Experiment set2IT096 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Spectinomycin dihydrochloride pentahydrate 2 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_1381 +0.9 4.1 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2713 +0.9 2.3 hypothetical protein compare
Ga0059261_1380 +0.8 6.9 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_1860 +0.8 1.9 Transposase compare
Ga0059261_3605 +0.8 1.9 tRNA compare
Ga0059261_0304 +0.8 2.3 Bacterioferritin-associated ferredoxin compare
Ga0059261_1774 +0.8 1.1 hypothetical protein compare
Ga0059261_1601 +0.7 2.4 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_1545 +0.7 3.8 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_1569 +0.7 2.9 Response regulator receiver domain compare
Ga0059261_1490 +0.7 5.8 Glycosyltransferase compare
Ga0059261_1050 +0.7 2.0 hypothetical protein compare
Ga0059261_0344 +0.7 2.1 Molecular chaperone (small heat shock protein) compare
Ga0059261_4190 +0.7 5.2 Periplasmic protein involved in polysaccharide export compare
Ga0059261_3280 +0.6 1.1 Uncharacterized conserved protein compare
Ga0059261_3659 +0.6 2.9 PqqD family protein, HPr-rel-A system compare
Ga0059261_3521 +0.6 4.8 Major Facilitator Superfamily compare
Ga0059261_1610 +0.6 4.0 CBS domain/Transporter associated domain compare
Ga0059261_2929 +0.6 1.6 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_2109 +0.6 2.4 hypothetical protein compare
Ga0059261_1595 +0.6 5.1 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_3364 +0.6 4.9 PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family compare
Ga0059261_4194 +0.6 3.2 Type II secretory pathway, component ExeA (predicted ATPase) compare
Ga0059261_2368 +0.5 1.2 Phage baseplate assembly protein W compare
Ga0059261_1724 +0.5 1.7 hypothetical protein compare
Ga0059261_3783 +0.5 3.0 hypothetical protein compare
Ga0059261_4195 +0.5 4.2 polysaccharide deacetylase family protein, PEP-CTERM locus subfamily compare
Ga0059261_3658 +0.5 4.5 hypothetical protein compare
Ga0059261_2413 +0.5 1.6 hypothetical protein compare
Ga0059261_2243 +0.5 1.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_4001 +0.5 3.4 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Ga0059261_3238 +0.5 1.4 hypothetical protein compare
Ga0059261_0725 +0.5 1.4 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_4199 +0.5 4.2 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3536 +0.5 2.7 hypothetical protein compare
Ga0059261_1904 +0.5 1.2 Asparaginase compare
Ga0059261_3227 +0.5 1.1 GTP-binding protein YchF compare
Ga0059261_1360 +0.5 3.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_0321 +0.5 1.2 hypothetical protein compare
Ga0059261_4196 +0.5 3.7 FemAB-related protein, PEP-CTERM system-associated compare
Ga0059261_0733 +0.5 2.0 Cell division protein ZapA compare
Ga0059261_4193 +0.5 4.1 hypothetical protein compare
Ga0059261_1408 +0.5 1.3 Domain of unknown function (DUF4168) compare
Ga0059261_0246 +0.4 0.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
Ga0059261_1361 +0.4 3.8 sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Ga0059261_2020 +0.4 3.4 Glycosyltransferase compare
Ga0059261_4192 +0.4 1.4 ATPases involved in chromosome partitioning compare
Ga0059261_2680 +0.4 1.1 hypothetical protein compare
Ga0059261_0659 +0.4 2.0 transcriptional regulator, HxlR family compare
Ga0059261_0726 +0.4 1.5 hypothetical protein compare
Ga0059261_3356 +0.4 0.8 hypothetical protein compare
Ga0059261_2019 +0.4 2.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3660 +0.4 3.4 HprK-related kinase A compare
Ga0059261_1831 +0.4 1.0 hypothetical protein compare
Ga0059261_3400 +0.4 3.4 diguanylate cyclase (GGDEF) domain compare
Ga0059261_3909 +0.4 1.2 Predicted membrane protein compare
Ga0059261_3661 +0.4 3.2 Uncharacterised nucleotidyltransferase compare
Ga0059261_0268 +0.4 2.2 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Ga0059261_1335 +0.4 1.9 Predicted ATPase compare
Ga0059261_4185 +0.4 0.9 hypothetical protein compare
Ga0059261_3566 +0.4 1.6 hypothetical protein compare
Ga0059261_3362 +0.4 3.5 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_0447 +0.4 2.4 SnoaL-like domain compare
Ga0059261_3371 +0.4 1.1 hypothetical protein compare
Ga0059261_1546 +0.4 2.4 MerC mercury resistance protein compare
Ga0059261_4197 +0.4 3.0 sugar transferase, PEP-CTERM/EpsH1 system associated compare
