Experiment set2IT095 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic, chopping recovery; Green bean

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.4 -2.5 anthranilate synthase, component II compare
Psyr_1984 -5.4 -3.2 3-isopropylmalate dehydratase, small subunit compare
Psyr_4270 -5.3 -3.6 serine hydroxymethyltransferase compare
Psyr_4774 -4.9 -2.2 Hypothetical protein compare
Psyr_1983 -4.8 -5.7 3-isopropylmalate dehydratase, large subunit compare
Psyr_4580 -4.7 -3.2 anthranilate phosphoribosyltransferase compare
Psyr_0951 -4.7 -3.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4609 -4.6 -13.1 anthranilate synthase, component I compare
Psyr_1614 -4.6 -3.1 lipid A biosynthesis acyltransferase compare
Psyr_1669 -4.5 -5.4 O-succinylhomoserine sulfhydrylase compare
Psyr_4116 -4.5 -1.7 Transport-associated protein compare
Psyr_0377 -4.4 -4.3 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0473 -4.2 -7.1 Methionine biosynthesis MetW compare
Psyr_3667 -4.2 -3.2 conserved hypothetical protein compare
Psyr_4407 -4.1 -2.8 phosphoribosylamine--glycine ligase compare
Psyr_0469 -4.0 -11.2 dihydroxyacid dehydratase compare
Psyr_1269 -4.0 -2.7 phosphoribosylformylglycinamidine synthase compare
Psyr_1985 -4.0 -9.5 3-isopropylmalate dehydrogenase compare
Psyr_1663 -3.9 -3.8 phosphoribosylanthranilate isomerase compare
Psyr_1613 -3.9 -5.3 septum site-determining protein MinC compare
Psyr_0848 -3.9 -10.2 ketol-acid reductoisomerase compare
Psyr_0034 -3.7 -3.6 tryptophan synthase, beta chain compare
Psyr_0378 -3.7 -7.9 Glycosyl transferase, family 2 compare
Psyr_4133 -3.7 -14.7 histidinol dehydrogenase compare
Psyr_0846 -3.7 -12.6 acetolactate synthase, large subunit compare
Psyr_0167 -3.6 -4.2 hypothetical protein compare
Psyr_4224 -3.6 -2.1 conserved hypothetical protein compare
Psyr_4132 -3.6 -10.9 histidinol phosphate aminotransferase apoenzyme compare
Psyr_4897 -3.4 -4.7 imidazoleglycerol-phosphate dehydratase compare
Psyr_3008 -3.4 -6.4 Undecaprenyl-diphosphatase compare
Psyr_4134 -3.4 -9.2 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_1247 -3.4 -3.1 conserved hypothetical protein compare
Psyr_4991 -3.3 -2.3 hypothetical protein compare
Psyr_4852 -3.3 -7.9 D-3-phosphoglycerate dehydrogenase compare
Psyr_1668 -3.3 -6.5 amidophosphoribosyltransferase compare
Psyr_0033 -3.2 -5.3 tryptophan synthase, alpha chain compare
Psyr_0917 -3.2 -4.4 ABC-2 compare
Psyr_0704 -3.2 -8.3 glutamate 5-kinase compare
Psyr_1350 -3.1 -4.6 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1447 -3.1 -2.7 conserved hypothetical protein compare
Psyr_0915 -3.0 -10.1 NAD-dependent epimerase/dehydratase compare
Psyr_0474 -3.0 -8.7 homoserine O-acetyltransferase compare
Psyr_4894 -3.0 -6.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0826 -2.9 -6.7 glucose-6-phosphate isomerase compare
Psyr_1487 -2.9 -3.0 conserved hypothetical protein compare
Psyr_2613 -2.9 -8.1 Cyclic peptide transporter compare
Psyr_1373 -2.9 -2.0 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_1410 -2.8 -5.3 Holliday junction DNA helicase RuvB compare
Psyr_4687 -2.8 -7.7 biotin synthase compare
Psyr_1097 -2.8 -2.3 glycine cleavage system H protein compare
Psyr_1056 -2.8 -4.3 Poly(beta-D-mannuronate) lyase compare
Psyr_0529 -2.8 -5.0 Glycosyl transferase, group 1 compare
Psyr_4686 -2.8 -5.3 8-amino-7-oxononanoate synthase compare
Psyr_4730 -2.8 -1.9 FecR protein compare
Psyr_0847 -2.8 -6.9 acetolactate synthase, small subunit compare
Psyr_1197 -2.7 -5.6 type III secretion protein HrpE compare
Psyr_1212 -2.7 -2.3 type III secretion protein HrpO compare
Psyr_0386 -2.7 -4.9 phosphoribosyl-AMP cyclohydrolase compare
Psyr_4340 -2.7 -9.2 phosphomethylpyrimidine kinase, putative compare
Psyr_4754 -2.7 -2.2 16S rRNA m(2)G-966 methyltransferase compare
Psyr_4341 -2.7 -7.7 thiamine-phosphate diphosphorylase compare
Psyr_1907 -2.7 -3.4 GTP cyclohydrolase I compare
Psyr_1217 -2.7 -3.6 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_0219 -2.7 -8.1 phosphomannomutase compare
Psyr_3958 -2.7 -10.3 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_1544 -2.6 -4.7 SirA-like protein compare
Psyr_1121 -2.6 -2.0 6-phosphogluconolactonase compare
Psyr_4896 -2.6 -5.3 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_1747 -2.5 -5.3 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_3179 -2.5 -3.3 DNA translocase FtsK compare
Psyr_4203 -2.5 -1.7 SsrA-binding protein compare
Psyr_1257 -2.5 -9.0 2-isopropylmalate synthase compare
Psyr_0531 -2.5 -2.2 LmbE-like protein compare
Psyr_2980 -2.5 -3.7 UDP-glucose pyrophosphorylase compare
Psyr_1408 -2.5 -2.9 Holliday junction endonuclease RuvC compare
Psyr_4683 -2.5 -4.4 dethiobiotin synthase compare
Psyr_3675 -2.5 -3.2 adenosylcobinamide kinase compare
Psyr_3462 -2.5 -2.2 conserved hypothetical protein compare
Psyr_0528 -2.4 -3.1 Carbamoyltransferase compare
Psyr_3896 -2.4 -1.9 BFD-like [2Fe-2S]-binding region compare
Psyr_4418 -2.4 -2.8 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_4684 -2.4 -2.6 biotin synthesis protein BioC compare
Psyr_4408 -2.4 -9.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0918 -2.4 -9.7 ABC transporter compare
Psyr_0557 -2.4 -5.3 phosphoserine phosphatase compare
Psyr_3427 -2.3 -2.4 conserved hypothetical protein compare
Psyr_0920 -2.3 -14.7 Glycosyl transferase, group 1 compare
Psyr_4194 -2.3 -4.4 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_1190 -2.3 -2.0 type III transcriptional regulator HrpR compare
Psyr_2180 -2.2 -3.7 transcriptional regulator, LysR family compare
Psyr_4130 -2.2 -9.3 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_1953 -2.2 -1.4 conserved hypothetical protein compare
Psyr_4740 -2.2 -4.9 thiazole-phosphate synthase compare
Psyr_0103 -2.2 -4.2 conserved hypothetical protein compare
Psyr_0025 -2.2 -4.5 shikimate dehydrogenase compare
Psyr_4369 -2.1 -3.8 glutamate-5-semialdehyde dehydrogenase compare
Psyr_1751 -2.1 -4.4 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4144 -2.1 -1.3 Protein of unknown function DUF1239 compare
Psyr_2266 -2.1 -2.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0385 -2.1 -2.8 phosphoribosyl-ATP pyrophosphatase compare
Psyr_0534 -2.1 -11.2 membrane protein, putative compare
Psyr_0014 -2.1 -3.5 lipid A biosynthesis acyltransferase compare
Psyr_0831 -2.0 -2.3 Two-component response regulator CbrB compare
Psyr_0758 -2.0 -12.7 beta-fructofuranosidase compare
Psyr_3637 -2.0 -7.9 Glycosyl transferase, family 4 compare
Psyr_2474 -2.0 -3.1 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_3193 -2.0 -2.5 Transcription factor jumonji, jmjC compare
Psyr_4490 -2.0 -1.8 transcriptional regulator, DeoR family compare
Psyr_4843 -2.0 -4.3 NUDIX hydrolase compare
Psyr_0576 -2.0 -1.8 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_4895 -1.9 -2.9 conserved hypothetical protein compare
Psyr_3028 -1.9 -1.9 Protein of unknown function DUF28 compare
Psyr_3678 -1.9 -5.8 adenosylcobinamide-phosphate synthase compare
Psyr_1419 -1.9 -3.1 preQ(0) biosynthesis protein QueC compare
Psyr_0919 -1.9 -8.6 Chromosome segregation ATPase-like protein compare
Psyr_1109 -1.9 -6.4 6-phosphogluconate dehydratase compare
Psyr_5132 -1.9 -2.4 Glucose-inhibited division protein A subfamily compare
Psyr_1211 -1.9 -3.7 type III secretion protein HrpP compare
Psyr_3618 -1.9 -1.6 Catalytic LigB subunit of aromatic ring-opening dioxygenase compare
Psyr_2327 -1.8 -2.3 GTP cyclohydrolase subunit MoaA compare
Psyr_3636 -1.8 -8.8 Polysaccharide biosynthesis protein CapD compare
Psyr_4143 -1.8 -1.2 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_2360 -1.8 -2.2 CBS compare
Psyr_1914 -1.8 -7.9 transaldolase compare
Psyr_1748 -1.8 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_1054 -1.8 -5.0 alginate biosynthesis protein AlgJ compare
Psyr_3174 -1.8 -4.1 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_2557 -1.8 -1.0 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_0914 -1.8 -6.4 Glycosyl transferase, group 1 compare
Psyr_1588 -1.8 -3.1 Putative exonuclease, RdgC compare
Psyr_0571 -1.7 -3.1 tRNA isopentenyltransferase compare
Psyr_0550 -1.7 -3.6 Protein of unknown function UPF0227 compare
Psyr_3867 -1.7 -1.8 hypothetical protein compare
Psyr_5133 -1.7 -3.7 tRNA modification GTPase trmE compare
Psyr_0454 -1.7 -4.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_2160 -1.7 -1.9 cold-shock DNA-binding protein family compare
Psyr_1844 -1.7 -3.4 conserved hypothetical protein compare
Psyr_1213 -1.7 -4.8 type III secretion cytoplasmic ATPase HrcN compare
Psyr_3142 -1.7 -2.5 general secretion pathway protein N, putative compare
Psyr_3255 -1.7 -1.9 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_2088 -1.7 -1.5 2-methylaconitate cis-trans isomerase compare
Psyr_3694 -1.7 -4.0 MazG, bacterial compare
Psyr_0464 -1.7 -2.0 hypothetical protein compare
Psyr_4125 -1.7 -2.5 Protein of unknown function DUF1043 compare
Psyr_4091 -1.6 -3.5 8-oxo-dGTPase compare
Psyr_4361 -1.6 -3.2 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_0936 -1.6 -6.7 Glycosyl transferase, group 1 compare
Psyr_1968 -1.6 -2.0 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2396 -1.6 -1.6 Tartrate dehydrogenase compare
Psyr_4627 -1.6 -2.1 dimethyladenosine transferase compare
Psyr_2461 -1.6 -2.7 Uncharacterized conserved protein UCP030820 compare
Psyr_0923 -1.6 -4.7 hypothetical protein compare
Psyr_3698 -1.5 -3.7 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_1208 -1.5 -6.9 type III secretion protein HrcR compare
Psyr_1138 -1.5 -1.5 GCN5-related N-acetyltransferase compare
Psyr_3377 -1.5 -1.8 transcriptional regulator, MarR family compare
Psyr_3034 -1.5 -2.6 conserved hypothetical protein compare
Psyr_3998 -1.5 -4.2 Heat shock protein DnaJ, N-terminal compare
Psyr_4893 -1.5 -1.2 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1218 -1.5 -5.9 type III helper protein HrpK1 compare
Psyr_1556 -1.5 -2.1 hypothetical protein compare
Psyr_1395 -1.5 -4.2 virulence compare
Psyr_1716 -1.5 -3.7 conserved hypothetical protein compare
Psyr_1270 -1.5 -1.0 conserved hypothetical protein compare
Psyr_2462 -1.5 -3.2 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0268 -1.5 -1.9 DSBA oxidoreductase compare
Psyr_3662 -1.5 -2.1 NAD(P)H dehydrogenase (quinone) compare
Psyr_1216 -1.5 -5.5 type III secretion outer membrane protein PopN compare
Psyr_3287 -1.5 -1.7 DNA topoisomerase I compare
Psyr_3446 -1.4 -1.4 Surface presentation of antigens (SPOA) protein compare
Psyr_3184 -1.4 -2.7 ATP-dependent Clp protease adaptor protein ClpS compare
Psyr_3310 -1.4 -3.3 transferase hexapeptide repeat protein compare
Psyr_1903 -1.4 -2.0 conserved hypothetical protein compare
Psyr_2612 -1.4 -1.5 syrP protein, putative compare
Psyr_0724 -1.4 -0.9 conserved hypothetical protein compare
Psyr_4671 -1.4 -2.8 coenzyme PQQ synthesis protein B compare
Psyr_3554 -1.4 -1.0 Carbon storage regulator compare
Psyr_0916 -1.4 -5.0 GDP-mannose 4,6-dehydratase compare
Psyr_4018 -1.4 -3.9 Formyltetrahydrofolate deformylase compare
Psyr_0201 -1.4 -4.5 ATP-dependent DNA helicase RecG compare
Psyr_3443 -1.3 -3.7 Flagellar biosynthesis protein FliQ compare
Psyr_3954 -1.3 -3.4 GTP-binding protein LepA compare
Psyr_0579 -1.3 -5.9 RNAse R compare
Psyr_0383 -1.3 -1.1 Twin-arginine translocation protein TatB compare
Psyr_3516 -1.3 -2.5 Protein of unknown function DUF1338 compare
Psyr_5129 -1.3 -2.6 chromosome segregation DNA-binding protein compare
Psyr_2890 -1.3 -2.2 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_1718 -1.3 -2.3 von Willebrand factor, type A compare
Psyr_0830 -1.3 -3.9 Poly(A) polymerase compare
Psyr_3779 -1.3 -1.8 GCN5-related N-acetyltransferase compare
Psyr_2196 -1.3 -1.5 Urease accessory protein UreG compare
Psyr_2507 -1.3 -1.8 Endoribonuclease L-PSP compare
Psyr_2620 -1.3 -1.6 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0574 -1.3 -3.9 protease FtsH subunit HflK compare
Psyr_2259 -1.3 -1.5 Beta-lactamase-like protein compare
Psyr_3358 -1.3 -1.5 transmembrane pair compare
Psyr_1378 -1.2 -1.1 RecA protein compare
Psyr_3043 -1.2 -2.9 Paraquat-inducible protein A compare
Psyr_2056 -1.2 -2.3 CHAD compare
Psyr_0857 -1.2 -1.8 [SSU ribosomal protein S18P]-alanine acetyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in in planta experiments