Experiment set2IT096 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21405 -6.4 -4.4 3-isopropylmalate dehydratase compare
AO356_08635 -6.1 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
AO356_21440 -5.9 -7.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_09815 -5.8 -4.0 imidazoleglycerol-phosphate dehydratase compare
AO356_13410 -5.8 -7.9 homoserine O-acetyltransferase compare
AO356_22200 -5.7 -5.6 sirohydrochlorin ferrochelatase compare
AO356_09015 -5.5 -14.6 transcriptional regulator compare
AO356_14420 -5.5 -12.2 anthranilate synthase compare
AO356_09525 -5.4 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_09520 -5.4 -3.7 phosphoribosyl-AMP cyclohydrolase compare
AO356_18275 -5.3 -11.4 ornithine carbamoyltransferase compare
AO356_21415 -5.3 -11.3 3-isopropylmalate dehydrogenase compare
AO356_06970 -5.3 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_18325 -5.1 -12.4 argininosuccinate synthase compare
AO356_14435 -5.1 -7.0 anthranilate phosphoribosyltransferase compare
AO356_10300 -5.1 -8.1 3-phosphoglycerate dehydrogenase compare
AO356_09810 -5.1 -3.5 imidazole glycerol phosphate synthase subunit HisH compare
AO356_16175 -5.0 -6.0 acetolactate synthase 3 regulatory subunit compare
AO356_12525 -5.0 -9.6 acetylglutamate kinase compare
AO356_13405 -5.0 -10.7 methionine biosynthesis protein MetW compare
AO356_13085 -5.0 -10.1 N-acetylglutamate synthase compare
AO356_09800 -4.9 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_10915 -4.9 -10.8 tryptophan synthase subunit beta compare
AO356_02265 -4.9 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_06965 -4.8 -8.7 histidinol dehydrogenase compare
AO356_10910 -4.7 -9.6 tryptophan synthase subunit alpha compare
AO356_13605 -4.7 -4.5 5,10-methylenetetrahydrofolate reductase compare
AO356_21465 -4.6 -4.5 amidophosphoribosyltransferase compare
AO356_00555 -4.6 -11.9 sulfite reductase compare
AO356_09425 -4.6 -7.0 malate dehydrogenase compare
AO356_12780 -4.5 -8.1 argininosuccinate lyase compare
AO356_08735 -4.5 -13.8 phosphoserine phosphatase compare
AO356_16075 -4.5 -3.1 Fis family transcriptional regulator compare
AO356_19045 -4.5 -14.0 chemotaxis protein CheY compare
AO356_12520 -4.4 -3.1 orotate phosphoribosyltransferase compare
AO356_14430 -4.4 -9.2 anthranilate synthase compare
AO356_14295 -4.3 -3.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_13250 -4.3 -11.1 dihydroxy-acid dehydratase compare
AO356_09540 -4.3 -2.9 twin-arginine protein translocation system subunit TatC compare
AO356_19090 -4.3 -4.1 phosphoribosylaminoimidazole synthetase compare
AO356_21400 -4.3 -5.9 isopropylmalate isomerase compare
AO356_16180 -4.3 -15.2 ketol-acid reductoisomerase compare
AO356_00560 -4.2 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_06550 -4.2 -10.6 2-isopropylmalate synthase compare
AO356_21470 -4.2 -7.0 O-succinylhomoserine sulfhydrylase compare
AO356_16170 -4.1 -11.9 acetolactate synthase 3 catalytic subunit compare
AO356_10340 -4.0 -14.1 phosphoserine phosphatase compare
AO356_19795 -4.0 -2.7 glycerol-3-phosphate dehydrogenase compare
AO356_14440 -3.9 -3.9 indole-3-glycerol-phosphate synthase compare
AO356_20830 -3.9 -4.6 phosphoadenosine phosphosulfate reductase compare
AO356_02175 -3.8 -8.5 transaldolase compare
AO356_27215 -3.8 -3.9 hypothetical protein compare
AO356_19085 -3.6 -9.0 phosphoribosylglycinamide formyltransferase compare
AO356_06960 -3.6 -7.9 histidinol-phosphate aminotransferase compare
AO356_00355 -3.5 -7.9 chemotaxis protein CheY compare
AO356_19425 -3.5 -2.0 lipid A biosynthesis lauroyl acyltransferase compare
AO356_10000 -3.4 -6.9 hypothetical protein compare
AO356_12945 -3.4 -5.7 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_17520 -3.3 -2.3 phosphoribosylformylglycinamidine synthase compare
AO356_18020 -3.3 -4.5 ATP-dependent DNA helicase RuvA compare
AO356_15165 -3.3 -3.8 protein cII compare
AO356_01750 -3.3 -4.4 ATP-dependent Clp protease proteolytic subunit compare
AO356_21330 -3.2 -9.4 aromatic amino acid aminotransferase compare
AO356_10005 -3.2 -11.1 branched-chain amino acid permease (azaleucine resistance) compare
AO356_07915 -3.2 -3.8 exodeoxyribonuclease V subunit beta compare
AO356_01745 -3.1 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_27180 -3.1 -6.5 hypothetical protein compare
AO356_17950 -3.1 -10.4 histidine kinase compare
AO356_08930 -3.1 -4.1 heptose kinase compare
AO356_16665 -3.0 -12.5 sulfate adenylyltransferase compare
AO356_11315 -3.0 -2.0 shikimate dehydrogenase compare
AO356_19925 -2.9 -10.6 AsnC family transcriptional regulator compare
AO356_16080 -2.9 -14.6 ATPase compare
AO356_27210 -2.9 -10.8 hypothetical protein compare
AO356_19900 -2.9 -11.3 lysine transporter LysE compare
AO356_08235 -2.7 -9.8 histidine kinase compare
AO356_16670 -2.6 -11.8 adenylylsulfate kinase compare
AO356_11450 -2.6 -3.0 cytochrome C compare
AO356_11025 -2.6 -7.0 transcriptional regulator PhoU compare
AO356_12380 -2.6 -8.9 ATP-dependent DNA helicase RecG compare
AO356_02465 -2.6 -3.0 carbonate dehydratase compare
AO356_06685 -2.6 -2.4 preprotein translocase subunit YajC compare
AO356_02290 -2.5 -4.6 TetR family transcriptional regulator compare
AO356_19050 -2.5 -3.7 cysteine synthase compare
AO356_09795 -2.4 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
AO356_17065 -2.4 -2.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_13685 -2.4 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_27205 -2.3 -8.9 hypothetical protein compare
AO356_03800 -2.3 -3.1 histidine kinase compare
AO356_17075 -2.2 -3.3 cytochrome C compare
AO356_24845 -2.2 -3.8 ATPase compare
AO356_07480 -2.2 -3.2 carbamoyl phosphate synthase large subunit compare
AO356_17070 -2.2 -2.9 cytochrome B compare
AO356_01555 -2.2 -9.1 acyl-CoA dehydrogenase compare
AO356_12640 -2.1 -2.4 cytochrome C compare
AO356_04560 -2.1 -3.4 serine peptidase compare
AO356_18025 -2.1 -3.7 ATP-dependent DNA helicase RuvB compare
AO356_12375 -2.1 -9.8 histidine kinase compare
AO356_02800 -2.0 -4.1 transporter compare
AO356_05995 -2.0 -3.3 hypothetical protein compare
AO356_20475 -2.0 -2.6 hypothetical protein compare
AO356_02825 -1.9 -10.3 phosphoenolpyruvate synthase conserved
AO356_14135 -1.9 -11.5 biotin synthase compare
AO356_27230 -1.9 -4.9 hypothetical protein compare
AO356_16185 -1.9 -5.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_08875 -1.8 -3.1 toluene tolerance protein compare
AO356_07910 -1.8 -2.4 exodeoxyribonuclease V subunit alpha compare
AO356_07005 -1.8 -1.9 ABC transporter ATP-binding protein compare
AO356_06385 -1.8 -4.2 recombinase XerD compare
AO356_08480 -1.8 -8.4 ABC transporter ATP-binding protein conserved
AO356_03070 -1.8 -10.5 histidine kinase compare
AO356_27250 -1.8 -4.8 hypothetical protein compare
AO356_10140 -1.7 -7.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_05670 -1.7 -3.3 recombinase RecA compare
AO356_18000 -1.7 -1.8 FmdB family transcriptional regulator compare
AO356_07195 -1.6 -5.7 GntR family transcriptional regulator compare
AO356_12725 -1.6 -4.6 recombinase XerC compare
AO356_11610 -1.6 -2.3 glycerol acyltransferase compare
AO356_12990 -1.6 -6.7 5-formyltetrahydrofolate cyclo-ligase compare
AO356_08895 -1.6 -2.3 GlcNAc-PI de-N-acetylase compare
AO356_15260 -1.5 -1.6 dehydratase compare
AO356_08490 -1.5 -11.3 branched-chain amino acid ABC transporter permease conserved
AO356_10170 -1.5 -3.0 chemotaxis protein CheY compare
AO356_21410 -1.5 -2.3 SAM-dependent methyltransferase compare
AO356_01705 -1.5 -6.5 hypothetical protein compare
AO356_08500 -1.5 -10.7 amino acid ABC transporter substrate-binding protein conserved
AO356_08585 -1.5 -3.5 50S ribosomal protein L9 compare
AO356_13485 -1.5 -2.9 chemotaxis protein CheY compare
AO356_04550 -1.5 -3.1 response regulator SirA compare
AO356_03405 -1.5 -4.0 serine acetyltransferase compare
AO356_08905 -1.5 -2.2 glycosyl transferase compare
AO356_09010 -1.4 -11.0 proline:sodium symporter PutP conserved
AO356_05630 -1.4 -3.3 LysR family transcriptional regulator compare
AO356_08495 -1.4 -9.8 branched-chain amino acid transporter permease subunit LivH conserved
AO356_08485 -1.4 -7.4 ABC transporter ATP-binding protein compare
AO356_12515 -1.4 -3.2 exodeoxyribonuclease III compare
AO356_19165 -1.4 -3.6 adenosylcobinamide kinase compare
AO356_08275 -1.4 -3.8 precorrin isomerase compare
AO356_06575 -1.4 -3.0 outer membrane protein assembly factor BamB compare
AO356_18730 -1.4 -7.1 arginine N-succinyltransferase compare
AO356_11625 -1.4 -8.6 GABA permease conserved
AO356_30345 -1.3 -4.5 IclR family transcriptional regulator compare
AO356_07020 -1.3 -1.9 LPS export ABC transporter periplasmic protein LptC compare
AO356_12895 -1.3 -11.0 polyphosphate kinase compare
AO356_23155 -1.3 -7.3 RpiR family transcriptional regulator compare
AO356_03500 -1.3 -3.9 3-oxoacyl-ACP reductase compare
AO356_11680 -1.3 -2.5 chromosome partitioning protein ParB compare
AO356_06995 -1.3 -4.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_06005 -1.3 -3.3 zinc metallopeptidase RseP compare
AO356_02460 -1.3 -2.3 hypothetical protein compare
AO356_10330 -1.3 -9.1 threonine dehydratase compare
AO356_07920 -1.2 -4.8 exodeoxyribonuclease V subunit gamma compare
AO356_08645 -1.2 -4.2 hypothetical protein compare
AO356_06990 -1.2 -3.8 toluene tolerance protein compare
AO356_20175 -1.2 -1.9 3-oxoacyl-ACP synthase compare
AO356_12730 -1.2 -3.3 hypothetical protein compare
AO356_04570 -1.2 -3.7 RNA polymerase subunit sigma compare
AO356_20875 -1.2 -5.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_19175 -1.2 -3.8 alpha-ribazole phosphatase compare
AO356_03620 -1.2 -2.2 cytochrome C compare
AO356_27840 -1.2 -6.4 sodium:proton antiporter compare
AO356_02190 -1.2 -5.2 hypothetical protein compare
AO356_04330 -1.2 -4.2 allophanate hydrolase compare
AO356_19060 -1.1 -8.7 (p)ppGpp synthetase compare
AO356_09490 -1.1 -3.4 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO356_06660 -1.1 -5.3 RNA methyltransferase compare
AO356_04335 -1.1 -5.7 hypothetical protein compare
AO356_00920 -1.1 -2.2 cold-shock protein compare
AO356_02315 -1.1 -3.4 DNA topoisomerase I compare
AO356_06580 -1.1 -1.5 GTP-binding protein compare
AO356_17485 -1.1 -3.7 elongation factor 4 compare
AO356_08640 -1.1 -3.7 membrane protease HflC compare
AO356_21125 -1.1 -3.8 cyclic peptide transporter compare
AO356_28255 -1.1 -1.8 class III aminotransferase compare
AO356_27200 -1.1 -3.5 hypothetical protein compare
AO356_11675 -1.1 -6.1 chromosome partitioning protein compare
AO356_11585 -1.0 -2.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_04325 -1.0 -2.5 allophanate hydrolase compare
AO356_10075 -1.0 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_05080 -1.0 -1.5 peptide deformylase compare
AO356_08290 -1.0 -2.9 precorrin-6Y C5,15-methyltransferase compare
AO356_12025 -1.0 -6.7 pyruvate carboxylase subunit B compare
AO356_18245 -1.0 -4.0 DeoR family transcriptional regulator compare
AO356_27245 -1.0 -1.0 hypothetical protein compare
AO356_03595 -1.0 -1.6 carbon storage regulator compare
AO356_27240 -1.0 -2.3 hypothetical protein compare
AO356_08470 -1.0 -7.2 N-acylglucosamine 2-epimerase compare
AO356_00525 -1.0 -1.9 cobalamin biosynthesis protein CobE compare
AO356_17985 -1.0 -3.7 cold-shock protein compare
AO356_21275 -1.0 -1.9 peptidase compare
AO356_16085 -1.0 -2.3 MFS transporter compare
AO356_07105 -1.0 -5.5 hypothetical protein compare
AO356_03725 -1.0 -2.6 histidine kinase compare
AO356_10985 -0.9 -3.8 chorismate--pyruvate lyase compare
AO356_05760 -0.9 -2.7 phage tail protein compare
AO356_01755 -0.9 -2.2 trigger factor compare
AO356_03180 -0.9 -2.6 CysB family transcriptional regulator compare
AO356_23645 -0.9 -1.8 hypothetical protein compare
AO356_17080 -0.9 -6.3 stringent starvation protein A compare
AO356_16060 -0.9 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source L-Proline in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Proline across organisms