Experiment set2IT093 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 5g/L bicarb, 40 psi H2CO2

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04595 -6.4 -2.7 hypothetical protein compare
MMJJ_RS04040 -6.2 -5.2 prefoldin subunit beta compare
MMJJ_RS04485 -5.9 -6.8 riboflavin synthase compare
MMJJ_RS06000 -5.5 -2.5 cation:proton antiporter subunit C compare
MMJJ_RS09135 -5.5 -8.3 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS08575 -5.4 -2.3 hypothetical protein compare
MMJJ_RS02035 -5.4 -5.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS08870 -5.3 -0.9 2-isopropylmalate synthase compare
MMJJ_RS06260 -5.3 -5.7 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS05535 -5.2 -9.4 hypothetical protein compare
MMJJ_RS03540 -5.2 -6.1 TIGR00289 family protein compare
MMJJ_RS04475 -5.2 -2.5 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS03055 -5.2 -1.9 hypothetical protein compare
MMJJ_RS00645 -5.2 -9.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS06265 -5.1 -10.4 8-amino-7-oxononanoate synthase compare
MMJJ_RS03490 -5.1 -1.6 ribonuclease VapC compare
MMJJ_RS06915 -5.0 -16.2 helix-turn-helix domain-containing protein compare
MMJJ_RS07955 -5.0 -11.1 ThiF family adenylyltransferase compare
MMJJ_RS07160 -4.9 -20.5 M20 family metallo-hydrolase compare
MMJJ_RS00580 -4.9 -1.3 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS04755 -4.9 -11.3 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS03170 -4.8 -9.1 DUF5612 domain-containing protein compare
MMJJ_RS03895 -4.8 -2.0 hydrogenase expression/formation protein HypE compare
MMJJ_RS03115 -4.8 -3.8 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS07360 -4.7 -1.3 TIGR00269 family protein compare
MMJJ_RS04200 -4.7 -3.1 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS04800 -4.7 -3.2 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08810 -4.7 -0.7 DUF4040 domain-containing protein compare
MMJJ_RS05375 -4.6 -14.0 radical SAM protein compare
MMJJ_RS04980 -4.6 -2.6 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS06600 -4.5 -1.6 DUF555 domain-containing protein compare
MMJJ_RS06375 -4.5 -2.2 UbiX family flavin prenyltransferase compare
MMJJ_RS07720 -4.5 -1.4 UPF0058 family protein compare
MMJJ_RS01810 -4.5 -1.2 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06270 -4.5 -5.4 dethiobiotin synthase compare
MMJJ_RS00570 -4.5 -1.2 ribonuclease P compare
MMJJ_RS06025 -4.5 -16.0 4Fe-4S binding protein compare
MMJJ_RS03765 -4.5 -5.8 hypothetical protein compare
MMJJ_RS06010 -4.5 -4.6 hypothetical protein compare
MMJJ_RS06860 -4.5 -2.8 hypothetical protein compare
MMJJ_RS07505 -4.4 -0.7 DNA-directed RNA polymerase subunit K compare
MMJJ_RS03620 -4.4 -3.8 DUF2097 domain-containing protein compare
MMJJ_RS02045 -4.4 -1.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS04150 -4.4 -1.6 DUF5379 domain-containing protein compare
MMJJ_RS05595 -4.4 -1.7 hypothetical protein compare
MMJJ_RS04145 -4.4 -8.9 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS06030 -4.4 -3.9 4Fe-4S binding protein compare
MMJJ_RS02040 -4.4 -1.6 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS08035 -4.4 -7.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS03230 -4.4 -2.2 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS04760 -4.4 -18.5 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS05770 -4.4 -1.6 flagellar protein D compare
MMJJ_RS04685 -4.4 -4.2 carbamoyltransferase HypF compare
MMJJ_RS09190 -4.3 -1.2 tryptophan synthase subunit beta compare
MMJJ_RS06015 -4.3 -9.2 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS07245 -4.3 -2.7 amidohydrolase family protein compare
MMJJ_RS08625 -4.3 -3.0 magnesium/cobalt transporter CorA compare
MMJJ_RS02200 -4.3 -7.1 chorismate pyruvate-lyase family protein compare
MMJJ_RS07455 -4.3 -3.8 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS01960 -4.3 -7.1 glycosyltransferase family 2 protein compare
MMJJ_RS07950 -4.2 -1.8 4Fe-4S binding protein compare
MMJJ_RS05170 -4.2 -13.4 Nif3-like dinuclear metal center hexameric protein compare
MMJJ_RS04565 -4.2 -2.5 sirohydrochlorin nickelochelatase compare
MMJJ_RS07980 -4.2 -12.0 biotin synthase BioB compare
MMJJ_RS03240 -4.2 -2.1 histone family protein compare
MMJJ_RS00285 -4.2 -15.6 UPF0254 family protein compare
