Experiment set2IT094 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Asparagine carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO356_12715 +2.1 10.2 hypothetical protein compare
AO356_03780 +1.9 5.7 flagellar motor switch protein compare
AO356_11055 +1.7 10.0 long-chain acyl-CoA thioester hydrolase compare
AO356_03830 +1.6 10.7 flagellar motor switch protein FliG compare
AO356_05885 +1.5 13.0 RNA polymerase sigma factor RpoS compare
AO356_03835 +1.5 12.7 flagellar M-ring protein FliF compare
AO356_03760 +1.5 8.8 flagellar biosynthetic protein FliR compare
AO356_03765 +1.5 11.3 flagellar biosynthetic protein FliQ compare
AO356_15735 +1.5 12.4 ABC transporter ATP-binding protein compare
AO356_03825 +1.4 7.2 flagellar assembly protein FliH compare
AO356_12710 +1.4 4.2 hypothetical protein compare
AO356_03820 +1.4 12.6 flagellar protein export ATPase FliI compare
AO356_03730 +1.4 11.8 flagellar biosynthesis sigma factor compare
AO356_03785 +1.4 11.3 flagellar motor switch protein FliM compare
AO356_03745 +1.4 12.2 flagellar biosynthesis protein FlhA compare
AO356_03815 +1.4 10.4 flagellar biogenesis protein compare
AO356_10075 +1.3 8.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_03840 +1.3 9.5 flagellar hook-basal body protein FliE compare
AO356_03770 +1.3 6.1 flagellar biosynthesis protein flip compare
AO356_18900 +1.3 8.1 flagellar biosynthesis protein FlgA compare
AO356_03775 +1.3 3.5 flagellar assembly protein FliO compare
AO356_03755 +1.3 9.7 flagellar biosynthetic protein FlhB compare
AO356_03910 +1.1 7.9 flagellar biosynthesis protein FlgJ compare
AO356_18930 +1.1 9.8 flagellar biosynthesis protein FlgE compare
AO356_03915 +1.1 6.2 flagellar biosynthesis protein FlgI compare
AO356_21430 +1.1 7.7 peptidoglycan-binding protein compare
AO356_18920 +1.0 8.5 flagellar basal-body rod protein FlgC compare
AO356_00130 +1.0 5.0 XRE family transcriptional regulator compare
AO356_15440 +1.0 9.1 histidine kinase compare
AO356_18155 +1.0 2.5 cold-shock protein compare
AO356_03920 +0.9 6.6 flagellar basal body L-ring protein compare
AO356_19780 +0.9 7.6 histidine kinase compare
AO356_20090 +0.9 2.6 protein tyrosine phosphatase compare
AO356_18915 +0.9 6.3 flagellar biosynthesis protein FlgB compare
AO356_22405 +0.9 1.6 hypothetical protein compare
AO356_26395 +0.9 1.1 hypothetical protein compare
AO356_12515 +0.8 3.5 exodeoxyribonuclease III compare
AO356_16095 +0.8 5.6 molecular chaperone DnaK compare
AO356_03880 +0.8 6.0 flagellin compare
AO356_03680 +0.8 7.4 chemotaxis protein compare
AO356_27280 +0.8 1.8 XRE family transcriptional regulator compare
AO356_23215 +0.8 5.2 conjugal transfer protein TraR compare
AO356_03925 +0.8 5.1 flagellar basal-body rod protein FlgG compare
AO356_03790 +0.8 4.5 flagellar basal body protein FliL compare
AO356_14335 +0.8 3.7 rRNA methyltransferase compare
AO356_19240 +0.8 1.7 cupin compare
AO356_02905 +0.8 5.7 amino acid ABC transporter substrate-binding protein compare
AO356_24565 +0.8 3.0 hypothetical protein compare
AO356_01515 +0.8 3.5 N-formylglutamate amidohydrolase compare
AO356_09940 +0.8 1.7 hypothetical protein compare
AO356_03795 +0.8 5.7 flagellar hook-length control protein compare
AO356_28440 +0.7 1.5 galactose 1-dehydrogenase compare
AO356_08705 +0.7 5.2 flagellar motor protein MotB compare
AO356_12900 +0.7 2.9 exopolyphosphatase compare
AO356_10080 +0.7 4.0 ADP-ribose diphosphatase compare
AO356_03855 +0.7 5.0 AAA family ATPase compare
AO356_10145 +0.7 1.8 molecular chaperone Hsp33 compare
AO356_13740 +0.7 5.1 acyltransferase compare
AO356_00875 +0.7 3.2 MerR family transcriptional regulator compare
AO356_03740 +0.7 2.4 flagellar biosynthesis protein FlhF compare
AO356_23075 +0.7 1.6 hypothetical protein compare
AO356_21320 +0.7 1.3 tRNA-Asn compare
AO356_06760 +0.7 2.2 transcriptional antiterminator compare
AO356_19790 +0.6 6.0 TonB-dependent receptor compare
