Experiment set2IT095 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02035 -6.9 -4.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS03055 -5.5 -2.4 hypothetical protein compare
MMJJ_RS00235 -5.3 -21.6 hypothetical protein compare
MMJJ_RS06260 -5.2 -7.2 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS00645 -5.1 -8.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS06600 -5.0 -2.2 DUF555 domain-containing protein compare
MMJJ_RS00580 -5.0 -1.7 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06270 -4.9 -4.8 dethiobiotin synthase compare
MMJJ_RS05595 -4.8 -2.3 hypothetical protein compare
MMJJ_RS02200 -4.8 -4.7 chorismate pyruvate-lyase family protein compare
MMJJ_RS03170 -4.8 -9.2 DUF5612 domain-containing protein compare
MMJJ_RS01810 -4.8 -1.6 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS02045 -4.7 -2.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS07720 -4.7 -1.8 UPF0058 family protein compare
MMJJ_RS04800 -4.6 -5.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS00570 -4.6 -1.6 ribonuclease P compare
MMJJ_RS04565 -4.5 -3.3 sirohydrochlorin nickelochelatase compare
MMJJ_RS08625 -4.4 -3.1 magnesium/cobalt transporter CorA compare
MMJJ_RS06375 -4.4 -3.5 UbiX family flavin prenyltransferase compare
MMJJ_RS07950 -4.4 -2.3 4Fe-4S binding protein compare
MMJJ_RS06750 -4.4 -1.9 homoaconitase large subunit compare
MMJJ_RS06510 -4.3 -2.1 LL-diaminopimelate aminotransferase compare
MMJJ_RS06695 -4.2 -2.2 amidohydrolase compare
MMJJ_RS07980 -4.2 -13.7 biotin synthase BioB compare
MMJJ_RS03150 -4.2 -5.0 2-phospho-L-lactate transferase compare
MMJJ_RS00600 -4.2 -2.0 hydroxymethylbilane synthase compare
MMJJ_RS03965 -4.2 -1.4 DNA-directed RNA polymerase subunit L compare
MMJJ_RS08080 -4.2 -9.7 TIGR00300 family protein compare
MMJJ_RS04050 -4.1 -1.4 dihydroneopterin aldolase family protein compare
MMJJ_RS05155 -4.1 -6.0 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06265 -4.1 -14.8 8-amino-7-oxononanoate synthase compare
MMJJ_RS04200 -4.1 -6.1 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS00475 -4.1 -1.6 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS03270 -4.1 -1.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00370 -4.0 -1.6 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS02920 -4.0 -1.6 30S ribosomal protein S27ae compare
MMJJ_RS00450 -4.0 -1.6 DUF126 domain-containing protein compare
MMJJ_RS06155 -4.0 -5.3 phosphatidylglycerophosphatase A compare
MMJJ_RS05590 -4.0 -1.6 homoserine dehydrogenase compare
MMJJ_RS06625 -4.0 -1.6 pyruvate synthase subunit PorB compare
MMJJ_RS05065 -4.0 -3.9 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS03620 -4.0 -5.3 DUF2097 domain-containing protein compare
MMJJ_RS03895 -3.9 -2.8 hydrogenase expression/formation protein HypE compare
MMJJ_RS08870 -3.9 -1.1 2-isopropylmalate synthase compare
MMJJ_RS04685 -3.9 -8.6 carbamoyltransferase HypF compare
MMJJ_RS05650 -3.8 -2.1 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS01345 -3.8 -6.3 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS07455 -3.8 -6.3 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS03200 -3.8 -1.7 uroporphyrinogen-III synthase compare
MMJJ_RS00560 -3.7 -3.7 homoisocitrate dehydrogenase compare
MMJJ_RS08155 -3.7 -3.2 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS01350 -3.7 -6.6 sodium:proton antiporter compare
MMJJ_RS04995 -3.7 -4.9 Tfx family DNA-binding protein compare
MMJJ_RS06240 -3.7 -1.8 dihydropteroate synthase-like protein compare
MMJJ_RS01600 -3.7 -1.9 radical SAM protein compare
MMJJ_RS03800 -3.7 -12.5 aldolase compare
MMJJ_RS03005 -3.7 -2.3 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS06180 -3.7 -2.1 tryptophan--tRNA ligase compare
MMJJ_RS04155 -3.7 -5.6 hypothetical protein compare
MMJJ_RS07945 -3.7 -1.9 4Fe-4S binding protein compare
MMJJ_RS05070 -3.7 -1.6 DNA primase catalytic subunit PriS compare
MMJJ_RS06040 -3.6 -3.0 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08850 -3.6 -1.8 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS07245 -3.6 -5.5 amidohydrolase family protein compare
MMJJ_RS01870 -3.6 -1.6 methanogenesis marker 15 protein compare
MMJJ_RS00275 -3.6 -1.6 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS05770 -3.6 -2.4 flagellar protein D compare
