Experiment set2IT093 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Sodium nitrate 250 mM

Group: stress
Media: R2A + Sodium nitrate (250 mM)
Culturing: rhodanobacter_10B01_ML12, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 30 (C), shaken=700 rpm
By: Hans on 2/27/21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 3 genes in this experiment

For stress Sodium nitrate in Rhodanobacter denitrificans FW104-10B01

For stress Sodium nitrate across organisms

SEED Subsystems

Subsystem #Specific
Cysteine Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
gondoate biosynthesis (anaerobic) 4 4 1
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 12 9 3
fatty acid biosynthesis initiation (mitochondria) 4 2 1
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 8 2
oleate biosynthesis IV (anaerobic) 14 13 3
palmitate biosynthesis III 29 21 6
superpathway of fatty acid biosynthesis initiation 5 4 1
fatty acid elongation -- saturated 5 4 1
tetradecanoate biosynthesis (mitochondria) 25 17 5
palmitate biosynthesis II (type II fatty acid synthase) 31 29 6
superpathway of fatty acid biosynthesis I (E. coli) 16 14 3
8-amino-7-oxononanoate biosynthesis I 11 10 2
superpathway of fatty acids biosynthesis (E. coli) 53 49 9
(5Z)-dodecenoate biosynthesis I 6 6 1
stearate biosynthesis II (bacteria and plants) 6 5 1
(5Z)-dodecenoate biosynthesis II 6 5 1
stearate biosynthesis IV 6 4 1
superpathway of fatty acid biosynthesis II (plant) 43 38 7
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 18 3
biotin biosynthesis I 15 14 2
streptorubin B biosynthesis 34 20 4
mycolate biosynthesis 205 20 4
superpathway of mycolate biosynthesis 239 21 4