Experiment set2IT094 for Cupriavidus basilensis FW507-4G11

Compare to:

D-Alanine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS28290 +3.3 15.3 DNA-binding protein compare
RR42_RS21470 +1.5 1.5 hypothetical protein compare
RR42_RS19465 +1.2 9.3 AsnC family transcriptional regulator compare
RR42_RS03035 +1.2 1.6 membrane protein compare
RR42_RS24550 +1.1 1.9 hypothetical protein compare
RR42_RS23140 +1.1 1.0 peptidylprolyl isomerase compare
RR42_RS04810 +1.1 2.4 glycine/betaine ABC transporter permease compare
RR42_RS15640 +1.1 1.4 hypothetical protein compare
RR42_RS16360 +1.1 1.4 transposase compare
RR42_RS03980 +1.0 3.4 Fis family transcriptional regulator compare
RR42_RS10855 +1.0 1.3 diguanylate phosphodiesterase compare
RR42_RS20370 +1.0 1.7 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS25650 +0.9 1.8 hypothetical protein compare
RR42_RS08220 +0.9 1.8 hypothetical protein compare
RR42_RS25400 +0.9 3.6 MarR family transcriptional regulator compare
RR42_RS32085 +0.9 1.3 hypothetical protein compare
RR42_RS19485 +0.9 1.2 general secretion pathway protein GspH compare
RR42_RS23205 +0.9 1.2 hypothetical protein compare
RR42_RS30765 +0.9 1.2 tRNA-Arg compare
RR42_RS07920 +0.8 1.2 cyclophilin-like superfamily protein compare
RR42_RS28300 +0.8 3.9 L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) compare
RR42_RS28005 +0.8 0.9 phosphonate/organophosphate ester transporter subunit compare
RR42_RS23460 +0.8 1.3 alpha/beta hydrolase compare
RR42_RS06250 +0.8 2.0 dihydrodipicolinate synthase compare
RR42_RS13830 +0.8 1.4 hypothetical protein compare
RR42_RS20810 +0.8 2.1 hypothetical protein compare
RR42_RS35725 +0.8 1.3 flagellar biosynthesis protein FlgB compare
RR42_RS07130 +0.8 2.0 hypothetical protein compare
RR42_RS23880 +0.8 1.8 hypothetical protein compare
RR42_RS33595 +0.8 2.0 hypothetical protein compare
RR42_RS14860 +0.8 2.0 hypothetical protein compare
RR42_RS24010 +0.8 1.6 hypothetical protein compare
RR42_RS14125 +0.8 2.0 metal-binding protein compare
RR42_RS29610 +0.8 1.1 cytochrome C2 compare
RR42_RS30980 +0.8 1.7 hypothetical protein compare
RR42_RS26515 +0.8 2.1 hypothetical protein compare
RR42_RS26050 +0.8 3.3 hypothetical protein compare
RR42_RS36245 +0.8 2.6 excisionase compare
RR42_RS11805 +0.8 2.1 ribonuclease HII compare
RR42_RS08185 +0.8 1.3 hypothetical protein compare
RR42_RS17970 +0.8 1.5 hypothetical protein compare
RR42_RS08260 +0.7 1.2 hypothetical protein compare
RR42_RS05425 +0.7 3.1 membrane protein compare
RR42_RS05755 +0.7 1.5 enoyl-CoA hydratase compare
RR42_RS17595 +0.7 2.1 hypothetical protein compare
RR42_RS07200 +0.7 1.5 hypothetical protein compare
RR42_RS09590 +0.7 1.7 hypothetical protein compare
RR42_RS14700 +0.7 1.3 hypothetical protein compare
RR42_RS00360 +0.7 1.7 Asp/Glu/hydantoin racemase compare
RR42_RS19655 +0.7 1.2 tRNA-Ala compare
RR42_RS21850 +0.7 1.6 3-oxoadipate enol-lactonase compare
RR42_RS29335 +0.7 1.9 integrase compare
RR42_RS13420 +0.7 2.0 phosphohistidine phosphatase compare
RR42_RS24785 +0.7 2.8 NAD-dependent dehydratase compare
RR42_RS31435 +0.7 1.2 hypothetical protein compare
RR42_RS13470 +0.7 3.8 phosphate ABC transporter substrate-binding protein compare
RR42_RS32960 +0.7 1.4 2-dehydropantoate 2-reductase compare
RR42_RS16760 +0.7 1.9 FAD-dependent oxidoreductase compare
RR42_RS03020 +0.7 1.1 MarR family transcriptional regulator compare
RR42_RS30310 +0.7 1.4 signal transduction protein compare
RR42_RS05375 +0.7 2.6 hemoglobin-like protein compare
RR42_RS08030 +0.7 0.9 hypothetical protein compare
RR42_RS26430 +0.7 1.5 ferredoxin reductase compare
RR42_RS35995 +0.7 1.6 membrane protein compare
RR42_RS14235 +0.6 1.0 hypothetical protein compare
RR42_RS07825 +0.6 2.2 D-amino acid oxidase compare
RR42_RS15755 +0.6 1.7 acetyltransferase compare