MMJJ_RS04520 -3.6 -4.8 coenzyme F430 synthase compare
MMJJ_RS03630 -3.5 -11.6 AMP phosphorylase compare
MMJJ_RS08020 -3.5 -11.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00345 -3.5 -12.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS03190 -3.5 -2.0 phosphopyruvate hydratase compare
MMJJ_RS06225 -3.5 -1.6 adenosylmethionine decarboxylase compare
MMJJ_RS01755 -3.5 -1.8 ferrous iron transport protein B compare
MMJJ_RS04730 -3.5 -2.4 tyrosine decarboxylase MfnA compare
MMJJ_RS00425 -3.5 -3.0 hypothetical protein compare
MMJJ_RS04475 -3.5 -4.3 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS05415 -3.5 -1.5 hypothetical protein compare
MMJJ_RS04145 -3.4 -8.0 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS03785 -3.4 -1.8 hypothetical protein compare
MMJJ_RS05535 -3.4 -12.3 hypothetical protein compare
MMJJ_RS03125 -3.4 -3.5 GMC oxidoreductase compare
MMJJ_RS03840 -3.4 -2.3 DHH family phosphoesterase compare
MMJJ_RS05610 -3.3 -3.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS00125 -3.3 -1.8 KEOPS complex subunit Cgi121 compare
MMJJ_RS06490 -3.3 -1.7 methanogenesis marker 2 protein compare
MMJJ_RS02985 -3.3 -11.7 MBL fold metallo-hydrolase compare
MMJJ_RS08925 -3.3 -10.8 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS03230 -3.3 -3.8 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS00355 -3.3 -2.4 ribonuclease P protein component 4 compare
MMJJ_RS01935 -3.3 -3.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS07170 -3.3 -2.3 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS03310 -3.3 -2.8 hypothetical protein compare
MMJJ_RS03865 -3.3 -1.1 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS08660 -3.3 -2.7 acetylornithine transaminase compare
MMJJ_RS06875 -3.3 -1.4 hypothetical protein compare
MMJJ_RS09190 -3.3 -1.5 tryptophan synthase subunit beta compare
MMJJ_RS06390 -3.3 -1.3 NADPH-dependent F420 reductase compare
MMJJ_RS06715 -3.2 -10.9 lactaldehyde dehydrogenase compare
MMJJ_RS05620 -3.2 -3.1 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS01880 -3.2 -2.6 RlmE family RNA methyltransferase compare
MMJJ_RS08795 -3.2 -1.7 phosphoglucosamine mutase compare
MMJJ_RS04485 -3.2 -10.0 riboflavin synthase compare
MMJJ_RS00205 -3.2 -5.1 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS07410 -3.2 -3.1 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS05810 -3.2 -4.8 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00270 -3.2 -2.4 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS02090 -3.2 -5.0 tyramine--L-glutamate ligase compare
MMJJ_RS03580 -3.2 -2.4 TIGR00303 family protein compare
MMJJ_RS07430 -3.1 -2.7 ribonuclease VapC compare
MMJJ_RS03065 -3.1 -11.9 CBS domain-containing protein compare
MMJJ_RS07470 -3.1 -1.7 50S ribosome-binding GTPase compare
MMJJ_RS05490 -3.1 -1.7 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS07415 -3.1 -2.0 polyprenyl diphosphate synthase compare
MMJJ_RS08535 -3.1 -2.9 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS07155 -3.1 -10.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS01750 -3.1 -2.4 ferrous iron transport protein A compare
MMJJ_RS07705 -3.1 -1.8 GTP-binding protein EngB compare
MMJJ_RS08095 -3.1 -3.6 cobyric acid synthase CobQ compare
MMJJ_RS03615 -3.1 -2.2 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06250 -3.1 -1.6 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS08010 -3.1 -8.2 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06840 -3.0 -2.8 nickel-dependent hydrogenase large subunit compare
MMJJ_RS01690 -3.0 -2.9 methanogenesis marker 12 protein compare
MMJJ_RS05575 -3.0 -3.6 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08320 -3.0 -1.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS05445 -3.0 -1.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06010 -3.0 -5.3 hypothetical protein compare
MMJJ_RS07350 -3.0 -2.9 4Fe-4S binding protein compare
MMJJ_RS05765 -2.9 -0.8 flagellar protein E compare
MMJJ_RS03245 -2.9 -1.4 UMP kinase compare
MMJJ_RS03060 -2.9 -2.5 methanogenesis marker 7 protein compare
MMJJ_RS08055 -2.9 -7.3 methanogenesis marker 14 protein compare
MMJJ_RS05950 -2.9 -2.7 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07015 -2.9 -1.6 PFL family protein compare
