Experiment set2IT094 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Tetracycline hydrochloride 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
Ga0059261_0171 -2.0 -1.9 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_0197 -2.0 -1.7 hypothetical protein compare
Ga0059261_2471 -1.9 -2.1 hypothetical protein compare
Ga0059261_2490 -1.9 -6.3 Small protein A (tmRNA-binding) compare
Ga0059261_3519 -1.9 -13.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Ga0059261_0246 -1.7 -2.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
Ga0059261_3518 -1.7 -10.8 RND family efflux transporter, MFP subunit compare
Ga0059261_0083 -1.6 -1.6 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-) compare
Ga0059261_1382 -1.6 -7.1 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_4188 -1.6 -6.6 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_3159 -1.5 -3.6 TolR protein compare
Ga0059261_2378 -1.5 -3.3 phage virion morphogenesis (putative tail completion) protein compare
Ga0059261_2707 -1.5 -6.4 fructose-1,6-bisphosphatase, class II compare
Ga0059261_3160 -1.3 -3.7 TolQ protein compare
Ga0059261_0349 -1.3 -4.0 MarR family compare
Ga0059261_4012 -1.3 -2.1 AMP nucleosidase compare
Ga0059261_3157 -1.2 -8.2 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_4186 -1.2 -1.3 Phosphopantetheine attachment site compare
Ga0059261_3506 -1.2 -2.2 Predicted permeases compare
Ga0059261_2700 -1.2 -7.8 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_0664 -1.2 -1.9 pseudouridine synthase, RluA family compare
Ga0059261_1830 -1.2 -2.0 hypothetical protein compare
Ga0059261_0175 -1.2 -6.0 heme exporter protein CcmC compare
Ga0059261_0613 -1.2 -3.3 FecR family protein compare
Ga0059261_0037 -1.1 -6.2 hypothetical protein compare
Ga0059261_2684 -1.1 -3.1 hypothetical protein compare
Ga0059261_3227 -1.1 -1.7 GTP-binding protein YchF compare
Ga0059261_0369 -1.1 -1.9 ribosomal protein L9 compare
Ga0059261_2498 -1.0 -2.5 hypothetical protein compare
Ga0059261_0627 -1.0 -1.3 cobalamin-5'-phosphate synthase (EC 2.7.8.26) compare
Ga0059261_3520 -1.0 -6.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_3430 -1.0 -2.6 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_3156 -1.0 -3.7 peptidoglycan-associated lipoprotein compare
Ga0059261_2714 -1.0 -6.0 drug resistance transporter, Bcr/CflA subfamily conserved
Ga0059261_4217 -0.9 -1.6 hypothetical protein compare
Ga0059261_0321 -0.9 -1.5 hypothetical protein compare
Ga0059261_0170 -0.9 -3.0 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_1600 -0.9 -1.9 Domain of unknown function (DUF4167) compare
Ga0059261_2189 -0.9 -4.6 uncharacterized domain 1 compare
Ga0059261_4187 -0.9 -4.5 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_0172 -0.9 -5.1 Cytochrome c biogenesis factor compare
Ga0059261_2371 -0.9 -3.1 hypothetical protein compare
Ga0059261_1652 -0.9 -1.3 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_3211 -0.9 -4.9 hypothetical protein compare
Ga0059261_3191 -0.8 -4.4 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_0136 -0.8 -2.6 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_2680 -0.8 -0.9 hypothetical protein compare
Ga0059261_3695 -0.8 -4.8 Predicted metal-dependent hydrolase with the TIM-barrel fold compare
Ga0059261_1408 -0.8 -1.3 Domain of unknown function (DUF4168) compare
Ga0059261_1870 -0.8 -3.7 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_0089 -0.7 -3.2 trigger factor compare
Ga0059261_3488 -0.7 -0.9 Histidine kinase/HAMP domain compare
Ga0059261_3255 -0.7 -4.6 hypothetical protein compare
Ga0059261_1119 -0.7 -1.9 Chemotaxis signal transduction protein compare
Ga0059261_4025 -0.7 -1.1 Nucleotidyl transferase compare
Ga0059261_2050 -0.7 -2.3 hypothetical protein compare
Ga0059261_0551 -0.7 -3.1 Cytochrome c2 compare
Ga0059261_1564 -0.7 -3.0 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_1360 -0.7 -4.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_0255 -0.7 -1.4 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_0671 -0.7 -2.5 Uncharacterized conserved protein compare
Ga0059261_1369 -0.7 -4.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_0807 -0.7 -2.7 RNA methyltransferase, RsmE family compare
Ga0059261_1017 -0.7 -3.0 tRNA-guanine transglycosylase compare
Ga0059261_3871 -0.7 -1.1 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_3365 -0.7 -2.3 hypothetical protein compare
Ga0059261_2266 -0.7 -2.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3442 -0.7 -2.5 HTH domain compare
Ga0059261_3995 -0.6 -3.4 succinylarginine dihydrolase (EC 3.5.3.23) compare
Ga0059261_1370 -0.6 -3.8 Signal transduction histidine kinase compare
Ga0059261_3502 -0.6 -1.7 Fatty acid desaturase compare
Ga0059261_1871 -0.6 -3.6 ABC transport permease subunit compare
Ga0059261_2181 -0.6 -4.5 penicillin-binding protein, 1A family compare
Ga0059261_1075 -0.6 -1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_3347 -0.6 -1.8 Domain of unknown function DUF87 compare
Ga0059261_2005 -0.6 -2.3 protoheme IX farnesyltransferase compare
Ga0059261_0013 -0.6 -2.1 hypothetical protein compare
Ga0059261_2481 -0.6 -3.0 Ppx/GppA phosphatase family compare
Ga0059261_3174 -0.6 -2.5 EF hand compare
Ga0059261_2213 -0.6 -2.6 Domain of unknown function (DUF3576) compare
Ga0059261_3153 -0.6 -1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_3561 -0.6 -2.9 Uncharacterized conserved protein compare
Ga0059261_3833 -0.6 -1.7 hypothetical protein compare
Ga0059261_3083 -0.6 -1.6 hypothetical protein compare
Ga0059261_2987 -0.6 -1.2 hypothetical protein compare
Ga0059261_0239 -0.6 -0.9 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_1011 -0.6 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Ga0059261_3085 -0.6 -1.3 Predicted transcriptional regulators compare
Ga0059261_1560 -0.5 -1.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_1530 -0.5 -2.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_2137 -0.5 -4.1 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_1032 -0.5 -1.5 protein CrcB compare
Ga0059261_0622 -0.5 -2.5 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Ga0059261_2267 -0.5 -3.6 Predicted Rossmann fold nucleotide-binding protein compare
Ga0059261_2294 -0.5 -1.1 Cell division protein compare
Ga0059261_1957 -0.5 -2.4 hypothetical protein compare
Ga0059261_0069 -0.5 -2.6 tRNA dimethylallyltransferase compare
Ga0059261_2618 -0.5 -1.9 Protein of unknown function (DUF2721) compare
Ga0059261_1791 -0.5 -0.8 hypothetical protein compare
Ga0059261_2293 -0.5 -2.5 cell division ATP-binding protein FtsE compare
Ga0059261_2350 -0.5 -1.3 hypothetical protein compare
Ga0059261_2462 -0.5 -2.2 Predicted transcriptional regulators compare
Ga0059261_2021 -0.5 -3.7 Protein of unknown function (DUF2029) compare
Ga0059261_1756 -0.5 -1.0 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_0126 -0.5 -3.4 hydrolase, TatD family compare
Ga0059261_3595 -0.5 -2.0 Site-specific recombinase XerD compare
Ga0059261_1417 -0.5 -1.5 transcriptional regulator, XRE family compare
Ga0059261_0647 -0.5 -2.2 tRNA pseudouridine(38-40) synthase compare
Ga0059261_2179 -0.5 -3.2 Phospholipid N-methyltransferase compare
Ga0059261_1869 -0.5 -2.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_2034 -0.5 -3.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_3898 -0.5 -1.8 hypothetical protein compare
Ga0059261_1316 -0.5 -0.5 hypothetical protein compare
Ga0059261_3755 -0.5 -0.9 Protein of unknown function (DUF2798) compare
Ga0059261_0879 -0.5 -2.7 ribosomal RNA small subunit methyltransferase A compare
Ga0059261_2821 -0.5 -2.6 hypothetical protein compare
Ga0059261_1169 -0.5 -1.7 hypothetical protein compare
Ga0059261_3207 -0.5 -1.8 Disulfide bond chaperones of the HSP33 family compare
Ga0059261_1197 -0.5 -1.8 hypothetical protein compare
Ga0059261_0909 -0.5 -1.6 hypothetical protein compare
Ga0059261_3671 -0.5 -1.1 Citrate lyase beta subunit compare
Ga0059261_4209 -0.5 -3.7 Transglycosylase SLT domain compare
Ga0059261_2501 -0.5 -2.6 C-terminal peptidase (prc) compare
Ga0059261_1878 -0.5 -2.0 RND family efflux transporter, MFP subunit compare
Ga0059261_0656 -0.4 -1.4 Predicted dehydrogenases and related proteins compare
Ga0059261_0626 -0.4 -1.3 Fructose-2,6-bisphosphatase compare
Ga0059261_2194 -0.4 -1.3 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
Ga0059261_4228 -0.4 -1.4 hypothetical protein compare
Ga0059261_0638 -0.4 -3.6 type I secretion outer membrane protein, TolC family compare
Ga0059261_4204 -0.4 -1.3 transcriptional regulator, TetR family compare
Ga0059261_1507 -0.4 -1.0 deoxycytidine triphosphate deaminase compare
Ga0059261_2840 -0.4 -1.8 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1078 -0.4 -0.9 Response regulator receiver domain compare
