Experiment set2IT095 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04480 +1.1 2.1 hypothetical protein compare
MMJJ_RS08025 +1.0 3.9 hypothetical protein compare
MMJJ_RS05870 +0.9 2.6 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMJJ_RS01210 +0.9 1.6 hypothetical protein compare
MMJJ_RS04720 +0.9 0.9 IMP dehydrogenase compare
MMJJ_RS09265 +0.8 2.2 hypothetical protein compare
MMJJ_RS08040 +0.8 4.9 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS04870 +0.8 1.5 tRNA-Asp compare
MMJJ_RS06275 +0.8 3.4 hypothetical protein compare
MMJJ_RS08730 +0.8 5.3 glycosyltransferase family 4 protein compare
MMJJ_RS04215 +0.8 5.7 DMT family transporter compare
MMJJ_RS03205 +0.8 4.5 metallophosphoesterase compare
MMJJ_RS06755 +0.8 5.1 diadenylate cyclase compare
MMJJ_RS01125 +0.7 2.1 hypothetical protein compare
MMJJ_RS06430 +0.7 3.9 haloacid dehalogenase compare
MMJJ_RS00525 +0.7 1.4 Dabb family protein compare
MMJJ_RS09380 +0.7 1.9 hypothetical protein compare
MMJJ_RS09390 +0.7 1.0 hypothetical protein compare
MMJJ_RS06210 +0.7 3.3 hypothetical protein compare
MMJJ_RS07610 +0.7 2.8 DUF2119 domain-containing protein compare
MMJJ_RS06800 +0.6 2.5 prefoldin subunit alpha compare
MMJJ_RS01110 +0.6 1.9 hypothetical protein compare
MMJJ_RS07825 +0.6 2.7 YciI family protein compare
MMJJ_RS09325 +0.6 2.4 hypothetical protein compare
MMJJ_RS06105 +0.6 3.6 DUF99 family protein compare
MMJJ_RS06950 +0.6 3.3 4-demethylwyosine synthase TYW1 compare
MMJJ_RS07490 +0.6 1.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMJJ_RS06495 +0.6 1.5 hypothetical protein compare
MMJJ_RS04935 +0.6 2.1 4Fe-4S binding protein compare
MMJJ_RS04180 +0.6 1.1 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS04055 +0.6 2.1 hypothetical protein compare
MMJJ_RS01405 +0.6 0.5 proline--tRNA ligase compare
MMJJ_RS08370 +0.6 2.0 hypothetical protein compare
MMJJ_RS04875 +0.6 0.6 tRNA-Lys compare
MMJJ_RS08705 +0.6 2.9 AEC family transporter compare
MMJJ_RS05035 +0.6 2.4 4Fe-4S binding protein compare
MMJJ_RS06130 +0.6 1.7 hypothetical protein compare
MMJJ_RS04210 +0.6 2.3 DUF434 domain-containing protein compare
MMJJ_RS05505 +0.5 4.8 hypothetical protein compare
MMJJ_RS03370 +0.5 1.5 hypothetical protein compare
MMJJ_RS05400 +0.5 1.8 CoA-binding protein compare
MMJJ_RS08365 +0.5 1.8 DsrE family protein compare
MMJJ_RS09050 +0.5 1.7 hypothetical protein compare
MMJJ_RS05510 +0.5 2.4 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS04525 +0.5 2.2 hypothetical protein compare
MMJJ_RS00170 +0.5 2.3 thioredoxin family protein compare
MMJJ_RS06135 +0.5 2.8 50S ribosomal protein L11 methyltransferase compare
MMJJ_RS04270 +0.5 1.9 DUF364 domain-containing protein compare
MMJJ_RS04245 +0.5 2.3 flavoprotein compare
MMJJ_RS00480 +0.5 2.7 flippase compare
MMJJ_RS00420 +0.5 2.1 CBS domain-containing protein conserved
MMJJ_RS06465 +0.5 2.5 hypothetical protein compare
MMJJ_RS06720 +0.5 2.5 mechanosensitive ion channel family protein compare
MMJJ_RS07635 +0.5 2.0 response regulator transcription factor compare