AO356_01500 +0.6 3.3 RpiR family transcriptional regulator compare
AO356_05600 +0.6 4.2 ribosomal protein S12 methylthiotransferase RimO compare
AO356_24725 +0.6 2.2 alkylhydroperoxidase compare
AO356_07385 +0.6 1.2 tRNA-Thr compare
AO356_18925 +0.6 4.2 flagellar biosynthesis protein FlgD compare
AO356_18890 +0.6 2.5 flagellar biosynthesis protein FlgN compare
AO356_06900 +0.6 5.4 hypothetical protein compare
AO356_27150 +0.6 1.8 threonine synthase compare
AO356_21085 +0.6 3.3 cupin compare
AO356_29795 +0.6 1.7 amino acid transporter compare
AO356_04335 +0.6 4.3 hypothetical protein compare
AO356_06905 +0.6 5.5 adhesin compare
AO356_26485 +0.6 0.9 hypothetical protein compare
AO356_24305 +0.6 1.8 hypothetical protein compare
AO356_23640 +0.6 1.6 hydrolase TatD compare
AO356_19520 +0.6 2.1 isochorismatase compare
AO356_24335 +0.6 1.0 type VI secretion protein compare
AO356_27285 +0.6 1.7 hypothetical protein compare
AO356_02360 +0.6 1.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO356_28290 +0.6 2.0 LuxR family transcriptional regulator compare
AO356_29490 +0.6 1.5 ArsR family transcriptional regulator compare
AO356_18435 +0.6 1.9 hypothetical protein compare
AO356_20585 +0.6 2.9 hypothetical protein compare
AO356_06310 +0.6 2.1 spermidine/putrescine ABC transporter permease compare
AO356_03905 +0.6 3.7 flagellar biosynthesis protein FlgK compare
AO356_05735 +0.6 1.0 hypothetical protein compare
AO356_18810 +0.6 2.8 DNA-binding protein compare
AO356_26210 +0.5 1.2 histidine kinase compare
AO356_03845 +0.5 3.5 Fis family transcriptional regulator compare
AO356_21660 +0.5 1.7 NAD-dependent deacetylase compare
AO356_28330 +0.5 1.9 secretion protein HlyD compare
AO356_03065 +0.5 2.4 AAA family ATPase compare
AO356_01510 +0.5 3.2 glutamine synthetase compare
AO356_25310 +0.5 1.7 hypothetical protein compare
AO356_04325 +0.5 2.7 allophanate hydrolase compare
AO356_27870 +0.5 2.6 ATPase compare
AO356_03240 +0.5 2.3 transcription elongation factor GreB compare
AO356_06735 +0.5 1.9 hypothetical protein compare
AO356_22580 +0.5 2.6 cytochrome C compare
AO356_19315 +0.5 1.6 hypothetical protein compare
AO356_19745 +0.5 3.8 heat-shock protein Hsp90 compare
AO356_09015 +0.5 4.3 transcriptional regulator compare
AO356_22955 +0.5 1.7 ArsR family transcriptional regulator compare
AO356_07390 +0.5 1.2 polyribonucleotide nucleotidyltransferase compare
AO356_28520 +0.5 1.7 multidrug MFS transporter compare
AO356_26980 +0.5 2.3 amino acid transporter compare
AO356_03930 +0.5 2.4 flagellar biosynthesis protein FlgF compare
AO356_20630 +0.5 1.4 Presumed portal vertex protein compare
AO356_20220 +0.5 3.7 hypothetical protein compare
AO356_01275 +0.5 2.9 GntR family transcriptional regulator compare
AO356_09185 +0.5 1.0 hypothetical protein compare
AO356_09755 +0.5 2.9 preprotein translocase subunit SecB compare
AO356_21215 +0.5 2.3 RNA polymerase subunit sigma-24 compare
AO356_19145 +0.5 1.5 5,6-dimethylbenzimidazole synthase compare
AO356_29130 +0.5 2.0 MFS transporter compare
AO356_12235 +0.5 1.8 hypothetical protein compare
AO356_12025 +0.5 4.0 pyruvate carboxylase subunit B compare
AO356_01885 +0.5 1.7 hypothetical protein compare
AO356_00920 +0.5 1.4 cold-shock protein compare
AO356_08975 +0.5 4.0 diguanylate cyclase compare
AO356_24125 +0.5 2.1 hypothetical protein compare
AO356_21115 +0.5 1.7 alpha/beta hydrolase compare
AO356_26730 +0.5 1.7 cupin compare
AO356_12545 +0.5 1.9 hypothetical protein compare
AO356_02945 +0.5 1.7 molybdenum cofactor sulfurase compare
AO356_18710 +0.5 3.8 L-Arginine ABC transporter, permease component 1 (from data) compare
AO356_26040 +0.5 1.0 hypothetical protein compare
AO356_13275 +0.5 1.2 multidrug transporter compare
AO356_30020 +0.5 1.2 hypothetical protein compare
AO356_19600 +0.5 2.5 pyruvate kinase compare
AO356_24550 +0.5 0.9 hypothetical protein compare
AO356_06440 +0.4 2.2 hypothetical protein compare