RR42_RS09825 +0.6 2.9 hypothetical protein compare
RR42_RS27440 +0.6 2.2 hypothetical protein compare
RR42_RS11550 +0.6 1.5 3-oxoacyl-ACP reductase compare
RR42_RS24520 +0.6 2.8 hypothetical protein compare
RR42_RS27625 +0.6 2.3 TetR family transcriptional regulator compare
RR42_RS07800 +0.6 2.0 IclR family transcriptional regulator compare
RR42_RS12020 +0.6 1.5 GCN5 family acetyltransferase compare
RR42_RS28110 +0.6 2.3 phosphonate ABC transporter ATPase compare
RR42_RS20260 +0.6 1.2 hypothetical protein compare
RR42_RS33175 +0.6 3.0 membrane protein compare
RR42_RS06445 +0.6 2.1 NAD(P)H-quinone oxidoreductase compare
RR42_RS29505 +0.6 1.0 hypothetical protein compare
RR42_RS12305 +0.6 1.0 hypothetical protein compare
RR42_RS01485 +0.6 1.8 phosphonate transporter compare
RR42_RS35715 +0.6 0.9 flagellar basal body rod modification protein FlgD compare
RR42_RS14880 +0.6 1.6 hypothetical protein compare
RR42_RS00510 +0.6 1.5 transcriptional regulator compare
RR42_RS26400 +0.6 2.3 structural protein MipA compare
RR42_RS29000 +0.6 2.4 Crp/Fnr family transcriptional regulator compare
RR42_RS06775 +0.6 3.0 hypothetical protein compare
RR42_RS12590 +0.6 0.8 50S ribosomal protein L9 compare
RR42_RS05965 +0.6 1.4 malonic semialdehyde reductase compare
RR42_RS15330 +0.6 2.7 hypothetical protein compare
RR42_RS31995 +0.6 1.5 flavin reductase compare
RR42_RS27065 +0.6 1.2 hypothetical protein compare
RR42_RS19830 +0.6 1.6 LysR family transcriptional regulator compare
RR42_RS20360 +0.6 1.4 AsnC family transcriptional regulator compare
RR42_RS01210 +0.6 1.7 n-acetyl-gamma-glutamyl-phosphate reductase compare
RR42_RS34525 +0.6 2.1 type VI secretion protein VasK compare
RR42_RS31690 +0.6 2.7 4-oxalocrotonate tautomerase compare
RR42_RS36835 +0.6 1.5 cytochrome P450 compare
RR42_RS37055 +0.6 1.5 hypothetical protein compare
RR42_RS22120 +0.6 3.3 type VI secretion protein compare
RR42_RS35600 +0.6 1.4 hypothetical protein compare
RR42_RS16185 +0.6 2.7 malonyl-CoA decarboxylase compare
RR42_RS01535 +0.6 2.3 3-isopropylmalate dehydratase compare
RR42_RS06935 +0.6 2.0 hypothetical protein compare
RR42_RS35475 +0.6 3.0 thiosulfate sulfurtransferase compare
RR42_RS28295 +0.6 3.2 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data) compare
RR42_RS33855 +0.6 1.6 TetR family transcriptional regulator compare
RR42_RS31830 +0.5 1.2 short-chain dehydrogenase compare
RR42_RS08180 +0.5 0.9 hypothetical protein compare
RR42_RS16565 +0.5 1.0 hypothetical protein compare
RR42_RS23970 +0.5 1.8 hypothetical protein compare
RR42_RS21605 +0.5 1.6 S-adenosylhomocysteine hydrolase compare
RR42_RS16305 +0.5 2.0 hypothetical protein compare
RR42_RS28970 +0.5 1.5 3-oxoacyl-ACP reductase compare
RR42_RS05260 +0.5 2.4 purine permease compare
RR42_RS04675 +0.5 1.8 alkylhydroperoxidase compare
RR42_RS13620 +0.5 0.7 ferredoxin compare
RR42_RS05975 +0.5 2.6 ferredoxin compare
RR42_RS31135 +0.5 1.5 hypothetical protein compare
RR42_RS27940 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS31565 +0.5 2.8 50S ribosomal protein L21 compare
RR42_RS32720 +0.5 2.1 glyoxalase compare
RR42_RS03485 +0.5 1.7 type VI secretion protein compare
RR42_RS10490 +0.5 1.9 DNA-binding protein compare
RR42_RS03505 +0.5 1.6 replication/virulence associated protein compare
RR42_RS36445 +0.5 1.8 acetyl-CoA acetyltransferase compare
RR42_RS20630 +0.5 2.3 transcriptional regulator compare
RR42_RS02065 +0.5 0.7 phosphate starvation-inducible protein PsiF compare
RR42_RS08590 +0.5 1.2 baseplate assembly protein compare
RR42_RS05700 +0.5 3.1 hypothetical protein compare
RR42_RS30815 +0.5 2.8 uracil phosphoribosyltransferase compare
RR42_RS03715 +0.5 1.4 inositol monophosphatase compare
RR42_RS25245 +0.5 2.1 Asp/Glu/hydantoin racemase compare
RR42_RS26080 +0.5 0.6 hypothetical protein compare