Ga0059261_2742 -0.4 -1.3 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
Ga0059261_0214 -0.4 -3.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Ga0059261_1811 -0.4 -1.2 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_1291 -0.4 -1.5 transcriptional regulator, HxlR family compare
Ga0059261_1438 -0.4 -2.0 Membrane proteins related to metalloendopeptidases compare
Ga0059261_2418 -0.4 -1.7 lycopene cyclase compare
Ga0059261_3490 -0.4 -2.4 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_1563 -0.4 -1.4 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_4120 -0.4 -0.7 Stress responsive A/B Barrel Domain compare
Ga0059261_2754 -0.4 -3.5 ABC-type branched-chain amino acid transport systems, periplasmic component compare
Ga0059261_0963 -0.4 -1.9 hypothetical protein compare
Ga0059261_3838 -0.4 -2.1 Hemerythrin HHE cation binding domain compare
Ga0059261_3251 -0.4 -1.6 Transcriptional regulator compare
Ga0059261_0645 -0.4 -1.8 DNA replication and repair protein RecR compare
Ga0059261_0770 -0.4 -1.0 hypothetical protein compare
Ga0059261_4143 -0.4 -1.9 hypothetical protein compare
Ga0059261_1087 -0.4 -2.0 hypothetical protein compare
Ga0059261_2090 -0.4 -2.2 flagellar basal-body rod protein FlgC compare
Ga0059261_2988 -0.4 -2.1 TonB family C-terminal domain compare
Ga0059261_3209 -0.4 -2.9 queuosine biosynthesis protein QueC compare
Ga0059261_0464 -0.4 -0.7 hypothetical protein compare
Ga0059261_3512 -0.4 -0.5 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_3238 -0.4 -1.0 hypothetical protein compare
Ga0059261_2697 -0.4 -3.4 Membrane carboxypeptidase/penicillin-binding protein compare
Ga0059261_1397 -0.4 -3.1 Cyclopropane fatty acid synthase and related methyltransferases compare
Ga0059261_3472 -0.4 -2.5 Sporulation related domain compare
Ga0059261_0562 -0.4 -1.9 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
Ga0059261_2214 -0.4 -2.3 hypothetical protein compare
Ga0059261_1259 -0.4 -1.5 Ribbon-helix-helix domain compare
Ga0059261_0991 -0.4 -2.6 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Ga0059261_3979 -0.4 -1.2 elongation factor 4 compare
Ga0059261_0856 -0.4 -1.7 Uncharacterized conserved protein compare
Ga0059261_1932 -0.4 -3.1 Peptidase family M23 compare
Ga0059261_2907 -0.4 -1.8 Acyl-CoA dehydrogenases compare
Ga0059261_0734 -0.4 -2.3 RNA compare
Ga0059261_2568 -0.4 -1.2 P-type conjugative transfer protein TrbJ compare
Ga0059261_0385 -0.4 -1.7 P-type conjugative transfer protein TrbJ compare
Ga0059261_0891 -0.4 -1.0 hypothetical protein compare
Ga0059261_0620 -0.4 -3.0 Outer membrane cobalamin receptor protein compare
Ga0059261_3714 -0.4 -1.8 Acyl-CoA hydrolase compare
Ga0059261_0039 -0.4 -2.0 His Kinase A (phospho-acceptor) domain compare
Ga0059261_1842 -0.4 -3.2 Protease II compare
Ga0059261_4224 -0.4 -0.7 hypothetical protein compare
Ga0059261_2314 -0.4 -1.3 Protein-disulfide isomerase compare
Ga0059261_3305 -0.4 -1.3 Uncharacterized conserved protein compare
Ga0059261_0204 -0.4 -1.4 protein RecA compare
Ga0059261_3190 -0.4 -2.7 3-isopropylmalate dehydrogenase compare
Ga0059261_3562 -0.4 -1.0 Glycosyltransferase compare
Ga0059261_3971 -0.4 -1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_0921 -0.4 -0.7 hypothetical protein compare
Ga0059261_0153 -0.4 -0.9 Serine acetyltransferase compare
Ga0059261_0684 -0.3 -1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_2943 -0.3 -1.6 hypothetical protein compare
Ga0059261_0237 -0.3 -1.0 phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ga0059261_0928 -0.3 -2.2 Glyoxalase-like domain compare
Ga0059261_3604 -0.3 -0.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_0964 -0.3 -1.0 Superfamily II DNA and RNA helicases compare
Ga0059261_2948 -0.3 -1.7 Putative copper export protein compare
Ga0059261_2247 -0.3 -2.3 Beta-lactamase class A compare
Ga0059261_1846 -0.3 -2.1 Xaa-Pro aminopeptidase compare
Ga0059261_3284 -0.3 -2.6 acetyl-CoA acetyltransferases compare
Ga0059261_0448 -0.3 -0.5 hypothetical protein compare
Ga0059261_0955 -0.3 -1.7 PilZ domain compare
Ga0059261_2885 -0.3 -1.0 Electron transfer flavoprotein, alpha subunit compare
Ga0059261_0920 -0.3 -1.2 rRNA methylases compare
Ga0059261_2338 -0.3 -1.8 TonB family C-terminal domain compare
Ga0059261_3617 -0.3 -2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Tetracycline hydrochloride across organisms