AO356_18705 +0.4 2.8 L-Arginine ABC transporter, permease component 2 (from data) compare
AO356_22815 +0.4 1.6 lactoylglutathione lyase compare
AO356_26355 +0.4 2.1 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
AO356_03665 +0.4 1.0 flagellar hook-length control protein FliK compare
AO356_18340 +0.4 2.5 leucyl-tRNA synthetase compare
AO356_21245 +0.4 1.9 cytosine deaminase compare
AO356_29400 +0.4 1.7 peptidase M20 compare
AO356_15465 +0.4 2.4 AsnC family transcriptional regulator compare
AO356_13145 +0.4 3.3 glutamine synthetase compare
AO356_26400 +0.4 2.2 LysR family transcriptional regulator compare
AO356_08710 +0.4 3.6 flagellar motor stator protein MotA compare
AO356_14825 +0.4 1.2 AraC family transcriptional regulator compare
AO356_15980 +0.4 1.2 hypothetical protein compare
AO356_08385 +0.4 1.3 urease subunit beta compare
AO356_17255 +0.4 1.7 multidrug transporter compare
AO356_12925 +0.4 1.0 GntR family transcriptional regulator compare
AO356_15690 +0.4 0.9 carbon starvation protein A compare
AO356_16185 +0.4 2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_25225 +0.4 0.9 peptidylprolyl isomerase compare
AO356_26330 +0.4 1.1 Lipid A biosynthesis, N-terminal compare
AO356_18160 +0.4 1.8 glycine cleavage system protein T compare
AO356_19610 +0.4 1.7 2-hydroxy-3-oxopropionate reductase compare
AO356_25600 +0.4 1.7 AraC family transcriptional regulator compare
AO356_19730 +0.4 0.9 hypothetical protein compare
AO356_20550 +0.4 1.6 phage tail protein compare
AO356_24965 +0.4 1.2 GntR family transcriptional regulator compare
AO356_05385 +0.4 3.3 cysteine synthase compare
AO356_18700 +0.4 3.1 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare
AO356_27830 +0.4 1.2 hypothetical protein compare
AO356_08315 +0.4 1.1 hypothetical protein compare
AO356_18590 +0.4 1.2 hypothetical protein compare
AO356_28905 +0.4 1.6 HxlR family transcriptional regulator compare
AO356_09615 +0.4 1.6 ABC transporter for L-Histidine, permease component (from data) compare
AO356_00125 +0.4 1.1 hypothetical protein compare
AO356_23585 +0.4 1.4 hypothetical protein compare
AO356_27350 +0.4 1.9 globin compare
AO356_24570 +0.4 3.1 RND transporter compare
AO356_08215 +0.4 2.5 tRNA-dihydrouridine synthase B compare
AO356_24705 +0.4 3.1 NAD-glutamate dehydrogenase compare
AO356_28020 +0.4 1.8 ethanol oxidation regulatory protein ercA (from data) compare
AO356_17370 +0.4 3.2 ATP-dependent RNA helicase RhlB compare
AO356_00825 +0.4 1.5 hypothetical protein compare
AO356_23325 +0.4 1.2 short-chain dehydrogenase compare
AO356_26970 +0.4 1.6 sodium:proton antiporter compare
AO356_00385 +0.4 0.7 peptidylprolyl isomerase compare
AO356_17960 +0.4 1.4 nucleotide-binding protein compare
AO356_11160 +0.4 3.0 cytochrome B559 subunit alpha compare
AO356_03270 +0.4 1.1 terminase compare
AO356_05010 +0.4 3.1 diguanylate cyclase compare
AO356_08610 +0.4 2.3 exoribonuclease R compare
AO356_13590 +0.4 2.9 DEAD/DEAH box helicase compare
AO356_11980 +0.4 2.7 cell wall assembly protein compare
AO356_11410 +0.4 1.1 hypothetical protein compare
AO356_00285 +0.4 1.7 hypothetical protein compare
AO356_22595 +0.4 2.1 regulation of enolase 1 compare
AO356_09460 +0.4 1.7 ATP-dependent protease ATP-binding subunit HslU compare
AO356_06445 +0.4 1.3 tRNA (cmo5U34)-methyltransferase compare
AO356_21855 +0.4 2.2 glycine/betaine ABC transporter substrate-binding protein compare
AO356_05040 +0.4 2.7 transcriptional regulator compare
AO356_13515 +0.4 1.3 triphosphoribosyl-dephospho-CoA synthase MdcB compare
AO356_28065 +0.4 2.1 LuxR family transcriptional regulator compare
AO356_23020 +0.4 1.9 hypothetical protein compare
AO356_09995 +0.4 2.5 LysR family transcriptional regulator compare
AO356_13065 +0.4 2.1 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Asparagine in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Asparagine across organisms