RR42_RS35140 +0.5 1.2 2-hydroxylaminobenzoate mutase compare
RR42_RS14640 +0.5 2.0 histidine ammonia-lyase compare
RR42_RS36920 +0.5 0.9 TetR family transcriptional regulator compare
RR42_RS23250 +0.5 1.8 glyoxalase compare
RR42_RS05420 +0.5 2.9 membrane protein compare
RR42_RS18385 +0.5 1.2 hypothetical protein compare
RR42_RS13825 +0.5 1.8 hypothetical protein compare
RR42_RS31870 +0.5 2.5 3-ketosteroid-9-alpha-hydroxylase compare
RR42_RS16640 +0.5 0.7 LysR family transcriptional regulator compare
RR42_RS22880 +0.5 2.0 ABC transporter permease compare
RR42_RS04125 +0.5 1.4 lipoprotein compare
RR42_RS05115 +0.5 1.0 LysR family transcriptional regulator compare
RR42_RS28515 +0.5 2.5 LysR family transcriptional regulator compare
RR42_RS28580 +0.5 2.2 LysR family transcriptional regulator compare
RR42_RS33970 +0.5 1.4 LysR family transcriptional regulator compare
RR42_RS03675 +0.5 2.4 hypothetical protein compare
RR42_RS21925 +0.5 1.6 membrane protein compare
RR42_RS11635 +0.5 2.0 signal transduction protein compare
RR42_RS10815 +0.5 2.2 methionine ABC transporter ATP-binding protein compare
RR42_RS09665 +0.5 2.3 hypothetical protein compare
RR42_RS03695 +0.5 1.8 hypothetical protein compare
RR42_RS07450 +0.5 2.6 ABC transporter permease compare
RR42_RS21410 +0.5 2.9 DNA-binding protein compare
RR42_RS10020 +0.5 1.8 4-methylmuconolactone methylisomerase compare
RR42_RS05130 +0.5 1.1 2-aminomuconate deaminase compare
RR42_RS20880 +0.5 1.5 hypothetical protein compare
RR42_RS36770 +0.5 3.0 hypothetical protein compare
RR42_RS05750 +0.5 0.8 fructose 2,6-bisphosphatase compare
RR42_RS08465 +0.5 1.3 hypothetical protein compare
RR42_RS05305 +0.5 2.4 NADP oxidoreductase compare
RR42_RS01600 +0.5 2.3 methylmalonyl-CoA mutase compare
RR42_RS00100 +0.5 2.2 hypothetical protein compare
RR42_RS26220 +0.5 1.0 citrate lyase subunit beta compare
RR42_RS25840 +0.5 2.7 ArsR family transcriptional regulator compare
RR42_RS01750 +0.5 3.7 hypothetical protein compare
RR42_RS16495 +0.5 1.5 branched-chain amino acid aminotransferase compare
RR42_RS16405 +0.5 2.2 hypothetical protein compare
RR42_RS33070 +0.5 1.5 oxidoreductase compare
RR42_RS10290 +0.5 1.2 hypothetical protein compare
RR42_RS32710 +0.5 1.0 hypothetical protein compare
RR42_RS06415 +0.5 1.7 glyoxalase compare
RR42_RS01740 +0.5 1.7 ATP-dependent protease compare
RR42_RS18950 +0.5 2.8 hypothetical protein compare
RR42_RS17580 +0.5 2.1 spermidine synthase compare
RR42_RS07870 +0.5 1.8 alkyl hydroperoxide reductase compare
RR42_RS22915 +0.5 1.7 ABC transporter permease compare
RR42_RS09965 +0.5 2.5 DNA-binding protein compare
RR42_RS21695 +0.5 1.3 DNA-binding protein compare
RR42_RS03765 +0.5 1.4 formate dehydrogenase compare
RR42_RS18725 +0.5 0.5 hypothetical protein compare
RR42_RS08585 +0.5 1.8 baseplate assembly protein compare
RR42_RS32975 +0.5 0.9 LysR family transcriptional regulator compare
RR42_RS36680 +0.5 1.4 hypothetical protein compare
RR42_RS28265 +0.5 1.6 MFS transporter compare
RR42_RS22790 +0.5 1.1 MmgE/PrpD family protein compare
RR42_RS26620 +0.4 1.7 hypothetical protein compare
RR42_RS20525 +0.4 2.8 LuxR family transcriptional regulator compare
RR42_RS10500 +0.4 2.6 hypothetical protein compare
RR42_RS09575 +0.4 2.0 hypothetical protein compare
RR42_RS02590 +0.4 0.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS03430 +0.4 1.7 SAM-dependent methyltransferase compare
RR42_RS26320 +0.4 1.5 LysR family transcriptional regulator compare
RR42_RS28400 +0.4 0.7 CoA-transferase compare
RR42_RS16370 +0.4 1.2 glutamine ABC transporter ATP-binding protein compare
RR42_RS00990 +0.4 1.4 GntR family transcriptional regulator compare
RR42_RS26395 +0.4 2.5 hemolysin secretion protein D compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in nitrogen source experiments

For nitrogen source D-Alanine across organisms