Ga0059261_2244 +0.4 3.2 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_0393 +0.4 1.2 hypothetical protein compare
Ga0059261_3693 +0.4 2.9 Putative arginyl-tRNA:protein arginylyltransferase compare
Ga0059261_3361 +0.4 3.4 hypothetical protein compare
Ga0059261_3545 +0.4 1.2 hypothetical protein compare
Ga0059261_4171 +0.4 1.7 redox-sensitive transcriptional activator SoxR compare
Ga0059261_2871 +0.4 2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_2194 +0.4 1.5 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
Ga0059261_3518 +0.4 3.0 RND family efflux transporter, MFP subunit compare
Ga0059261_1739 +0.4 1.9 Conjugal transfer protein TraD compare
Ga0059261_2840 +0.4 1.7 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0612 +0.3 1.6 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_2755 +0.3 2.0 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
Ga0059261_1527 +0.3 0.9 hypothetical protein compare
Ga0059261_3994 +0.3 1.3 hypothetical protein compare
Ga0059261_2531 +0.3 1.5 conserved hypothetical integral membrane protein compare
Ga0059261_3125 +0.3 1.0 Imidazoleglycerol-phosphate synthase compare
Ga0059261_1263 +0.3 1.2 hypothetical protein compare
Ga0059261_3556 +0.3 1.2 transcriptional regulator, TetR family compare
Ga0059261_2548 +0.3 1.4 tRNA compare
Ga0059261_2076 +0.3 1.1 hypothetical protein compare
Ga0059261_3451 +0.3 0.8 hypothetical protein compare
Ga0059261_2663 +0.3 0.7 Domain of unknown function (DUF718) compare
Ga0059261_0252 +0.3 1.0 SpoIIAA-like compare
Ga0059261_0895 +0.3 1.9 Protein of unknown function (DUF2809) compare
Ga0059261_3132 +0.3 2.0 hypothetical protein compare
Ga0059261_3061 +0.3 2.1 Type IV secretory pathway, protease TraF compare
Ga0059261_3668 +0.3 2.0 ABC transporter compare
Ga0059261_2589 +0.3 1.7 Protein of unknown function (DUF2493) compare
Ga0059261_2018 +0.3 2.1 hypothetical protein compare
Ga0059261_0894 +0.3 1.5 hypothetical protein compare
Ga0059261_1253 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_4191 +0.3 1.9 polysaccharide chain length determinant protein, PEP-CTERM locus subfamily compare
Ga0059261_3498 +0.3 1.4 Iron-sulfur cluster assembly accessory protein compare
Ga0059261_3839 +0.3 1.6 hypothetical protein compare
Ga0059261_0955 +0.3 1.8 PilZ domain compare
Ga0059261_1334 +0.3 1.5 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Ga0059261_0064 +0.3 1.9 Domain of unknown function (DUF4112) compare
Ga0059261_3023 +0.3 2.1 Predicted transcriptional regulators compare
Ga0059261_1488 +0.3 2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_0896 +0.3 1.7 Citrate lyase beta subunit compare
Ga0059261_1039 +0.3 1.9 hypothetical protein compare
Ga0059261_2685 +0.3 1.7 Putative translation initiation inhibitor, yjgF family compare
Ga0059261_0140 +0.3 2.1 tRNA-U20-dihydrouridine synthase compare
Ga0059261_2987 +0.3 0.8 hypothetical protein compare
Ga0059261_3727 +0.3 1.9 hypothetical protein compare
Ga0059261_0657 +0.3 0.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_3670 +0.3 1.4 tRNA compare
Ga0059261_0848 +0.3 2.0 transcriptional regulator, TetR family compare
Ga0059261_1303 +0.3 1.8 hypothetical protein compare
Ga0059261_1089 +0.3 1.5 Flagellar hook-length control protein compare
Ga0059261_1939 +0.3 0.5 putative phosphoesterase compare
Ga0059261_0087 +0.3 0.8 hypothetical protein compare
Ga0059261_0039 +0.3 1.8 His Kinase A (phospho-acceptor) domain compare
Ga0059261_1016 +0.3 0.9 Cupin domain compare
Ga0059261_2745 +0.3 2.4 Myo-inositol-1-phosphate synthase compare
Ga0059261_3886 +0.3 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_2735 +0.3 1.1 Glyoxalase-like domain compare
Ga0059261_0619 +0.3 1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Ga0059261_3598 +0.3 1.1 Flp pilus assembly protein, pilin Flp compare
Ga0059261_2951 +0.3 0.8 Heavy-metal resistance compare
Ga0059261_3432 +0.3 1.2 leucyl/phenylalanyl-tRNA--protein transferase compare
Ga0059261_0723 +0.3 1.2 hypothetical protein compare
Ga0059261_1070 +0.3 1.3 pseudouridine synthase compare
Ga0059261_1085 +0.3 1.9 hypothetical protein compare
Ga0059261_2612 +0.3 1.2 Uncharacterized secreted protein compare
Ga0059261_3562 +0.3 1.0 Glycosyltransferase compare
Ga0059261_3261 +0.3 1.9 Protein of unknown function (DUF938) compare
Ga0059261_0602 +0.3 2.0 Predicted membrane protein compare
Ga0059261_0127 +0.3 1.5 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Ga0059261_3620 +0.3 0.9 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_0340 +0.3 1.2 Bacterial protein of unknown function (DUF937) compare
Ga0059261_4029 +0.3 1.8 hypothetical protein compare
Ga0059261_3208 +0.3 0.7 hypothetical protein compare
Ga0059261_0287 +0.3 1.6 hypothetical protein compare
Ga0059261_0745 +0.3 1.1 Uncharacterized membrane protein, required for colicin V production compare
Ga0059261_0464 +0.2 0.8 hypothetical protein compare
Ga0059261_2044 +0.2 1.9 peptide chain release factor 3 compare
Ga0059261_2478 +0.2 1.3 Uncharacterized conserved protein compare
Ga0059261_1742 +0.2 1.6 transcriptional regulator, MucR family compare
Ga0059261_3520 +0.2 2.1 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_0223 +0.2 0.5 Peptidase inhibitor I78 family compare
Ga0059261_0679 +0.2 1.9 Protein related to penicillin acylase compare
Ga0059261_3367 +0.2 1.3 hypothetical protein compare
Ga0059261_4054 +0.2 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_4167 +0.2 1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Ga0059261_1095 +0.2 1.4 Flagellar motor switch protein compare
Ga0059261_2992 +0.2 1.2 Biopolymer transport protein compare
Ga0059261_0305 +0.2 1.2 bacterioferritin compare
Ga0059261_3308 +0.2 0.8 Uncharacterized conserved protein compare
Ga0059261_2088 +0.2 1.3 Flagellar motor component compare
Ga0059261_3638 +0.2 0.8 Predicted integral membrane protein (DUF2282) compare
Ga0059261_4169 +0.2 1.1 Kef-type K+ transport system, predicted NAD-binding component compare
Ga0059261_3335 +0.2 0.9 hypothetical protein compare
Ga0059261_3706 +0.2 0.9 RF-1 domain compare
Ga0059261_0889 +0.2 0.6 Cold shock proteins compare
Ga0059261_3287 +0.2 1.9 Topoisomerase IB compare
Ga0059261_0257 +0.2 1.4 hypothetical protein compare
Ga0059261_3230 +0.2 1.1 hypothetical protein compare
Ga0059261_3078 +0.2 1.8 Type IV secretory pathway, TrbF components compare
Ga0059261_0488 +0.2 1.5 MerC mercury resistance protein compare
Ga0059261_1315 +0.2 1.4 Alpha/beta hydrolase family compare
Ga0059261_3368 +0.2 1.0 Predicted transcriptional regulator compare
Ga0059261_2095 +0.2 1.5 Flagellar basal body L-ring protein compare
Ga0059261_2438 +0.2 1.6 Putative lumazine-binding compare
Ga0059261_0921 +0.2 0.5 hypothetical protein compare
Ga0059261_3401 +0.2 1.7 Domain of unknown function (DUF4154) compare
Ga0059261_0451 +0.2 0.7 hypothetical protein compare
Ga0059261_3387 +0.2 1.7 hypothetical protein compare
Ga0059261_1122 +0.2 0.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Ga0059261_0811 +0.2 0.7 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_4080 +0.2 1.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Ga0059261_1856 +0.2 1.1 hypothetical protein compare
Ga0059261_1261 +0.2 1.0 hypothetical protein compare
Ga0059261_1413 +0.2 1.6 Uncharacterized protein involved in ubiquinone biosynthesis compare
Ga0059261_1844 +0.2 1.5 O-6-methylguanine DNA methyltransferase compare
Ga0059261_1195 +0.2 0.9 Co/Zn/Cd efflux system component compare
Ga0059261_1021 +0.2 0.9 hypothetical protein compare
Ga0059261_1145 +0.2 0.6 flagella basal body P-ring formation protein FlgA compare
Ga0059261_2089 +0.2 1.1 flagellar basal-body rod protein FlgB compare
Ga0059261_0272 +0.2 0.7 Uncharacterized small protein compare
Ga0059261_1574 +0.2 0.9 Superfamily II DNA and RNA helicases compare
Ga0059261_0153 +0.2 0.7 Serine acetyltransferase compare
Ga0059261_1181 +0.2 1.1 hypothetical protein compare
Ga0059261_3006 +0.2 0.9 hypothetical protein compare
Ga0059261_0984 +0.2 1.8 2OG-Fe(II) oxygenase superfamily/Sel1 repeat compare
Ga0059261_1803 +0.2 1.2 Domain of unknown function (DUF4136) compare
Ga0059261_2658 +0.2 0.8 Transcriptional regulators compare
Ga0059261_3784 +0.2 1.8 DNA mismatch repair protein MutS compare
Ga0059261_2052 +0.2 1.0 siroheme synthase, N-terminal domain compare
Ga0059261_0525 +0.2 0.5 Transcriptional regulator compare
Ga0059261_2758 +0.2 1.1 Uncharacterized membrane-associated protein compare
Ga0059261_2981 +0.2 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0794 +0.2 1.4 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Sphingomonas koreensis DSMZ 15582

For stress Spectinomycin dihydrochloride pentahydrate across organisms