MMJJ_RS07905 +0.5 2.4 DUF89 domain-containing protein compare
MMJJ_RS06445 +0.5 3.5 hypothetical protein compare
MMJJ_RS07040 +0.5 0.4 preprotein translocase subunit SecY compare
MMJJ_RS05135 +0.4 0.5 50S ribosomal protein L18Ae compare
MMJJ_RS08380 +0.4 1.2 hypothetical protein compare
MMJJ_RS06205 +0.4 2.1 EamA family transporter compare
MMJJ_RS09010 +0.4 1.5 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMJJ_RS07780 +0.4 2.4 DUF190 domain-containing protein compare
MMJJ_RS08630 +0.4 1.7 signal recognition particle subunit SRP19/SEC65 family protein compare
MMJJ_RS06575 +0.4 0.5 prephenate dehydrogenase compare
MMJJ_RS03135 +0.4 1.3 CBS domain-containing protein compare
MMJJ_RS05925 +0.4 2.0 DUF2099 family protein compare
MMJJ_RS06080 +0.4 2.6 serine/threonine protein kinase compare
MMJJ_RS06975 +0.4 1.0 protein translocase SEC61 complex subunit gamma compare
MMJJ_RS08295 +0.4 2.9 iron ABC transporter substrate-binding protein compare
MMJJ_RS02000 +0.4 1.5 AzlD domain-containing protein compare
MMJJ_RS08760 +0.4 2.5 glycosyltransferase family 9 protein compare
MMJJ_RS01010 +0.4 3.7 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS05980 +0.4 1.8 DUF5400 domain-containing protein compare
MMJJ_RS06765 +0.4 3.1 hypothetical protein compare
MMJJ_RS02860 +0.4 0.9 site-specific integrase compare
MMJJ_RS00870 +0.4 1.6 F420-nonreducing hydrogenase compare
MMJJ_RS06770 +0.4 2.7 hypothetical protein compare
MMJJ_RS05915 +0.4 0.8 multiprotein bridging factor aMBF1 compare
MMJJ_RS08360 +0.4 2.7 FprA family A-type flavoprotein compare
MMJJ_RS06580 +0.4 2.5 alanine dehydrogenase compare
MMJJ_RS07640 +0.4 3.0 cache domain-containing protein compare
MMJJ_RS07645 +0.4 1.8 selenium-binding protein compare
MMJJ_RS09155 +0.4 2.6 RluA family pseudouridine synthase compare
MMJJ_RS04415 +0.4 1.1 hypothetical protein compare
MMJJ_RS01650 +0.4 3.3 acetolactate synthase large subunit compare
MMJJ_RS01615 +0.4 1.1 MoaD/ThiS family protein compare
MMJJ_RS06710 +0.4 2.4 TldD/PmbA family protein compare
MMJJ_RS07235 +0.4 2.7 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS00540 +0.4 1.5 hypothetical protein compare
MMJJ_RS01060 +0.4 1.2 ABC transporter ATP-binding protein compare
MMJJ_RS00300 +0.4 1.9 chemotaxis protein CheC compare
MMJJ_RS07500 +0.4 2.3 hypothetical protein compare
MMJJ_RS05890 +0.4 2.4 molybdate ABC transporter substrate-binding protein compare
MMJJ_RS06450 +0.4 2.0 DUF3343 domain-containing protein compare
MMJJ_RS01265 +0.4 1.3 cupin domain-containing protein compare
MMJJ_RS03360 +0.4 0.4 hypothetical protein compare
MMJJ_RS06630 +0.4 2.2 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS07255 +0.4 2.8 hypothetical protein compare
MMJJ_RS07420 +0.4 1.7 protease complex subunit PrcB family protein compare
MMJJ_RS06295 +0.4 1.7 DUF2096 family protein compare
MMJJ_RS03690 +0.3 1.4 indolepyruvate oxidoreductase subunit beta compare
MMJJ_RS07620 +0.3 2.1 class I SAM-dependent rRNA methyltransferase compare
