Experiment set2IT094 for Cupriavidus basilensis FW507-4G11

Compare to:

D-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.9 -4.7 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.6 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.3 -4.3 3-isopropylmalate dehydratase compare
RR42_RS16255 -6.3 -7.4 sulfate adenylyltransferase compare
RR42_RS16265 -6.2 -5.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS14400 -6.2 -4.3 isopropylmalate isomerase compare
RR42_RS14365 -6.1 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS06485 -6.0 -7.2 chorismate synthase compare
RR42_RS33255 -6.0 -3.9 protein-tyrosine phosphatase compare
RR42_RS30655 -6.0 -5.8 LysR family transcriptional regulator compare
RR42_RS16275 -5.6 -3.9 membrane protein compare
RR42_RS16250 -5.4 -7.4 sulfate adenylyltransferase compare
RR42_RS33240 -5.3 -13.7 GDP-L-fucose synthase compare
RR42_RS01160 -5.3 -12.0 homoserine O-acetyltransferase compare
RR42_RS19005 -5.3 -6.3 3-dehydroquinate synthase compare
RR42_RS14320 -5.2 -6.2 O-succinylhomoserine sulfhydrylase compare
RR42_RS04475 -5.1 -12.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS05860 -4.9 -5.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS00830 -4.8 -6.6 cell division protein FtsN compare
RR42_RS16270 -4.7 -10.8 sulfite reductase compare
RR42_RS12980 -4.7 -6.6 chemotaxis protein CheY compare
RR42_RS18300 -4.6 -6.1 anthranilate synthase subunit II compare
RR42_RS16280 -4.4 -6.9 transcriptional regulator compare
RR42_RS14385 -4.4 -7.8 3-isopropylmalate dehydrogenase compare
RR42_RS15905 -4.4 -12.2 phosphoenolpyruvate carboxylase compare
RR42_RS18295 -4.3 -12.4 anthranilate synthase component I compare
RR42_RS16965 -4.3 -7.1 ABC transporter compare
RR42_RS33210 -4.3 -7.0 teichoic acid biosynthesis protein compare
RR42_RS16245 -4.2 -6.2 uroporphyrin-III methyltransferase compare
RR42_RS11795 -4.2 -2.3 PEP synthetase regulatory protein compare
RR42_RS12040 -4.2 -14.3 MFS transporter compare
RR42_RS33235 -4.1 -9.8 GDP-mannose 4,6-dehydratase compare
RR42_RS15890 -4.0 -9.7 heme biosynthesis protein HemY compare
RR42_RS33250 -4.0 -8.6 tyrosine protein kinase compare
RR42_RS02705 -4.0 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS18990 -4.0 -18.5 glutamate synthase compare
RR42_RS33260 -3.9 -7.3 multidrug MFS transporter compare
RR42_RS18840 -3.9 -5.5 2-alkenal reductase compare
RR42_RS16960 -3.9 -7.7 ABC transporter ATP-binding protein compare
RR42_RS17645 -3.8 -8.8 shikimate dehydrogenase compare
RR42_RS33245 -3.7 -8.5 mannose-1-phosphate guanyltransferase compare
RR42_RS30660 -3.7 -8.7 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS33355 -3.7 -7.3 membrane protein compare
RR42_RS19010 -3.6 -6.6 shikimate kinase compare
RR42_RS15470 -3.6 -1.9 biopolymer transporter ExbD compare
RR42_RS07555 -3.5 -3.6 potassium transporter Kup compare
RR42_RS11885 -3.5 -9.4 (protein-PII) uridylyltransferase compare
RR42_RS11790 -3.4 -7.3 phosphoenolpyruvate synthase compare
RR42_RS35875 -3.4 -11.9 UDP-galactose-4-epimerase compare
RR42_RS02085 -3.4 -8.6 RNA polymerase subunit sigma-54 compare
RR42_RS16970 -3.4 -11.0 ABC transporter ATP-binding protein compare
RR42_RS05955 -3.3 -2.0 hypothetical protein compare
RR42_RS12985 -3.3 -7.4 histidine kinase compare
RR42_RS16975 -3.3 -8.6 ABC transporter permease compare
RR42_RS01290 -3.2 -8.5 thiamine biosynthesis protein ThiC compare
RR42_RS01845 -3.2 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS33215 -3.2 -13.4 transferase compare
RR42_RS04700 -3.2 -1.9 ribonuclease G compare
RR42_RS16980 -3.1 -16.7 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS01775 -3.1 -7.3 glutamate--cysteine ligase compare
RR42_RS15455 -3.1 -8.1 membrane protein compare
RR42_RS06095 -3.1 -5.8 hypothetical protein compare
RR42_RS19090 -3.1 -2.8 cytochrome C compare
RR42_RS04535 -3.0 -4.8 cysteine synthase compare
RR42_RS07365 -3.0 -4.3 pyruvate dehydrogenase compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS15475 -3.0 -8.5 protein tolQ compare
RR42_RS18985 -2.9 -4.7 glutamate synthase compare
RR42_RS01680 -2.8 -8.9 cytochrome C550 compare
RR42_RS19065 -2.8 -9.5 transcriptional regulator compare
RR42_RS17105 -2.8 -10.5 Clp protease ClpX compare
RR42_RS24605 -2.8 -7.2 TetR family transcriptional regulator compare
RR42_RS15895 -2.8 -7.4 uroporphyrinogen III methyltransferase compare
RR42_RS01780 -2.7 -7.5 glutathione synthetase compare
RR42_RS02810 -2.7 -2.6 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS16240 -2.6 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS04460 -2.6 -5.0 chorismate mutase compare
RR42_RS07605 -2.6 -5.7 poly-beta-hydroxybutyrate polymerase compare
RR42_RS00725 -2.5 -3.4 hypothetical protein compare
RR42_RS04895 -2.4 -12.2 serine/threonine protein phosphatase compare
RR42_RS13015 -2.4 -7.3 fatty acid hydroxylase compare
RR42_RS17060 -2.4 -14.1 histidine kinase compare
RR42_RS18850 -2.4 -2.2 preprotein translocase subunit TatC compare
RR42_RS18855 -2.4 -4.7 preprotein translocase compare
RR42_RS04320 -2.4 -7.0 cell division protein FtsK compare
RR42_RS26935 -2.3 -6.5 farnesyl-diphosphate farnesyltransferase compare
RR42_RS05990 -2.3 -7.7 aromatic amino acid aminotransferase compare
RR42_RS18820 -2.3 -8.1 cytochrome B compare
RR42_RS17055 -2.3 -9.1 LuxR family transcriptional regulator compare
RR42_RS15460 -2.3 -6.8 translocation protein TolB compare
RR42_RS04585 -2.2 -7.4 amino acid dehydrogenase conserved
RR42_RS17620 -2.2 -3.0 phosphatidylglycerophosphatase compare
RR42_RS04590 -2.2 -9.0 AsnC family transcriptional regulator compare
RR42_RS13800 -2.2 -6.8 formyltetrahydrofolate deformylase compare
RR42_RS01795 -2.1 -11.8 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS16260 -2.1 -1.3 phosphoadenosine phosphosulfate reductase compare
RR42_RS21220 -2.1 -2.3 iron transporter FeoB compare
RR42_RS14790 -2.1 -7.5 cobalamin biosynthesis protein CobD compare
RR42_RS07360 -2.1 -3.1 ATPase compare
RR42_RS02045 -2.0 -10.3 GTPase compare
RR42_RS18815 -2.0 -4.6 cytochrome C compare
RR42_RS37400 -2.0 -1.6 6-phosphogluconolactonase compare
RR42_RS18825 -1.9 -3.3 ubiquinol-cytochrome C reductase compare
RR42_RS18485 -1.9 -1.5 glutaredoxin compare
RR42_RS09100 -1.8 -9.8 transcriptional regulator compare
RR42_RS20205 -1.8 -3.3 chromosome partitioning protein compare
RR42_RS03080 -1.8 -3.0 recombinase RecA compare
RR42_RS17390 -1.8 -7.5 ATP-dependent DNA helicase RecG compare
RR42_RS03095 -1.7 -2.0 succinyl-CoA synthetase subunit beta compare
RR42_RS06020 -1.7 -1.2 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS01820 -1.7 -6.9 peptidase S41 compare
RR42_RS01720 -1.7 -2.9 membrane protein compare
RR42_RS13910 -1.7 -5.4 glutamate racemase compare
RR42_RS25785 -1.6 -3.0 TetR family transcriptional regulator compare
RR42_RS15410 -1.6 -4.5 membrane protein compare
RR42_RS12550 -1.6 -3.8 hypothetical protein compare
RR42_RS12925 -1.6 -2.7 ATPase compare
RR42_RS21300 -1.6 -6.2 GntR family transcriptional regulator compare
RR42_RS15415 -1.6 -3.6 membrane protein compare
RR42_RS02500 -1.6 -1.8 TetR family transcriptional regulator compare
RR42_RS13195 -1.5 -3.3 protein-L-isoaspartate O-methyltransferase compare
RR42_RS21285 -1.5 -5.7 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS33575 -1.5 -2.5 hypothetical protein compare
RR42_RS01830 -1.5 -5.7 sulfurtransferase compare
RR42_RS14055 -1.5 -2.8 elongation factor 4 compare
RR42_RS18270 -1.5 -4.6 murein transglycosylase compare
RR42_RS30320 -1.5 -2.7 hypothetical protein compare
RR42_RS21280 -1.5 -6.5 L-lactate permease compare
RR42_RS29865 -1.5 -2.5 hypothetical protein compare
RR42_RS31285 -1.5 -2.2 XRE family transcriptional regulator compare
RR42_RS00115 -1.4 -1.5 hypothetical protein compare
RR42_RS01380 -1.4 -1.7 membrane protein compare
RR42_RS01920 -1.4 -2.4 protoheme IX farnesyltransferase compare
RR42_RS08945 -1.4 -1.6 hypothetical protein compare
RR42_RS15465 -1.3 -1.6 TonB-dependent receptor compare
RR42_RS01885 -1.3 -4.4 cytochrome C oxidase assembly protein compare
RR42_RS17865 -1.3 -5.4 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS33195 -1.3 -8.6 UDP-sugar lipid carrier transferase compare
RR42_RS08365 -1.3 -5.1 hypothetical protein compare
RR42_RS30640 -1.3 -5.7 DNA mismatch repair protein MutT compare
RR42_RS21095 -1.3 -4.4 GntR family transcriptional regulator compare
RR42_RS17260 -1.3 -4.0 ABC transporter ATP-binding protein compare
RR42_RS31530 -1.3 -1.9 histidine kinase compare
RR42_RS07380 -1.3 -3.0 dihydrolipoamide dehydrogenase compare
RR42_RS17720 -1.3 -2.6 sugar kinase compare
RR42_RS07620 -1.3 -3.0 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS08210 -1.2 -1.3 hypothetical protein compare
RR42_RS01875 -1.2 -5.0 cytochrome C oxidase subunit II compare
RR42_RS05485 -1.2 -1.6 polynucleotide phosphorylase/polyadenylase compare
RR42_RS21040 -1.2 -1.1 hypothetical protein compare
RR42_RS00760 -1.2 -2.6 hypothetical protein compare
RR42_RS20775 -1.2 -1.1 hypothetical protein compare
RR42_RS16675 -1.2 -1.5 hypothetical protein compare
RR42_RS21295 -1.2 -3.0 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS29785 -1.2 -3.3 hypothetical protein compare
RR42_RS04470 -1.2 -2.9 prephenate dehydrogenase compare
RR42_RS06630 -1.2 -1.7 integration host factor subunit alpha compare
RR42_RS19410 -1.2 -4.3 GntR family transcriptional regulator compare
RR42_RS12015 -1.2 -2.8 dihydrolipoamide acyltransferase compare
RR42_RS18365 -1.2 -2.0 GTP-binding protein compare
RR42_RS01690 -1.2 -1.8 ferredoxin compare
RR42_RS00380 -1.2 -5.1 GntR family transcriptional regulator compare
RR42_RS12990 -1.2 -2.5 hypothetical protein compare
RR42_RS18970 -1.2 -6.8 toluene ABC transporter ATP-binding protein compare
RR42_RS30185 -1.1 -5.0 TetR family transcriptional regulator compare
RR42_RS22890 -1.1 -5.0 TetR family transcriptional regulator compare
RR42_RS04280 -1.1 -4.0 aldehyde dehydrogenase compare
RR42_RS00790 -1.1 -6.0 chemotaxis protein CheY compare
RR42_RS20535 -1.1 -5.7 3-phosphoglycerate dehydrogenase compare
RR42_RS02150 -1.1 -1.6 membrane protein compare
RR42_RS07565 -1.1 -5.6 transcription accessory protein compare
RR42_RS21290 -1.1 -2.8 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS20575 -1.1 -2.2 hypothetical protein compare
RR42_RS04145 -1.1 -1.4 peptidase A24 compare
RR42_RS07125 -1.1 -1.9 hypothetical protein compare
RR42_RS26900 -1.1 -2.5 enoyl-CoA hydratase compare
RR42_RS13025 -1.1 -2.2 hypothetical protein compare
RR42_RS13130 -1.1 -1.6 membrane protein compare
RR42_RS18930 -1.1 -3.1 BolA family transcriptional regulator compare
RR42_RS11655 -1.1 -1.0 heat-shock protein Hsp20 compare
RR42_RS19045 -1.1 -1.1 frataxin compare
RR42_RS08575 -1.1 -1.1 tail protein compare
RR42_RS17930 -1.1 -4.0 RNA pyrophosphohydrolase compare
RR42_RS26555 -1.0 -1.5 tRNA-Met compare
RR42_RS26905 -1.0 -4.0 methylcrotonoyl-CoA carboxylase compare
RR42_RS19445 -1.0 -4.2 TetR family transcriptional regulator compare
RR42_RS03170 -1.0 -3.4 hypothetical protein compare
RR42_RS33150 -1.0 -2.3 hypothetical protein compare
RR42_RS01915 -1.0 -4.5 cytochrome C oxidase subunit I compare
RR42_RS15525 -1.0 -0.9 hypothetical protein compare
RR42_RS21435 -1.0 -1.8 hypothetical protein compare
RR42_RS05905 -1.0 -2.3 hypothetical protein compare
RR42_RS05890 -1.0 -6.2 glutamine-synthetase adenylyltransferase compare
RR42_RS21755 -1.0 -1.8 shikimate dehydrogenase compare
RR42_RS01895 -1.0 -3.2 MFS transporter compare
RR42_RS02440 -1.0 -1.7 membrane protein compare
RR42_RS07150 -1.0 -1.0 hypothetical protein compare
RR42_RS18310 -1.0 -1.0 indole-3-glycerol-phosphate synthase compare
RR42_RS05500 -1.0 -1.1 preprotein translocase subunit SecG compare
RR42_RS10415 -1.0 -1.2 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source D-Alanine in Cupriavidus basilensis FW507-4G11

For nitrogen source D-Alanine across organisms