Experiment set2IT093 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Sodium nitrate 250 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS06885 -3.4 -4.7 rhodanese-like domain-containing protein compare
LRK54_RS00440 -3.4 -6.2 high frequency lysogenization protein HflD compare
LRK54_RS16940 -3.3 -2.3 RNA polymerase sigma factor RpoE compare
LRK54_RS02895 -3.3 -8.9 rhomboid family intramembrane serine protease compare
LRK54_RS13760 -3.2 -7.9 trypsin-like peptidase domain-containing protein compare
LRK54_RS16865 -3.1 -10.1 protein phosphatase 2C domain-containing protein compare
LRK54_RS17505 -3.0 -4.6 preprotein translocase subunit SecG compare
LRK54_RS04585 -3.0 -5.0 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS14695 -3.0 -12.4 rhomboid family intramembrane serine protease compare
LRK54_RS03290 -2.9 -2.0 RIP metalloprotease RseP compare
LRK54_RS14825 -2.9 -5.5 protease HtpX compare
LRK54_RS12865 -2.9 -9.8 HPr(Ser) kinase/phosphatase compare
LRK54_RS14590 -2.9 -6.6 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS16615 -2.9 -2.0 phosphopyruvate hydratase compare
LRK54_RS04720 -2.8 -7.1 phosphoribosylformylglycinamidine synthase compare
LRK54_RS00615 -2.8 -6.3 protease modulator HflC compare
LRK54_RS00675 -2.8 -10.3 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS12855 -2.8 -6.2 PTS fructose transporter subunit IIA compare
LRK54_RS11975 -2.8 -6.1 SLC13 family permease compare
LRK54_RS00620 -2.8 -9.4 FtsH protease activity modulator HflK compare
LRK54_RS06685 -2.8 -13.2 TolC family outer membrane protein compare
LRK54_RS03110 -2.7 -10.2 nucleotidyltransferase family protein compare
LRK54_RS05650 -2.7 -3.3 ABC transporter ATP-binding protein compare
LRK54_RS12860 -2.7 -4.5 RNase adapter RapZ compare
LRK54_RS05655 -2.7 -1.9 ABC transporter permease compare
LRK54_RS16735 -2.7 -15.5 endopeptidase La compare
LRK54_RS06470 -2.7 -10.8 carboxy terminal-processing peptidase compare
LRK54_RS16050 -2.7 -1.7 tetratricopeptide repeat protein compare
LRK54_RS16660 -2.7 -9.6 VTT domain-containing protein compare
LRK54_RS06720 -2.7 -12.9 glycosyltransferase compare
LRK54_RS02325 -2.7 -3.8 SDR family oxidoreductase compare
LRK54_RS05985 -2.7 -1.8 response regulator transcription factor compare
LRK54_RS04350 -2.6 -5.3 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS05415 -2.6 -7.0 TetR/AcrR family transcriptional regulator compare
LRK54_RS06755 -2.6 -18.0 LTA synthase family protein compare
LRK54_RS08760 -2.6 -3.1 transaldolase compare
LRK54_RS10065 -2.6 -4.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS16665 -2.6 -11.6 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS18050 -2.6 -12.8 lipopolysaccharide assembly protein LapB compare
LRK54_RS02855 -2.6 -5.0 type I restriction-modification system subunit M compare
LRK54_RS05440 -2.6 -11.4 hypothetical protein compare
LRK54_RS05630 -2.6 -6.9 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS02445 -2.6 -2.9 membrane protein insertion efficiency factor YidD compare
LRK54_RS05550 -2.5 -2.4 FAD-binding protein compare
LRK54_RS11170 -2.5 -4.2 NADP-dependent malic enzyme compare
LRK54_RS05980 -2.5 -3.8 ATP-binding protein compare
LRK54_RS06155 -2.5 -2.3 cysteine dioxygenase compare
LRK54_RS02535 -2.5 -5.2 50S ribosomal protein L9 compare
LRK54_RS03710 -2.5 -8.6 tetratricopeptide repeat protein compare
LRK54_RS17270 -2.4 -3.7 DNA translocase FtsK compare
LRK54_RS04615 -2.4 -6.0 transcriptional regulator NrdR compare
LRK54_RS00670 -2.4 -4.6 OmpA family protein compare
LRK54_RS02440 -2.4 -2.8 RNA polymerase-binding protein DksA compare
LRK54_RS12595 -2.4 -4.8 (2Fe-2S)-binding protein compare
LRK54_RS01280 -2.4 -2.3 MBL fold metallo-hydrolase compare
LRK54_RS11175 -2.3 -8.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS12185 -2.3 -14.1 penicillin-binding protein activator compare
LRK54_RS05640 -2.3 -9.4 GDP-mannose 4,6-dehydratase compare
LRK54_RS03675 -2.3 -2.7 redox-regulated ATPase YchF compare
LRK54_RS02275 -2.3 -5.5 enoyl-CoA hydratase-related protein compare
LRK54_RS16740 -2.3 -3.8 HU family DNA-binding protein compare
LRK54_RS12945 -2.3 -8.6 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS10330 -2.3 -3.1 3-isopropylmalate dehydratase small subunit compare
LRK54_RS02090 -2.3 -14.7 NAD-glutamate dehydrogenase compare
LRK54_RS03125 -2.2 -2.2 preprotein translocase subunit YajC compare
LRK54_RS03895 -2.2 -13.1 lipopolysaccharide biosynthesis protein compare
LRK54_RS12010 -2.2 -8.4 response regulator transcription factor compare
LRK54_RS15035 -2.2 -7.2 M48 family metalloprotease compare
LRK54_RS09155 -2.2 -4.4 SPOR domain-containing protein compare
LRK54_RS00680 -2.2 -10.6 TerC family protein compare
LRK54_RS02945 -2.1 -9.4 response regulator compare
LRK54_RS16755 -2.1 -3.8 SurA N-terminal domain-containing protein compare
LRK54_RS02435 -2.1 -16.7 TonB-dependent siderophore receptor compare
LRK54_RS07085 -2.1 -15.6 heme o synthase compare
LRK54_RS09805 -2.1 -6.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS00085 -2.1 -2.0 tetratricopeptide repeat protein compare
LRK54_RS05785 -2.1 -7.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS16950 -2.1 -14.4 Do family serine endopeptidase compare
LRK54_RS10855 -2.1 -4.5 protein-export chaperone SecB compare
LRK54_RS06675 -2.1 -8.6 TetR/AcrR family transcriptional regulator compare
LRK54_RS08930 -2.1 -5.7 XRE family transcriptional regulator compare
LRK54_RS01685 -2.0 -11.7 tryptophan synthase subunit beta compare
LRK54_RS11565 -2.0 -4.3 anthranilate phosphoribosyltransferase compare
LRK54_RS16730 -2.0 -1.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS10925 -2.0 -1.7 cell division ATP-binding protein FtsE compare
LRK54_RS16720 -2.0 -7.3 trigger factor compare
LRK54_RS10150 -2.0 -2.3 DNA topoisomerase I compare
LRK54_RS12190 -2.0 -6.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS10355 -2.0 -3.0 threonine synthase compare
LRK54_RS11285 -2.0 -6.1 ABC transporter ATP-binding protein compare
LRK54_RS02495 -2.0 -6.0 50S ribosomal protein L19 compare
LRK54_RS01680 -2.0 -6.8 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS15165 -1.9 -4.8 enoyl-CoA hydratase-related protein compare
LRK54_RS11375 -1.9 -7.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS05635 -1.9 -9.3 dehydrogenase compare
LRK54_RS11290 -1.9 -2.2 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS07120 -1.9 -15.5 cytochrome c oxidase subunit I compare
LRK54_RS16810 -1.9 -2.5 hypothetical protein compare
LRK54_RS14460 -1.9 -8.8 septum site-determining protein MinD compare
LRK54_RS02460 -1.9 -9.2 phosphoglycolate phosphatase compare
LRK54_RS11385 -1.9 -3.7 co-chaperone DjlA compare
LRK54_RS12670 -1.9 -8.7 glycosyltransferase compare
LRK54_RS03930 -1.9 -10.4 glycosyltransferase family 2 protein compare
LRK54_RS00805 -1.9 -3.6 segregation/condensation protein A compare
LRK54_RS12015 -1.9 -12.6 HAMP domain-containing histidine kinase compare
LRK54_RS00695 -1.9 -5.2 methylisocitrate lyase compare
LRK54_RS12305 -1.9 -10.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS10950 -1.9 -11.3 S41 family peptidase compare
LRK54_RS04630 -1.9 -1.3 energy-dependent translational throttle protein EttA compare
LRK54_RS02185 -1.9 -4.7 exodeoxyribonuclease V subunit alpha compare
LRK54_RS09110 -1.9 -14.4 phospholipase D family protein compare
LRK54_RS10185 -1.9 -13.9 RDD family protein compare
LRK54_RS04050 -1.8 -8.6 glycoside hydrolase compare
LRK54_RS06820 -1.8 -3.4 Fis family transcriptional regulator compare
LRK54_RS12460 -1.8 -2.7 hypothetical protein compare
LRK54_RS13780 -1.8 -5.9 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS00305 -1.8 -10.4 asparagine synthase B compare
LRK54_RS00080 -1.8 -10.4 helix-turn-helix domain-containing protein compare
LRK54_RS00690 -1.8 -10.5 2-methylcitrate synthase compare
LRK54_RS05495 -1.8 -5.3 met regulon transcriptional regulator MetJ compare
LRK54_RS02950 -1.8 -11.9 sensor histidine kinase compare
LRK54_RS05610 -1.8 -8.4 GtrA family protein compare
LRK54_RS11570 -1.8 -4.0 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS00815 -1.8 -6.2 pseudouridine synthase compare
LRK54_RS12295 -1.8 -3.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS10955 -1.7 -11.7 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS09945 -1.7 -5.9 class I SAM-dependent methyltransferase compare
LRK54_RS00405 -1.7 -5.8 FHA domain-containing protein compare
LRK54_RS11055 -1.7 -10.3 lipid-binding SYLF domain-containing protein compare
LRK54_RS05740 -1.7 -6.5 phosphoglycerate kinase compare
LRK54_RS18055 -1.7 -5.0 glycosyltransferase family 4 protein compare
LRK54_RS00345 -1.7 -3.4 TraB/GumN family protein compare
LRK54_RS09000 -1.7 -10.2 HAMP domain-containing histidine kinase compare
LRK54_RS10930 -1.7 -10.6 permease-like cell division protein FtsX compare
LRK54_RS05645 -1.7 -12.2 glycosyltransferase compare
LRK54_RS05540 -1.7 -4.3 glycosyltransferase family 2 protein compare
LRK54_RS02180 -1.7 -7.2 UvrD-helicase domain-containing protein compare
LRK54_RS08670 -1.6 -8.4 LacI family transcriptional regulator compare
LRK54_RS05615 -1.6 -10.0 hypothetical protein compare
LRK54_RS15935 -1.6 -8.1 rRNA pseudouridine synthase compare
LRK54_RS00935 -1.6 -8.8 sulfite exporter TauE/SafE family protein compare
LRK54_RS16155 -1.6 -1.8 folate-binding protein compare
LRK54_RS02380 -1.5 -5.0 argininosuccinate lyase compare
LRK54_RS06785 -1.5 -2.0 protein-disulfide reductase DsbD compare
LRK54_RS04140 -1.5 -5.6 inositol-phosphate phosphatase compare
LRK54_RS13830 -1.5 -6.9 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS14800 -1.5 -0.9 cytochrome c compare
LRK54_RS03925 -1.5 -9.3 glycosyltransferase family 4 protein compare
LRK54_RS13800 -1.5 -10.3 DUF1631 domain-containing protein compare
LRK54_RS15105 -1.5 -5.6 polynucleotide adenylyltransferase PcnB compare
LRK54_RS00420 -1.5 -11.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS11830 -1.5 -12.0 penicillin-binding protein 1A compare