MMJJ_RS02885 +0.3 1.2 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMJJ_RS03545 +0.3 1.9 flagella protein F compare
MMJJ_RS07830 +0.3 2.0 DUF1786 domain-containing protein compare
MMJJ_RS08450 +0.3 2.1 undecaprenyl-diphosphate phosphatase compare
MMJJ_RS09405 +0.3 0.9 hypothetical protein compare
MMJJ_RS03185 +0.3 0.4 alanine--tRNA ligase compare
MMJJ_RS06480 +0.3 2.1 hypothetical protein compare
MMJJ_RS08385 +0.3 1.3 class II SORL domain-containing protein compare
MMJJ_RS01680 +0.3 1.6 cation diffusion facilitator family transporter compare
MMJJ_RS07855 +0.3 2.0 YkgJ family cysteine cluster protein compare
MMJJ_RS05760 +0.3 2.2 flagellar protein F compare
MMJJ_RS04780 +0.3 0.9 nucleic acid-binding protein compare
MMJJ_RS07690 +0.3 1.6 glycosyltransferase family 4 protein compare
MMJJ_RS04785 +0.3 1.4 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS08065 +0.3 0.4 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS07970 +0.3 0.4 O-phospho-L-seryl-tRNA:Cys-tRNA synthase compare
MMJJ_RS02665 +0.3 0.6 methyl-accepting chemotaxis protein compare
MMJJ_RS06055 +0.3 1.6 S-methyl-5-thioribose-1-phosphate isomerase compare
MMJJ_RS03485 +0.3 2.0 radical SAM protein compare
MMJJ_RS07210 +0.3 1.8 AmmeMemoRadiSam system protein B compare
MMJJ_RS05605 +0.3 1.3 hypothetical protein compare
MMJJ_RS02915 +0.3 1.5 hypothetical protein compare
MMJJ_RS09070 +0.3 1.3 hypothetical protein compare
MMJJ_RS03460 +0.3 1.6 hypothetical protein compare
MMJJ_RS05335 +0.3 0.9 heavy metal-binding domain-containing protein compare
MMJJ_RS04585 +0.3 1.4 phenylacetate--CoA ligase compare
MMJJ_RS04440 +0.3 1.0 hypothetical protein compare
MMJJ_RS03510 +0.3 1.6 acyl-CoA dehydratase activase compare
MMJJ_RS01380 +0.3 1.3 DUF1890 domain-containing protein compare
MMJJ_RS01665 +0.3 1.5 archease compare
MMJJ_RS03850 +0.3 1.0 nucleoside-diphosphate kinase compare
MMJJ_RS01760 +0.3 1.3 N-acetyltransferase compare
MMJJ_RS09215 +0.3 1.9 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS01250 +0.3 1.1 hypothetical protein compare
MMJJ_RS03330 +0.3 1.8 hypothetical protein compare
MMJJ_RS05730 +0.3 1.7 TIM barrel protein compare
MMJJ_RS06160 +0.3 1.7 stage II sporulation protein M compare
MMJJ_RS07790 +0.3 1.7 hypothetical protein compare
MMJJ_RS04620 +0.3 0.2 homocitrate synthase family protein compare
MMJJ_RS04845 +0.3 1.8 ABC transporter substrate-binding protein compare
MMJJ_RS05985 +0.3 1.3 ABC transporter substrate-binding protein compare
MMJJ_RS06045 +0.3 1.3 hypothetical protein compare
MMJJ_RS04560 +0.3 1.5 ABC transporter permease compare
MMJJ_RS04405 +0.3 1.2 hypothetical protein compare
MMJJ_RS03530 +0.3 1.7 phosphate ABC transporter substrate-binding protein compare
MMJJ_RS07650 +0.3 1.8 formate/nitrite transporter family protein compare
MMJJ_RS05740 +0.3 1.8 archaellar assembly protein FlaJ compare
MMJJ_RS05240 +0.3 2.1 type II secretion system F family protein compare
MMJJ_RS07820 +0.3 1.8 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMJJ_RS07225 +0.3 1.3 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS04090 +0.3 1.8 hypothetical protein compare