MMJJ_RS06220 -2.9 -4.7 polyamine aminopropyltransferase compare
MMJJ_RS01415 -2.9 -1.9 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS02275 -2.9 -3.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS04980 -2.9 -4.8 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS03760 -2.9 -2.7 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS04975 -2.8 -1.7 glycosyltransferase family 4 protein compare
MMJJ_RS04675 -2.8 -6.5 thiamine pyrophosphate-binding protein compare
MMJJ_RS09175 -2.8 -0.8 anthranilate synthase component I compare
MMJJ_RS04150 -2.8 -2.7 DUF5379 domain-containing protein compare
MMJJ_RS06175 -2.8 -1.7 DUF1743 domain-containing protein compare
MMJJ_RS04650 -2.8 -5.3 nitrogenase iron protein compare
MMJJ_RS08035 -2.8 -7.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS04700 -2.8 -6.8 deoxyhypusine synthase compare
MMJJ_RS06860 -2.8 -3.1 hypothetical protein compare
MMJJ_RS06760 -2.8 -3.8 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS05655 -2.8 -6.4 HisA/HisF family protein compare
MMJJ_RS08230 -2.8 -2.7 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS05720 -2.8 -2.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS03650 -2.8 -7.6 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS03110 -2.7 -3.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06805 -2.7 -2.2 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS08905 -2.7 -12.5 YcaO-related McrA-glycine thioamidation protein compare
MMJJ_RS06700 -2.7 -5.3 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS03815 -2.7 -1.8 nascent polypeptide-associated complex protein compare
MMJJ_RS03670 -2.7 -4.3 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03820 -2.7 -2.6 hydrogenase formation protein HypD compare
MMJJ_RS07160 -2.7 -15.7 M20 family metallo-hydrolase compare
MMJJ_RS06215 -2.7 -4.4 agmatinase compare
MMJJ_RS00215 -2.7 -1.8 CCA tRNA nucleotidyltransferase compare
MMJJ_RS05330 -2.7 -1.4 DNA polymerase II large subunit compare
MMJJ_RS06255 -2.7 -6.5 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03490 -2.6 -2.1 ribonuclease VapC compare
MMJJ_RS05450 -2.6 -13.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS07345 -2.6 -7.8 homocysteine biosynthesis protein compare
MMJJ_RS03765 -2.6 -8.7 hypothetical protein compare
MMJJ_RS07190 -2.5 -3.4 RtcB family protein compare
MMJJ_RS06485 -2.5 -2.3 phosphoglycerate kinase compare
MMJJ_RS07000 -2.5 -1.4 TrkH family potassium uptake protein compare
MMJJ_RS07785 -2.5 -1.3 fumarate reductase subunit A compare
MMJJ_RS08340 -2.5 -5.5 archaeoflavoprotein AfpA compare
MMJJ_RS06110 -2.5 -1.2 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS00210 -2.5 -1.5 DUF530 family protein compare
MMJJ_RS06035 -2.5 -8.1 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS05710 -2.5 -4.1 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS08840 -2.5 -3.7 calcium/sodium antiporter compare
MMJJ_RS01410 -2.5 -6.3 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS06400 -2.5 -4.3 FumA C-terminus/TtdB family hydratase beta subunit compare
MMJJ_RS08405 -2.4 -11.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03095 -2.4 -2.0 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS09135 -2.4 -7.5 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS04755 -2.4 -10.7 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS05295 -2.4 -11.3 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS08000 -2.4 -8.8 HesA/MoeB/ThiF family protein compare
MMJJ_RS01875 -2.4 -5.8 global nitrogen regulator NrpR compare
MMJJ_RS05260 -2.4 -4.7 ATP-grasp domain-containing protein compare
MMJJ_RS04760 -2.3 -14.9 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS08620 -2.3 -3.6 DUF373 family protein compare
MMJJ_RS06705 -2.3 -3.4 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS02040 -2.3 -1.8 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06015 -2.3 -7.2 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS04655 -2.3 -5.2 FAD-dependent oxidoreductase compare
MMJJ_RS05995 -2.3 -1.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS07370 -2.3 -3.8 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS07955 -2.2 -9.1 ThiF family adenylyltransferase compare
MMJJ_RS06170 -2.2 -7.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms