2 2 1
ammonia assimilation cycle III 3 3 1
UTP and CTP de novo biosynthesis 3 3 1
UTP and CTP dephosphorylation II 3 1 1
superpathway of pyrimidine nucleobases salvage 4 4 1
L-asparagine biosynthesis III (tRNA-dependent) 4 3 1
glutaminyl-tRNAgln biosynthesis via transamidation 4 3 1
L-glutamate and L-glutamine biosynthesis 7 6 1
UTP and CTP dephosphorylation I 7 5 1
L-citrulline biosynthesis 8 6 1
superpathway of pyrimidine ribonucleotides de novo biosynthesis 9 9 1
superpathway of pyrimidine ribonucleosides salvage 10 7 1
superpathway of L-citrulline metabolism 12 8 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 18 18 1
superpathway of histidine, purine, and pyrimidine biosynthesis 46 44 1