MMJJ_RS06470 +0.3 1.3 tripartite tricarboxylate transporter permease compare
MMJJ_RS07035 +0.3 0.3 glycosyl transferase compare
MMJJ_RS03285 +0.3 0.9 gamma-glutamylcyclotransferase compare
MMJJ_RS07915 +0.3 1.2 CBS domain-containing protein compare
MMJJ_RS07590 +0.3 1.5 flap endonuclease-1 compare
MMJJ_RS06440 +0.3 1.2 DUF4870 domain-containing protein compare
MMJJ_RS00290 +0.3 1.4 CheF family chemotaxis protein compare
MMJJ_RS02185 +0.3 1.3 TIGR00296 family protein compare
MMJJ_RS03725 +0.3 0.6 sulfurtransferase TusA family protein compare
MMJJ_RS08550 +0.3 1.7 B12-binding domain-containing radical SAM protein compare
MMJJ_RS06810 +0.3 1.6 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS07815 +0.2 1.5 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS05700 +0.2 1.2 metallophosphoesterase compare
MMJJ_RS03940 +0.2 1.3 DMT family transporter compare
MMJJ_RS01275 +0.2 1.0 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS06280 +0.2 1.4 hypothetical protein compare
MMJJ_RS04220 +0.2 1.4 helix-turn-helix transcriptional regulator compare
MMJJ_RS06680 +0.2 1.1 DUF366 family protein compare
MMJJ_RS06190 +0.2 1.5 7-cyano-7-deazaguanine synthase compare
MMJJ_RS06455 +0.2 1.4 YeeE/YedE family protein compare
MMJJ_RS04925 +0.2 1.5 cation:proton antiporter compare
MMJJ_RS05355 +0.2 1.3 DUF2121 domain-containing protein compare
MMJJ_RS03475 +0.2 1.6 tyrosine-type recombinase/integrase compare
MMJJ_RS05745 +0.2 1.6 type II/IV secretion system ATPase subunit compare
MMJJ_RS04165 +0.2 1.5 sodium:solute symporter compare
MMJJ_RS01515 +0.2 0.7 DUF2178 domain-containing protein compare
MMJJ_RS05790 +0.2 1.1 flagellin compare
MMJJ_RS08570 +0.2 1.3 multidrug resistance efflux transporter family protein compare
MMJJ_RS08750 +0.2 1.6 glycosyltransferase compare
MMJJ_RS05525 +0.2 1.1 GTP-binding protein compare
MMJJ_RS07920 +0.2 1.4 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS05115 +0.2 0.5 P-II family nitrogen regulator compare
MMJJ_RS03440 +0.2 1.3 hypothetical protein compare
MMJJ_RS05695 +0.2 0.9 class III signal peptide-containing protein compare
MMJJ_RS08280 +0.2 1.5 radical SAM protein compare
MMJJ_RS08045 +0.2 1.5 transporter substrate-binding domain-containing protein compare
MMJJ_RS00785 +0.2 0.5 hypothetical protein compare
MMJJ_RS01420 +0.2 1.3 hypothetical protein compare
MMJJ_RS00725 +0.2 1.1 LysE family translocator compare
MMJJ_RS03045 +0.2 1.0 hypothetical protein compare
MMJJ_RS03465 +0.2 1.4 restriction endonuclease compare
MMJJ_RS01675 +0.2 1.8 malate dehydrogenase compare
MMJJ_RS01640 +0.2 1.5 zinc ribbon domain-containing protein compare
MMJJ_RS07810 +0.2 1.0 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS06120 +0.2 1.0 DUF4013 domain-containing protein compare
MMJJ_RS05030 +0.2 1.3 orotate phosphoribosyltransferase-like protein compare
MMJJ_RS02340 +0.2 0.9 SAM-dependent methyltransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms