Experiment set2IT094 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Tetracycline hydrochloride 0.002 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_3939 +1.6 10.3 transcriptional regulator, TetR family compare
Ga0059261_3938 +1.3 9.2 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_3937 +1.1 8.7 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_1351 +1.1 8.8 signal peptide peptidase SppA, 67K type compare
Ga0059261_3125 +1.0 2.5 Imidazoleglycerol-phosphate synthase compare
Ga0059261_1257 +1.0 5.3 Uncharacterized iron-regulated protein compare
Ga0059261_2020 +1.0 7.8 Glycosyltransferase compare
Ga0059261_1545 +1.0 4.8 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_0411 +0.9 3.7 Uncharacterized conserved protein compare
Ga0059261_3783 +0.9 3.9 hypothetical protein compare
Ga0059261_0059 +0.9 3.0 Stress-induced morphogen (activity unknown) compare
Ga0059261_4013 +0.9 3.0 hypothetical protein compare
Ga0059261_2286 +0.8 4.7 Fe2+ transport system protein B compare
Ga0059261_2981 +0.8 6.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_2980 +0.8 7.3 Outer membrane protein compare
Ga0059261_2746 +0.8 4.5 Predicted sugar nucleotidyltransferases compare
Ga0059261_2019 +0.8 2.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_3129 +0.8 5.1 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_3569 +0.8 2.7 chaperone protein DnaJ compare
Ga0059261_0685 +0.7 1.4 pyruvate kinase compare
Ga0059261_2992 +0.7 2.9 Biopolymer transport protein compare
Ga0059261_3103 +0.7 3.3 Glycosyltransferase compare
Ga0059261_3784 +0.7 5.8 DNA mismatch repair protein MutS compare
Ga0059261_1904 +0.7 1.4 Asparaginase compare
Ga0059261_0725 +0.7 2.1 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_1349 +0.7 2.8 hypothetical protein compare
Ga0059261_2951 +0.7 1.5 Heavy-metal resistance compare
Ga0059261_0875 +0.6 1.6 Leucyl aminopeptidase compare
Ga0059261_2239 +0.6 4.2 tRNA and rRNA cytosine-C5-methylases compare
Ga0059261_0268 +0.6 2.6 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Ga0059261_2285 +0.6 1.2 Fe2+ transport system protein A compare
Ga0059261_1261 +0.6 2.5 hypothetical protein compare
Ga0059261_3321 +0.6 1.6 pyrroline-5-carboxylate reductase compare
Ga0059261_3289 +0.6 1.8 Predicted membrane protein compare
Ga0059261_2929 +0.6 1.4 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_2892 +0.6 2.1 hypothetical protein compare
Ga0059261_3141 +0.6 1.7 Acetyltransferases compare
Ga0059261_4054 +0.6 1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_1380 +0.6 4.2 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2277 +0.6 1.4 hypothetical protein compare
Ga0059261_3356 +0.6 1.0 hypothetical protein compare
Ga0059261_1724 +0.6 1.6 hypothetical protein compare
Ga0059261_3909 +0.6 2.5 Predicted membrane protein compare
Ga0059261_2365 +0.6 1.7 Mu-like prophage FluMu protein gp41 compare
Ga0059261_2744 +0.6 4.2 CDP-alcohol phosphatidyltransferase compare
Ga0059261_1596 +0.6 1.8 CBS domain compare
Ga0059261_1265 +0.6 2.0 hypothetical protein compare
Ga0059261_1847 +0.6 2.3 hypothetical protein compare
Ga0059261_0612 +0.6 2.0 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_0084 +0.5 2.1 hypothetical protein compare
Ga0059261_1181 +0.5 1.2 hypothetical protein compare
Ga0059261_1381 +0.5 2.2 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_3124 +0.5 2.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_3119 +0.5 2.0 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_2745 +0.5 4.2 Myo-inositol-1-phosphate synthase compare
Ga0059261_3966 +0.5 2.1 Transcriptional regulators compare
Ga0059261_3451 +0.5 1.2 hypothetical protein compare
Ga0059261_1527 +0.5 0.8 hypothetical protein compare
Ga0059261_1929 +0.5 2.4 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_0657 +0.5 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0650 +0.5 1.0 Negative regulator of beta-lactamase expression compare
Ga0059261_0131 +0.5 2.1 hypothetical protein compare
Ga0059261_3947 +0.5 1.7 type II secretion system protein I (GspI) compare
Ga0059261_3638 +0.5 1.3 Predicted integral membrane protein (DUF2282) compare
Ga0059261_2531 +0.5 1.3 conserved hypothetical integral membrane protein compare
Ga0059261_0305 +0.5 1.7 bacterioferritin compare
Ga0059261_2417 +0.5 1.7 phytoene desaturase compare
Ga0059261_2663 +0.5 0.8 Domain of unknown function (DUF718) compare
Ga0059261_2109 +0.5 1.5 hypothetical protein compare
Ga0059261_1145 +0.5 1.1 flagella basal body P-ring formation protein FlgA compare
Ga0059261_1214 +0.5 1.1 hypothetical protein compare
Ga0059261_3605 +0.5 1.2 tRNA compare
Ga0059261_0973 +0.5 1.8 hypothetical protein compare
Ga0059261_0593 +0.5 2.4 Outer membrane protein compare
Ga0059261_3839 +0.5 1.6 hypothetical protein compare
Ga0059261_2347 +0.5 1.6 hypothetical protein compare
Ga0059261_0223 +0.5 0.9 Peptidase inhibitor I78 family compare
Ga0059261_2391 +0.5 1.2 Helix-turn-helix domain compare
Ga0059261_1300 +0.4 1.3 hypothetical protein compare
Ga0059261_1928 +0.4 2.3 Predicted permeases compare
Ga0059261_2097 +0.4 1.8 Rod binding protein compare
Ga0059261_0525 +0.4 0.9 Transcriptional regulator compare
Ga0059261_2825 +0.4 2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_1318 +0.4 1.6 Uncharacterized MobA-related protein compare
Ga0059261_3759 +0.4 1.0 hypothetical protein compare
Ga0059261_0796 +0.4 0.9 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Ga0059261_4029 +0.4 2.6 hypothetical protein compare
Ga0059261_1258 +0.4 4.1 TonB-dependent siderophore receptor compare
Ga0059261_3441 +0.4 1.9 hypothetical protein compare
Ga0059261_0773 +0.4 1.6 Esterase/lipase compare
Ga0059261_3620 +0.4 1.4 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_2916 +0.4 1.4 P-type conjugative transfer protein TrbJ compare
Ga0059261_0493 +0.4 1.1 hypothetical protein compare
Ga0059261_0121 +0.4 1.1 Sporulation related domain compare
Ga0059261_0272 +0.4 1.4 Uncharacterized small protein compare
Ga0059261_0749 +0.4 2.2 Membrane transporters of cations and cationic drugs compare
Ga0059261_1047 +0.4 1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Ga0059261_0208 +0.4 1.7 Response regulator receiver domain compare
Ga0059261_3879 +0.4 1.7 outer membrane autotransporter barrel domain compare
Ga0059261_3801 +0.4 1.6 Phosphate/sulphate permeases compare
Ga0059261_0433 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3282 +0.4 2.7 Transcriptional regulators compare
Ga0059261_3128 +0.4 3.2 capsular exopolysaccharide family compare
Ga0059261_2088 +0.4 2.0 Flagellar motor component compare
Ga0059261_3632 +0.4 2.0 Predicted transcriptional regulators compare
Ga0059261_2368 +0.4 1.1 Phage baseplate assembly protein W compare
Ga0059261_1461 +0.4 2.2 Metal-dependent hydrolase compare
Ga0059261_0156 +0.4 2.5 alkyl hydroperoxide reductase subunit F compare
Ga0059261_3882 +0.4 1.6 dimethyladenosine transferase (EC 2.1.1.-) compare
Ga0059261_1831 +0.4 0.9 hypothetical protein compare
Ga0059261_0390 +0.4 0.6 Ribbon-helix-helix protein, copG family compare
Ga0059261_1743 +0.4 1.4 hypothetical protein compare
Ga0059261_1574 +0.4 1.3 Superfamily II DNA and RNA helicases compare
Ga0059261_3522 +0.4 1.8 Micrococcal nuclease (thermonuclease) homologs compare
Ga0059261_3581 +0.4 2.1 Alpha/beta hydrolase family compare
Ga0059261_0155 +0.4 2.7 peroxiredoxin compare
Ga0059261_3114 +0.4 2.6 hypothetical protein compare
Ga0059261_1195 +0.4 1.5 Co/Zn/Cd efflux system component compare
Ga0059261_0393 +0.4 1.3 hypothetical protein compare
Ga0059261_2589 +0.4 1.8 Protein of unknown function (DUF2493) compare
Ga0059261_1962 +0.4 1.1 RNase HII (EC 3.1.26.4) compare
Ga0059261_1039 +0.4 2.4 hypothetical protein compare
Ga0059261_1357 +0.4 2.2 hypothetical protein compare
Ga0059261_2914 +0.4 1.3 Type IV secretory pathway, TrbD component compare
Ga0059261_0918 +0.4 1.4 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_0056 +0.4 2.1 Predicted transcriptional regulator compare
Ga0059261_3579 +0.4 2.0 hypothetical protein compare
Ga0059261_0412 +0.4 1.4 DNA-binding HTH domain-containing proteins compare
Ga0059261_3121 +0.4 2.1 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3832 +0.4 2.5 Acyl-CoA synthetase (NDP forming) compare
Ga0059261_0946 +0.4 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_1389 +0.4 2.1 Mechanosensitive ion channel compare
Ga0059261_1611 +0.4 2.9 Glucose/sorbosone dehydrogenases compare
Ga0059261_1263 +0.4 1.0 hypothetical protein compare
Ga0059261_3752 +0.3 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_0449 +0.3 1.3 Uncharacterized protein, homolog of Cu resistance protein CopC compare
Ga0059261_2528 +0.3 2.0 Uncharacterized conserved protein compare
Ga0059261_3437 +0.3 0.7 hypothetical protein compare
Ga0059261_0810 +0.3 1.6 Predicted Zn-dependent proteases and their inactivated homologs compare
Ga0059261_0723 +0.3 1.2 hypothetical protein compare
Ga0059261_3025 +0.3 1.1 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_0034 +0.3 2.0 Putative threonine efflux protein compare
Ga0059261_1569 +0.3 1.1 Response regulator receiver domain compare
Ga0059261_3722 +0.3 2.3 Methyltransferase domain compare
Ga0059261_1196 +0.3 1.0 hypothetical protein compare
Ga0059261_4053 +0.3 1.0 hypothetical protein compare
Ga0059261_0497 +0.3 1.5 hypothetical protein compare
Ga0059261_0127 +0.3 1.7 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Ga0059261_2998 +0.3 2.0 periplasmic chaperone for outer membrane proteins Skp compare
Ga0059261_3196 +0.3 0.6 Transcriptional regulator compare
Ga0059261_3646 +0.3 1.0 Uncharacterized stress protein (general stress protein 26) compare
Ga0059261_3240 +0.3 1.6 Flp pilus assembly protein TadB compare
Ga0059261_2747 +0.3 1.9 Cupin domain compare
Ga0059261_4234 +0.3 2.3 Multidrug resistance efflux pump compare
Ga0059261_0028 +0.3 1.5 Predicted transcriptional regulators compare
Ga0059261_3308 +0.3 1.2 Uncharacterized conserved protein compare
Ga0059261_3335 +0.3 1.0 hypothetical protein compare
Ga0059261_1653 +0.3 2.0 Uncharacterized conserved protein compare
Ga0059261_3539 +0.3 2.5 Reverse transcriptase (RNA-dependent DNA polymerase) compare
Ga0059261_3803 +0.3 1.3 RND family efflux transporter, MFP subunit compare
Ga0059261_3685 +0.3 1.8 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_2255 +0.3 1.3 nitrogen regulatory protein P-II family compare
Ga0059261_1310 +0.3 1.1 Predicted transcriptional regulators compare
Ga0059261_2534 +0.3 1.3 3-hydroxyacyl-CoA dehydrogenase compare
Ga0059261_0931 +0.3 1.0 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_2774 +0.3 0.8 Transcription elongation factor compare
Ga0059261_4044 +0.3 1.6 FOG: EAL domain compare
Ga0059261_2763 +0.3 1.5 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_1676 +0.3 2.0 transcriptional regulator, IclR family compare
Ga0059261_0473 +0.3 1.7 Predicted Fe-S protein compare
Ga0059261_2053 +0.3 2.1 Mg2+ and Co2+ transporters compare
Ga0059261_3590 +0.3 2.1 transcriptional regulator, LysR family compare
Ga0059261_2101 +0.3 0.9 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_0726 +0.3 0.8 hypothetical protein compare
Ga0059261_3130 +0.3 1.9 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_0371 +0.3 2.0 DNA mismatch repair protein MutL compare
Ga0059261_2642 +0.3 2.7 Beta-galactosidase compare
Ga0059261_3419 +0.3 1.9 hypothetical protein compare
Ga0059261_0045 +0.3 1.4 hypothetical protein compare
Ga0059261_1394 +0.3 2.0 putative efflux protein, MATE family compare
Ga0059261_4171 +0.3 1.2 redox-sensitive transcriptional activator SoxR compare
Ga0059261_2755 +0.3 1.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
Ga0059261_0301 +0.3 1.8 hypothetical protein compare
Ga0059261_3186 +0.3 2.0 Excinuclease ABC subunit C compare
Ga0059261_2063 +0.3 1.2 Flagellar biosynthesis protein, FliO compare
Ga0059261_3064 +0.3 0.9 hypothetical protein compare
Ga0059261_2154 +0.3 1.0 uncharacterized domain 1 compare
Ga0059261_1041 +0.3 1.6 transcriptional regulator, LysR family compare
Ga0059261_0249 +0.3 2.0 Superfamily I DNA and RNA helicases compare
Ga0059261_2355 +0.3 1.8 Ogr/Delta-like zinc finger compare
Ga0059261_1485 +0.3 1.7 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Ga0059261_1909 +0.3 1.9 MAF protein compare
Ga0059261_0287 +0.3 1.7 hypothetical protein compare
Ga0059261_1876 +0.3 1.7 Predicted membrane protein compare
Ga0059261_1404 +0.3 1.6 transcriptional regulator, BadM/Rrf2 family compare
Ga0059261_0387 +0.3 1.1 Type IV secretory pathway, TrbD component compare
Ga0059261_3961 +0.3 2.4 Urocanate hydratase (EC 4.2.1.49) (from data) compare
Ga0059261_2558 +0.3 1.7 DoxX-like family compare
Ga0059261_3090 +0.3 1.6 Uncharacterized proteins, LmbE homologs compare
Ga0059261_0073 +0.3 1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Tetracycline hydrochloride across organisms