LRK54_RS05535 -1.5 -5.9 glycosyltransferase family 2 protein compare
LRK54_RS16930 -1.5 -7.4 hypothetical protein compare
LRK54_RS05670 -1.4 -5.1 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS16955 -1.4 -9.4 translation elongation factor 4 compare
LRK54_RS06865 -1.4 -6.0 uroporphyrinogen-III C-methyltransferase compare
LRK54_RS18060 -1.4 -5.2 polysaccharide biosynthesis protein compare
LRK54_RS03405 -1.4 -6.8 ribonuclease G compare
LRK54_RS02970 -1.4 -3.7 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS03105 -1.4 -8.7 phosphotransferase compare
LRK54_RS06490 -1.4 -9.3 D-alanyl-D-alanine carboxypeptidase compare
LRK54_RS04625 -1.4 -8.3 serine hydroxymethyltransferase compare
LRK54_RS04710 -1.4 -3.5 glycosyltransferase family 2 protein compare
LRK54_RS15265 -1.3 -7.1 acetyl-CoA C-acyltransferase compare
LRK54_RS13885 -1.3 -2.0 DUF2249 domain-containing protein compare
LRK54_RS03200 -1.3 -5.7 integration host factor subunit alpha compare
LRK54_RS16875 -1.3 -10.3 kinase/pyrophosphorylase compare
LRK54_RS01585 -1.3 -5.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS06610 -1.3 -9.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS02960 -1.3 -8.8 ABC transporter permease compare
LRK54_RS01020 -1.3 -6.5 pha synthase subunit protein compare
LRK54_RS16650 -1.3 -5.7 5'/3'-nucleotidase SurE compare
LRK54_RS02285 -1.3 -8.4 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS06495 -1.3 -8.5 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS06515 -1.3 -4.1 rod shape-determining protein MreD compare
LRK54_RS15020 -1.3 -9.7 polyphosphate kinase 1 compare
LRK54_RS14465 -1.3 -3.6 septum site-determining protein MinC compare
LRK54_RS16655 -1.3 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS00425 -1.3 -7.6 ATP-dependent Clp protease adapter ClpS compare
LRK54_RS02175 -1.3 -7.1 exodeoxyribonuclease V subunit gamma compare
LRK54_RS17160 -1.2 -2.0 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS12300 -1.2 -3.8 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS02925 -1.2 -6.0 GNAT family N-acetyltransferase compare
LRK54_RS01285 -1.2 -4.7 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS12580 -1.2 -3.0 hypothetical protein compare
LRK54_RS09780 -1.2 -8.0 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK54_RS13910 -1.2 -3.8 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS01015 -1.2 -10.0 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK54_RS12200 -1.2 -5.3 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS08585 -1.2 -10.5 RimK family alpha-L-glutamate ligase compare
LRK54_RS16600 -1.2 -6.5 aminopeptidase P family protein compare
LRK54_RS12830 -1.2 -4.9 YeiH family protein compare
LRK54_RS01410 -1.2 -8.8 ABC transporter ATP-binding protein/permease compare
LRK54_RS05775 -1.2 -6.1 pyruvate kinase compare
LRK54_RS09775 -1.2 -7.7 beta-ketoacyl synthase chain length factor compare
LRK54_RS07090 -1.2 -8.5 COX15/CtaA family protein compare
LRK54_RS16935 -1.2 -8.7 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS15325 -1.2 -0.9 hypothetical protein compare
LRK54_RS07735 -1.2 -6.2 metalloregulator ArsR/SmtB family transcription factor compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium nitrate in Rhodanobacter denitrificans FW104-10B01

For stress Sodium nitrate across organisms