MMJJ_RS08405 -4.1 -11.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03295 -4.1 -13.0 PHP domain-containing protein compare
MMJJ_RS02090 -4.1 -2.5 tyramine--L-glutamate ligase compare
MMJJ_RS05160 -4.1 -2.6 RNA-binding protein compare
MMJJ_RS00600 -4.1 -1.6 hydroxymethylbilane synthase compare
MMJJ_RS03630 -4.1 -11.4 AMP phosphorylase compare
MMJJ_RS01350 -4.1 -4.8 sodium:proton antiporter compare
MMJJ_RS00995 -4.1 -7.4 TetR/AcrR family transcriptional regulator compare
MMJJ_RS06155 -4.1 -3.5 phosphatidylglycerophosphatase A compare
MMJJ_RS08925 -4.1 -10.0 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07430 -4.0 -2.3 ribonuclease VapC compare
MMJJ_RS08020 -4.0 -8.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08080 -4.0 -8.8 TIGR00300 family protein compare
MMJJ_RS03930 -4.0 -13.1 hypothetical protein compare
MMJJ_RS04995 -4.0 -2.5 Tfx family DNA-binding protein compare
MMJJ_RS01975 -4.0 -8.9 diphthine synthase compare
MMJJ_RS01935 -4.0 -2.0 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06855 -4.0 -1.1 DUF2104 domain-containing protein compare
MMJJ_RS07725 -4.0 -2.5 DNA primase DnaG compare
MMJJ_RS06510 -4.0 -1.6 LL-diaminopimelate aminotransferase compare
MMJJ_RS04155 -4.0 -2.7 hypothetical protein compare
MMJJ_RS00370 -3.9 -1.2 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS00205 -3.9 -4.7 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS06750 -3.9 -1.4 homoaconitase large subunit compare
MMJJ_RS00450 -3.9 -1.2 DUF126 domain-containing protein compare
MMJJ_RS07375 -3.9 -7.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS05065 -3.9 -3.0 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS04935 -3.8 -5.2 4Fe-4S binding protein compare
MMJJ_RS02205 -3.8 -16.1 hypothetical protein compare
MMJJ_RS08500 -3.8 -5.6 L-sulfolactate dehydrogenase compare
MMJJ_RS07005 -3.8 -3.8 transcription factor S compare
MMJJ_RS03965 -3.8 -1.0 DNA-directed RNA polymerase subunit L compare
MMJJ_RS09055 -3.8 -8.4 NFACT family protein compare
MMJJ_RS04050 -3.8 -1.0 dihydroneopterin aldolase family protein compare
MMJJ_RS03270 -3.8 -1.2 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS04195 -3.8 -10.0 XTP/dITP diphosphatase compare
MMJJ_RS04970 -3.8 -1.2 DUF655 domain-containing protein compare
MMJJ_RS05575 -3.7 -2.6 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06040 -3.7 -1.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03060 -3.7 -1.6 methanogenesis marker 7 protein compare
MMJJ_RS01880 -3.7 -1.6 RlmE family RNA methyltransferase compare
MMJJ_RS06935 -3.7 -9.2 GTP-binding protein compare
MMJJ_RS06805 -3.7 -1.4 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS00265 -3.7 -5.6 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS08025 -3.7 -4.7 hypothetical protein compare
MMJJ_RS07265 -3.6 -11.2 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS00270 -3.6 -1.6 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS04700 -3.6 -4.8 deoxyhypusine synthase compare
MMJJ_RS03760 -3.6 -1.7 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS05360 -3.6 -5.7 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS06715 -3.6 -9.2 lactaldehyde dehydrogenase compare
MMJJ_RS03150 -3.6 -5.4 2-phospho-L-lactate transferase compare
MMJJ_RS06930 -3.6 -1.4 type II methionyl aminopeptidase compare
MMJJ_RS03815 -3.6 -1.1 nascent polypeptide-associated complex protein compare
MMJJ_RS08660 -3.6 -1.7 acetylornithine transaminase compare
MMJJ_RS03875 -3.6 -2.4 CBS domain-containing protein compare
MMJJ_RS04730 -3.5 -1.5 tyrosine decarboxylase MfnA compare
MMJJ_RS00355 -3.5 -1.5 ribonuclease P protein component 4 compare
MMJJ_RS06255 -3.5 -4.8 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS08650 -3.5 -13.7 TfuA-like protein compare
MMJJ_RS07470 -3.5 -1.1 50S ribosome-binding GTPase compare
MMJJ_RS04750 -3.5 -8.7 5,10-methenyltetrahydromethanopterin hydrogenase compare
MMJJ_RS09130 -3.5 -1.1 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS00275 -3.5 -1.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06395 -3.5 -12.1 sugar phosphate isomerase/epimerase compare
MMJJ_RS08535 -3.5 -2.1 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS08840 -3.5 -2.0 calcium/sodium antiporter compare
MMJJ_RS01690 -3.5 -1.7 methanogenesis marker 12 protein compare
MMJJ_RS07405 -3.5 -3.3 histone family protein compare
MMJJ_RS00560 -3.5 -2.9 homoisocitrate dehydrogenase compare
MMJJ_RS06625 -3.5 -1.1 pyruvate synthase subunit PorB compare
MMJJ_RS08450 -3.5 -12.5 undecaprenyl-diphosphate phosphatase compare
MMJJ_RS04650 -3.5 -3.4 nitrogenase iron protein compare
MMJJ_RS08850 -3.5 -1.3 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS03110 -3.5 -2.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS03200 -3.5 -1.2 uroporphyrinogen-III synthase compare
MMJJ_RS06660 -3.5 -7.3 DUF1188 domain-containing protein compare
MMJJ_RS08825 -3.5 -4.1 hypothetical protein compare
MMJJ_RS06005 -3.4 -7.7 energy conserving hydrogenase EhbF compare
MMJJ_RS07345 -3.4 -6.9 homocysteine biosynthesis protein compare
MMJJ_RS06165 -3.4 -12.4 archaeosine synthase subunit alpha compare
MMJJ_RS06695 -3.4 -2.0 amidohydrolase compare
MMJJ_RS05650 -3.4 -1.5 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07155 -3.4 -9.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS05445 -3.4 -1.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03995 -3.4 -4.8 PHP domain-containing protein compare
MMJJ_RS08095 -3.4 -1.9 cobyric acid synthase CobQ compare
MMJJ_RS04045 -3.4 -9.0 DHH family phosphoesterase compare
MMJJ_RS00195 -3.4 -1.7 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS06910 -3.4 -1.3 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03615 -3.4 -1.4 cobalt-precorrin-8 methylmutase compare
MMJJ_RS03670 -3.4 -1.9 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS00425 -3.4 -3.1 hypothetical protein compare
MMJJ_RS03005 -3.3 -1.7 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03880 -3.3 -12.2 TraB/GumN family protein compare
MMJJ_RS01750 -3.3 -1.8 ferrous iron transport protein A compare
MMJJ_RS02145 -3.3 -9.0 class I SAM-dependent methyltransferase compare
MMJJ_RS05810 -3.3 -2.3 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS03225 -3.3 -1.3 4Fe-4S binding protein compare
MMJJ_RS05655 -3.3 -8.2 HisA/HisF family protein compare
MMJJ_RS05070 -3.3 -1.2 DNA primase catalytic subunit PriS compare
MMJJ_RS01415 -3.3 -1.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS06725 -3.3 -11.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05380 -3.3 -0.7 hypothetical protein compare
MMJJ_RS03650 -3.3 -6.2 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS03125 -3.3 -3.0 GMC oxidoreductase compare
MMJJ_RS00475 -3.3 -1.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06665 -3.3 -5.3 DUF3236 domain-containing protein compare
MMJJ_RS01755 -3.2 -1.4 ferrous iron transport protein B compare
MMJJ_RS07000 -3.2 -1.0 TrkH family potassium uptake protein compare
MMJJ_RS00125 -3.2 -1.4 KEOPS complex subunit Cgi121 compare
MMJJ_RS06180 -3.2 -1.4 tryptophan--tRNA ligase compare
MMJJ_RS05995 -3.2 -1.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS06635 -3.2 -11.7 4Fe-4S binding protein compare
MMJJ_RS05950 -3.2 -1.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS06175 -3.2 -1.1 DUF1743 domain-containing protein compare
MMJJ_RS02855 -3.2 -9.8 DEAD/DEAH box helicase compare
MMJJ_RS08250 -3.2 -4.3 hydrogenase maturation peptidase HycI compare
MMJJ_RS05935 -3.2 -1.1 Era-like GTP-binding protein compare
MMJJ_RS08010 -3.2 -6.6 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS08155 -3.2 -3.1 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS05370 -3.1 -9.5 LysR family transcriptional regulator compare
MMJJ_RS03360 -3.1 -0.7 hypothetical protein compare
MMJJ_RS03580 -3.1 -1.4 TIGR00303 family protein compare
MMJJ_RS04680 -3.1 -9.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS00215 -3.1 -1.2 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04965 -3.1 -3.4 RNA polymerase Rpb4 family protein compare
MMJJ_RS01565 -3.1 -4.8 TIGR00267 family protein compare
MMJJ_RS05610 -3.1 -1.9 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS00345 -3.1 -9.7 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS06020 -3.1 -4.8 hypothetical protein compare
MMJJ_RS03660 -3.1 -2.1 DUF447 family protein compare
MMJJ_RS01475 -3.1 -1.1 signal recognition particle-docking protein FtsY compare
MMJJ_RS07630 -3.1 -14.9 hypothetical protein compare


Specific Phenotypes

For 28 genes in this experiment