Experiment set2IT093 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xantho_MME_glucose_dropout_LTH

200 most important genes:

  gene name fitness t score description  
Xcc-8004.5192.1 -5.8 -8.9 hypothetical protein compare
Xcc-8004.1372.1 -5.6 -5.4 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4481.1 -5.5 -6.5 hypothetical protein compare
Xcc-8004.3537.1 -5.3 -5.2 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.1615.1 -5.1 -3.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.271.1 -5.1 -4.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1049.1 -4.7 -8.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.1053.1 -4.7 -7.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.2947.1 -4.5 -7.6 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.1964.1 -4.3 -12.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.5193.1 -4.3 -21.6 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.2945.1 -4.2 -4.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.2944.1 -4.1 -8.4 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.4620.1 -4.1 -11.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2946.1 -4.1 -6.2 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.622.1 -4.0 -7.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2948.1 -3.9 -7.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.2943.1 -3.8 -6.3 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.1010.1 -3.7 -9.2 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.621.1 -3.5 -4.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.1962.1 -3.4 -5.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.1489.1 -3.4 -16.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I compare
Xcc-8004.1616.1 -3.3 -2.3 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.2086.1 -3.3 -2.9 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.1050.1 -3.2 -3.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.2942.1 -3.0 -5.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
Xcc-8004.657.1 -2.9 -7.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.659.1 -2.8 -4.7 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.130.1 -2.8 -9.4 hypothetical protein compare
Xcc-8004.2450.1 -2.7 -15.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.1710.1 -2.5 -4.8 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2447.1 -2.5 -11.7 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.1056.1 -2.5 -3.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.1359.1 -2.4 -7.5 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4364.1 -2.4 -7.3 Cell division protein MraZ compare
Xcc-8004.623.1 -2.4 -2.9 Phosphoserine phosphatase compare
Xcc-8004.2406.1 -2.3 -10.0 Manganese transport protein MntH compare
Xcc-8004.4398.1 -2.3 -8.6 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.2449.1 -2.3 -5.8 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.2949.1 -2.3 -2.6 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.3283.1 -2.3 -9.0 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.2259.1 -2.2 -5.5 PhbF compare
Xcc-8004.4112.1 -2.2 -5.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.846.1 -2.2 -4.1 Protein of unknown function DUF484 compare
Xcc-8004.608.1 -2.2 -9.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.1873.1 -2.2 -3.0 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.2337.1 -2.1 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.2012.1 -2.1 -8.2 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.3281.1 -2.1 -5.3 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.2011.1 -2.0 -2.8 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.270.1 -2.0 -5.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.1236.1 -2.0 -6.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.2931.1 -1.9 -4.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.505.1 -1.9 -8.8 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.3201.1 -1.9 -2.7 hypothetical protein compare
Xcc-8004.914.1 -1.8 -6.8 tail-specific protease compare
Xcc-8004.3576.1 -1.8 -7.6 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.4948.1 -1.8 -2.6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.3875.1 -1.8 -2.3 FIG01212144: hypothetical protein compare
Xcc-8004.1955.1 -1.8 -5.0 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1967.1 -1.8 -6.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.1241.1 -1.7 -5.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.1196.1 -1.7 -6.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.1568.1 -1.6 -2.9 Glycine cleavage system H protein compare
Xcc-8004.4752.1 -1.5 -3.0 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.5020.1 -1.5 -5.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.2079.1 -1.5 -3.6 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.2911.1 -1.5 -1.6 Transcription elongation factor GreA compare
Xcc-8004.3346.1 -1.5 -3.6 hypothetical protein compare
Xcc-8004.2387.1 -1.5 -2.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.4439.1 -1.5 -9.0 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.3313.1 -1.5 -3.0 LSU ribosomal protein L9p compare
Xcc-8004.432.1 -1.4 -2.8 hypothetical protein compare
Xcc-8004.2215.1 -1.4 -1.4 hypothetical protein compare
Xcc-8004.618.1 -1.4 -3.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.3325.1 -1.4 -3.6 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) compare
Xcc-8004.4111.1 -1.3 -4.7 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54) compare
Xcc-8004.1676.1 -1.3 -6.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.3722.1 -1.3 -1.4 HrpB7 protein compare
Xcc-8004.2935.1 -1.3 -8.4 Amino acid transporters compare
Xcc-8004.3815.1 -1.2 -2.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.2217.1 -1.2 -3.1 FIG01209779: hypothetical protein compare
Xcc-8004.1914.1 -1.2 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.2165.1 -1.2 -8.5 Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) compare
Xcc-8004.4985.1 -1.2 -6.9 Arginase (EC 3.5.3.1) compare
Xcc-8004.2009.1 -1.2 -6.3 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Xcc-8004.601.1 -1.2 -5.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1839.1 -1.2 -1.7 FIG01210863: hypothetical protein compare
Xcc-8004.1334.1 -1.2 -1.9 hypothetical protein compare
Xcc-8004.4732.1 -1.2 -1.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.3794.1 -1.2 -2.0 Mobile element protein compare
Xcc-8004.934.1 -1.1 -2.5 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.1436.1 -1.1 -1.3 Holliday junction DNA helicase RuvA compare
Xcc-8004.4510.1 -1.1 -1.5 ATP binding component of ABC-transporter compare
Xcc-8004.2936.1 -1.1 -7.0 Amino acid transporters compare
Xcc-8004.2561.1 -1.1 -5.4 FIG01213638: hypothetical protein compare
Xcc-8004.2754.1 -1.1 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.2081.1 -1.1 -2.3 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.1657.1 -1.1 -1.3 PTS system, mannose-specific IIA component compare
Xcc-8004.1566.1 -1.1 -2.0 Putative activity regulator of membrane protease YbbK compare
Xcc-8004.337.1 -1.1 -2.6 ATPase, AFG1 family compare
Xcc-8004.2922.1 -1.1 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.3208.1 -1.1 -1.8 Methyltransferase type 12 compare
Xcc-8004.3979.1 -1.0 -5.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3978.1 -1.0 -2.2 FIG01211989: hypothetical protein compare
Xcc-8004.3130.1 -1.0 -4.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.3492.1 -1.0 -1.1 FIG01211425: hypothetical protein compare
Xcc-8004.3728.1 -1.0 -1.0 hypothetical protein compare
Xcc-8004.1361.1 -1.0 -1.1 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.5205.1 -1.0 -3.6 FIG01210461: hypothetical protein compare
Xcc-8004.4046.1 -1.0 -6.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4210.1 -1.0 -4.1 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.4539.1 -1.0 -5.3 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.1249.1 -1.0 -3.4 Transcriptional regulator compare
Xcc-8004.5352.1 -0.9 -1.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.4523.1 -0.9 -1.8 Type II secretion system protein-like protein compare
Xcc-8004.4200.1 -0.9 -1.9 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.4788.1 -0.9 -1.2 FIG01210406: hypothetical protein compare
Xcc-8004.3433.1 -0.9 -4.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.1790.1 -0.9 -2.6 Zinc uptake regulation protein ZUR compare
Xcc-8004.4073.1 -0.9 -5.9 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.1132.1 -0.9 -1.2 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.924.1 -0.9 -2.1 FIG01200701: possible membrane protein compare
Xcc-8004.4199.1 -0.9 -5.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Xcc-8004.1943.1 -0.9 -2.5 FIG01211831: hypothetical protein compare
Xcc-8004.1693.1 -0.9 -4.0 Iron-uptake factor PiuC compare
Xcc-8004.2213.1 -0.9 -1.7 FIG01210598: hypothetical protein compare
Xcc-8004.1523.1 -0.9 -5.9 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) compare
Xcc-8004.4082.1 -0.9 -6.4 L-threonine 3-dehydrogenase (EC 1.1.1.103) compare
Xcc-8004.3653.1 -0.9 -1.3 FIG01212122: hypothetical protein compare
Xcc-8004.3582.1 -0.9 -1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1838.1 -0.9 -1.7 FIG002958: hypothetical protein compare
Xcc-8004.5280.1 -0.8 -3.0 hypothetical protein compare
Xcc-8004.2579.1 -0.8 -2.1 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.3230.1 -0.8 -2.0 Phage DNA invertase compare
Xcc-8004.1082.1 -0.8 -1.7 FIG01211203: hypothetical protein compare
Xcc-8004.694.1 -0.8 -2.5 hypothetical protein compare
Xcc-8004.2314.1 -0.8 -4.1 FIG01209975: hypothetical protein compare
Xcc-8004.1158.1 -0.8 -1.9 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Xcc-8004.4049.1 -0.8 -2.9 Cell division trigger factor (EC 5.2.1.8) compare
Xcc-8004.5343.1 -0.8 -4.0 hypothetical protein compare
Xcc-8004.3395.1 -0.8 -1.7 Transcriptional regulator, GntR family compare
Xcc-8004.3103.1 -0.7 -1.0 hypothetical protein compare
Xcc-8004.410.1 -0.7 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2898.1 -0.7 -4.1 Sensory/regulatory protein rpfC (EC 2.7.3.-) compare
Xcc-8004.3374.1 -0.7 -2.4 hypothetical protein compare
Xcc-8004.4824.1 -0.7 -4.8 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1859.1 -0.7 -1.9 Transcriptional regulator compare
Xcc-8004.2879.1 -0.7 -0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.3253.1 -0.7 -2.4 IncQ plasmid conjugative transfer protein TraG compare
Xcc-8004.4884.1 -0.7 -1.6 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.1058.1 -0.7 -1.5 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.3327.1 -0.7 -3.2 Kynureninase (EC 3.7.1.3) compare
Xcc-8004.495.1 -0.7 -3.0 EpiH/GdmH-related protein compare
Xcc-8004.4507.1 -0.7 -3.6 Glycosyltransferase compare
Xcc-8004.251.1 -0.7 -3.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Xcc-8004.3462.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.3590.1 -0.7 -1.6 FIG01211013: hypothetical protein compare
Xcc-8004.3647.1 -0.7 -2.7 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.5132.1 -0.7 -3.1 Heavy metal RND efflux outer membrane protein, CzcC family compare
Xcc-8004.2356.1 -0.7 -2.2 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.3816.1 -0.7 -3.4 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.1818.1 -0.7 -1.5 FIG00554193: hypothetical protein compare
Xcc-8004.1009.1 -0.7 -2.0 Lysophospholipase L1 and related esterases compare
Xcc-8004.1768.1 -0.7 -1.3 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.805.1 -0.7 -1.6 Zinc transport protein ZntB compare
Xcc-8004.2713.1 -0.7 -0.7 Nitrate/nitrite transporter compare
Xcc-8004.4442.1 -0.7 -1.5 FIG01212138: hypothetical protein compare
Xcc-8004.2297.1 -0.7 -2.4 FIG01210827: hypothetical protein compare
Xcc-8004.1618.1 -0.7 -2.5 FIG006163: hypothetical protein compare
Xcc-8004.2105.1 -0.7 -2.7 FIG01210123: hypothetical protein compare
Xcc-8004.4743.1 -0.6 -2.6 Peptide deformylase (EC 3.5.1.88) compare
Xcc-8004.3630.1 -0.6 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.2632.1 -0.6 -1.6 Minor coat protein compare
Xcc-8004.3324.1 -0.6 -2.1 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.205.1 -0.6 -4.8 Ribose operon repressor compare
Xcc-8004.2950.1 -0.6 -1.3 His repressor compare
Xcc-8004.573.1 -0.6 -4.5 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.3054.1 -0.6 -0.8 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4530.1 -0.6 -2.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.1336.1 -0.6 -2.9 two-component system sensor protein compare
Xcc-8004.2866.1 -0.6 -2.3 hypothetical protein compare
Xcc-8004.1395.1 -0.6 -2.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Xcc-8004.3188.1 -0.6 -1.7 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE compare
Xcc-8004.1064.1 -0.6 -1.8 hypothetical protein compare
Xcc-8004.1848.1 -0.6 -1.6 Ribonuclease E inhibitor RraA compare
Xcc-8004.2357.1 -0.6 -1.7 Segregation and condensation protein B compare
Xcc-8004.2673.1 -0.6 -1.7 FIG01211365: hypothetical protein compare
Xcc-8004.787.1 -0.6 -0.9 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.1792.1 -0.6 -2.4 Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family compare
Xcc-8004.4982.1 -0.6 -1.6 Protein yjbJ compare
Xcc-8004.2987.1 -0.6 -2.3 hypothetical protein compare
Xcc-8004.602.1 -0.6 -1.8 DnaJ related chaperone compare
Xcc-8004.4653.1 -0.6 -4.6 amino acid transporter compare
Xcc-8004.5268.1 -0.6 -1.3 Mobile element protein compare
Xcc-8004.4814.1 -0.6 -1.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.1881.1 -0.6 -3.8 FIG005080: Possible exported protein compare
Xcc-8004.3883.1 -0.6 -2.4 Oxidoreductase, aldo/keto reductase family compare
Xcc-8004.951.1 -0.6 -1.2 General secretion pathway protein M compare
Xcc-8004.1744.1 -0.6 -2.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in xantho_mme_glucose_dropout_lth experiments